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Report for CCDS41253.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41253.2 Public Homo sapiens 1 AADACL3 24 110 108 CCDS HistoryNCBI Gene:126767Re-query CCDS DB by CCDS ID:41253.2Re-query CCDS DB by GeneID:126767See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 41253.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41253.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359318.8 ENSP00000352268.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359318.8Link to Ensembl Protein Viewer:ENSP00000352268.6Re-query CCDS DB by Nucleotide ID:ENST00000359318Re-query CCDS DB by Protein ID:ENSP00000352268
Original member Current member NCBI NM_001103170.3 NP_001096640.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001103170.3Link to Protein Sequence:NP_001096640.2Re-query CCDS DB by Nucleotide ID:NM_001103170Re-query CCDS DB by Protein ID:NP_001096640Link to BLAST:NP_001096640.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096640.2 407 Q5VUY0 407 100% 0 0

Chromosomal Locations for CCDS 41253.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12716177 12716344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12719475 12719691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12720883 12720946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12725222 12725996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGTGGGACCTGGCCCTGATCTTCCTCGCAGCAGCCTGCGTGTTCTCACTAGGGGTCACTCTGTGGGTCA
TTTGCAGCCATTTTTTCACTGTGCACATCCCTGCAGCGGTTGGCCACCCTGTGAAACTGAGAGTCCTCCA
TTGCATCTTCCAGCTGCTGTTGACTTGGGGGATGATATTTGAGAAGCTCAGAATCTGTTCTATGCCCCAA
TTTTTCTGTTTCATGCAAGATCTGCCTCCGCTAAAGTATGACCCCGATGTTGTGGTCACGGATTTCCGCT
TTGGGACAATCCCTGTGAAGCTGTACCAACCCAAGGCATCCACCTGCACCCTGAAGCCTGGCATCGTGTA
CTACCACGGTGGCGGGGGCGTCATGGGGAGTTTGAAAACCCACCATGGCATATGCTCTCGTTTGTGCAAG
GAGAGTGACTCCGTGGTTCTGGCAGTTGGTTACCGCAAGTTACCTAAGCATAAGTTTCCAGTGCCAGTAA
GAGACTGCTTGGTGGCCACCATCCACTTCCTGAAGTCCCTGGATGCATATGGAGTGGATCCAGCCCGGGT
TGTGGTCTGCGGTGACAGTTTCGGAGGGGCAATAGCCGCAGTGGTTTGTCAACAACTTGTGGACAGGCCA
GATCTGCCCCGGATCCGGGCTCAGATCCTGATCTATGCCATTCTCCAAGCCCTGGATTTACAAACCCCTT
CGTTTCAACAGAGGAAAAACATCCCACTGCTCACCTGGAGTTTCATCTGCTACTTTTTTTTTCAAAACCT
GGATTTCAGCTCCTCCTGGCAAGAGGTCATCATGAAAGGTGCCCATTTGCCTGCTGAAGTCTGGGAAAAG
TACAGAAAGTGGTTGGGCCCAGAAAACATCCCTGAGAGGTTTAAGGAGAGGGGTTACCAACTGAAGCCCC
ATGAGCCCATGAATGAAGCTGCTTACTTGGAAGTAAGTGTTGTCCTGGATGTGATGTGCTCGCCCCTGAT
TGCAGAAGATGACATAGTGTCTCAGCTCCCGGAAACCTGCATCGTGAGCTGTGAGTATGATGCTCTCCGG
GACAATTCACTGTTGTACAAGAAAAGGCTGGAAGACCTGGGAGTGCCCGTGACCTGGCACCATATGGAGG
ATGGTTTCCATGGAGTGCTCAGGACCATTGACATGAGCTTCTTGCACTTTCCCTGCTCCATGAGAATTCT
GAGTGCATTAGTTCAATTTGTAAAGGGACTGTGA

Translation (407 aa):
MWDLALIFLAAACVFSLGVTLWVICSHFFTVHIPAAVGHPVKLRVLHCIFQLLLTWGMIFEKLRICSMPQ
FFCFMQDLPPLKYDPDVVVTDFRFGTIPVKLYQPKASTCTLKPGIVYYHGGGGVMGSLKTHHGICSRLCK
ESDSVVLAVGYRKLPKHKFPVPVRDCLVATIHFLKSLDAYGVDPARVVVCGDSFGGAIAAVVCQQLVDRP
DLPRIRAQILIYAILQALDLQTPSFQQRKNIPLLTWSFICYFFFQNLDFSSSWQEVIMKGAHLPAEVWEK
YRKWLGPENIPERFKERGYQLKPHEPMNEAAYLEVSVVLDVMCSPLIAEDDIVSQLPETCIVSCEYDALR
DNSLLYKKRLEDLGVPVTWHHMEDGFHGVLRTIDMSFLHFPCSMRILSALVQFVKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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