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Report for CCDS92030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92030.1 Public Homo sapiens 15 SKOR1 24 110 108 CCDS HistoryNCBI Gene:390598Re-query CCDS DB by CCDS ID:92030.1Re-query CCDS DB by GeneID:390598See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 92030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380035.3 ENSP00000369374.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380035.3Link to Ensembl Protein Viewer:ENSP00000369374.2Re-query CCDS DB by Nucleotide ID:ENST00000380035Re-query CCDS DB by Protein ID:ENSP00000369374
Original member Current member NCBI NM_001365915.1 NP_001352844.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365915.1Link to Protein Sequence:NP_001352844.1Re-query CCDS DB by Nucleotide ID:NM_001365915Re-query CCDS DB by Protein ID:NP_001352844Link to BLAST:NP_001352844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352844.1 965 P84550-1 965 100% 0 0

Chromosomal Locations for CCDS 92030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 67825603 67825709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67825936 67828144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67829179 67829269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67830191 67830298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67830818 67830889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67832274 67832348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67832607 67832681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67833192 67833257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67833742 67833836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2898 nt):
ATGGCTTTGCTGTGTGGCCTTGGGCAAGTCACTCTGCGTATCTGGGTTTCACTTCCTTCCCAATCCGAAA
ACGGGATTGGGTTCCTTGCAGCCCGGGCATTCCTGAGGAGCGGCGGCATGGAGGCTCTCACCACTCAGCT
GGGGCCGGGGCGCGAGGGCAGTTCCTCGCCCAACTCCAAGCAGGAGCTGCAGCCGTACTCGGGCTCCAGC
GCTCTCAAACCCAACCAGGTGGGCGAGACGTCGCTGTACGGGGTGCCCATTGTGTCGCTGGTCATCGACG
GCCAGGAGCGCCTATGCCTGGCGCAGATCTCCAACACCCTCCTCAAGAACTACAGCTATAATGAGATCCA
CAACCGCCGCGTGGCCCTGGGCATCACGTGCGTGCAGTGCACGCCGGTACAGCTGGAGATTCTGCGTCGG
GCCGGGGCCATGCCCATCTCGTCGCGCCGCTGCGGCATGATCACTAAGCGAGAGGCCGAACGCCTGTGCA
AGTCGTTCCTGGGCGAGCACAAACCACCCAAGCTGCCCGAGAACTTCGCCTTCGATGTGGTGCACGAGTG
CGCGTGGGGCTCGCGTGGTAGCTTCATCCCTGCGCGTTACAACAGCTCTCGTGCCAAGTGCATCAAGTGC
GGCTACTGCAGCATGTACTTCTCGCCCAACAAGTTCATCTTCCACTCGCACCGAACACCCGACGCCAAGT
ACACGCAGCCCGATGCCGCCAACTTCAACTCCTGGCGTCGTCACCTCAAACTCAGTGACAAGTCGGCCAC
AGACGAACTGAGCCATGCTTGGGAGGACGTCAAGGCCATGTTTAATGGCGGCACGCGCAAGCGGACCTTC
TCCCTACAAGGAGGCGGCGGAGGCGGTGCCAATGGCGGGTCGGGTGGGCAGGGGAAGGGTGGTGCTGGCG
GCGGTGGCGGCGGTGGCCCAGGGTGCGGTGCAGAGATGGCCCCAGGCCCGCCGCCCCACAAAAGCCTGCG
CTGTGGCGAAGATGAGGCTGCCGGGCCTCCGGGGCCACCTCCACCCCACCCGCAGCGCGGACTTGGCCTG
GCGACTGGAGCTAGTGGCCCGGCGGGCCCAGGAGGGCCCGGTGGCGGCGCCGGCGTACGAAGCTACCCGG
