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Report for CCDS42379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42379.1 Public Homo sapiens 17 CD300LD 24 110 108 CCDS HistoryNCBI Gene:100131439Re-query CCDS DB by CCDS ID:42379.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375352.1 ENSP00000364501.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375352.1Link to Ensembl Protein Viewer:ENSP00000364501.1Re-query CCDS DB by Nucleotide ID:ENST00000375352Re-query CCDS DB by Protein ID:ENSP00000364501
Original member Current member NCBI NM_001115152.2 NP_001108624.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001115152.2Link to Protein Sequence:NP_001108624.1Re-query CCDS DB by Nucleotide ID:NM_001115152Re-query CCDS DB by Protein ID:NP_001108624Link to BLAST:NP_001108624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108624.1 194 Q6UXZ3 194 100% 0 0

Chromosomal Locations for CCDS 42379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74580002 74580113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74582218 74582311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74588511 74588849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74592163 74592202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGTGGCTGTCCCCATCTCTGCTGCTTCTCATCCTCCCAGGTTACTCCATTGCCGCTAAAATCACTGGTC
CAACAACAGTGAATGGCTCGGAGCAGGGCTCATTGACTGTGCAGTGTGCTTATGGCTCAGGCTGGGAGAC
CTACTTGAAGTGGCGGTGTCAAGGAGCTGATTGGAATTACTGTAACATCCTTGTTAAAACAAATGGATCA
GAGCAGGAGGTAAAGAAGAATCGAGTTTCCATCAGGGACAATCAGAAAAACCACGTGTTCACCGTGACCA
TGGAGAATCTCAAAAGAGATGATGCTGACAGTTATTGGTGTGGGACTGAGAGACCTGGAATTGATCTTGG
GGTCAAAGTTCAAGTGACCATTAACCCAGGCACACAAACTGCAGTCTCAGAATGGACAACCACAACAGCA
AGCCTGGCTTTCACAGCTGCAGCCACCCAGAAGACCAGCAGCCCCCTCACCAGGTCCCCGCTCAAGAGCA
CCCACTTCCTGTTCCTGTTCCTCCTGGAGCTGCCTCTGCTCCTGAGCATGCTGGGGACCGTCCTCTGGGT
AAACAGACCACAAAGAAGGTCTTGA

Translation (194 aa):
MWLSPSLLLLILPGYSIAAKITGPTTVNGSEQGSLTVQCAYGSGWETYLKWRCQGADWNYCNILVKTNGS
EQEVKKNRVSIRDNQKNHVFTVTMENLKRDDADSYWCGTERPGIDLGVKVQVTINPGTQTAVSEWTTTTA
SLAFTAAATQKTSSPLTRSPLKSTHFLFLFLLELPLLLSMLGTVLWVNRPQRRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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