TGATCCCGGTGCCCAGCAAAGGCTTTGGGCTCCTGCAAAAGCTGCCCCCACCACTTTTCCCCCATCCTTA
CGGCTTCCCTACGGCCTTCGGCCTATGCCCCAAAAAGGACGACCCGGTTTTAGGCGCGGGCGAGCCAAAG
GGCGGTCCTGGCACTGGGAGCGGCGGCGGCGGCGCGGGGACAGGCGGGGGTGCGGGGGGCCCGGGAGCCA
GCCACTTGCCCCCGGGGGCAGGGGCGGGCCCGGGCGGCGGCGCCATGTTCTGGGGGCATCAACCCTCCGG
GGCAGCCAAGGACGCAGCGGCAGTGGCTGCAGCGGCCGCCGCCGCCACTGTGTACCCGACGTTTCCCATG
TTCTGGCCAGCAGCAGGCAGCCTCCCGGTACCGTCCTACCCCGCTGCTCAGAGCCAAGCCAAGGCCGTGG
CGGCAGCCGTGGCGGCGGCAGCGGCGGCGGCAGCGGCAGCTGCTGGCAGCGGTGCCCCAGAGCCCCTGGA
CGGTGCCGAGCCAGCCAAAGAGAGTGGCCTCGGCGCGGAGGAGCGCTGCCCGAGCGCTCTGTCCCGCGGG
CCCCTGGACGAAGACGGCACGGACGAGGCGCTGCCACCGCCCCTGGCCCCGTTGCCCCCGCCGCCCCCGC
CGCCCGCACGCAAAGGCTCCTACGTGTCGGCCTTCCGGCCGGTGGTCAAGGACACCGAGAGCATCGCTAA
GCTCTACGGGAGCGCCCGGGAGGCGTACGGCGCGGGGCCTGCTCGGGGGCCGGGACCCGGCGCTGGGAGC
GGCGGCTACGTGAGCCCGGACTTTCTGAGCGAGGGCAGCTCCAGCTACAATTCCGCCTCGCCCGACGTGG
ACACCGCGGACGAGCCCGAGGTGGACGTGGAATCCAACCGCTTCCCCGACGACGAGGACGCCCAAGAGGA
GACCGAGCCCAGCGCACCCAGCGCAGGGGGCGGCCCAGACGGTGAACAGCCCACTGGACCCCCTTCCGCC
ACCTCCTCTGGCGCGGACGGTCCCGCAAACTCTCCCGACGGCGGCAGCCCCCGCCCCCGGCGCCGCCTCG
GGCCACCCCCAGCTGGCCGGCCCGCATTTGGGGACTTGGCAGCCGAAGACTTGGTGCGGAGACCTGAGAG
GAGCCCGCCAAGCGGCGGCGGCGGCTACGAGCTGCGAGAGCCTTGCGGGCCCCTAGGAGGCCCCGCGCCG
GCCAAGGTGTTCGCGCCCGAGAGGGATGAGCACGTGAAGAGCGCGGCGGTGGCGCTGGGGCCCGCGGCCT
CCTACGTCTGCACCCCCGAGGCCCACGAGCCAGATAAGGAAGACAATCACTCGCCCGCCGATGATTTGGA
AACGAGGAAATCCTATCCAGACCAAAGGAGTATCTCCCAGCCAAGTCCTGCAAATACAGACAGAGGCGAA
GATGGGCTTACCTTGGATGTCACAGGAACTCATTTGGTGGAGAAAGATATCGAGAACCTGGCCAGAGAGG
AATTGCAAAAACTGCTCCTGGAACAAATGGAGCTCCGCAAGAAGCTGGAACGGGAATTTCAGAGTCTCAA
AGATAATTTTCAGGATCAAATGAAGAGGGAATTGGCTTATCGAGAAGAAATGGTGCAACAGCTGCAAATT
GTCAGAGATACCCTGTGTAACGAACTCGACCAGGAGCGGAAGGCGCGCTATGCCATCCAGCAGAAATTGA
AAGAAGCCCACGACGCCCTGCACCATTTCTCCTGCAAGATGCTGACGCCCCGCCACTGCACTGGCAACTG
CTCCTTCAAGCCACCGCTGTTGCCCTAG

Translation (965 aa):
MALLCGLGQVTLRIWVSLPSQSENGIGFLAARAFLRSGGMEALTTQLGPGREGSSSPNSKQELQPYSGSS
ALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQLEILRR
AGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVVHECAWGSRGSFIPARYNSSRAKCIKC
GYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRKRTF
SLQGGGGGGANGGSGGQGKGGAGGGGGGGPGCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGL
ATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPK
GGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM
FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRG
PLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGS
GGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSA
TSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAP
AKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSISQPSPANTDRGE
DGLTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQI
VRDTLCNELDQERKARYAIQQKLKEAHDALHHFSCKMLTPRHCTGNCSFKPPLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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