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Report for CCDS86647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86647.1 Public Homo sapiens 17 PVALEF 24 110 108 CCDS HistoryNCBI Gene:388428Re-query CCDS DB by CCDS ID:86647.1Re-query CCDS DB by GeneID:388428See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 86647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000637878.2 ENSP00000490956.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000637878.2Link to Ensembl Protein Viewer:ENSP00000490956.1Re-query CCDS DB by Nucleotide ID:ENST00000637878Re-query CCDS DB by Protein ID:ENSP00000490956
Original member Current member NCBI NM_001354639.2 NP_001341568.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001354639.2Link to Protein Sequence:NP_001341568.1Re-query CCDS DB by Nucleotide ID:NM_001354639Re-query CCDS DB by Protein ID:NP_001341568Link to BLAST:NP_001341568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341568.1 134 A0A1B0GWK0 134 100% 0 0

Chromosomal Locations for CCDS 86647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81181227 81181332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81181559 81181694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81181966 81182081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81182965 81183011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGAGGAGGACTTCTCCTCCCAGATGAAGAAGATGGCCTTGGCCATGGGCACGTCCCTATCAGACAAGG
ACATTGAGCTGCTGCCCACAGACATGAGACACCACGGGTCCTTCAACTACCTCAAGTTCTTCAAGCACAT
CCGCAAGCTCCACGCCTCGGGCCAGCTGGACGACGCCATCCACACGGCCTTCCAGTCCCTGGACAAGGAC
AAGAGTGGCTTCATTGAGTGGAACGAGATCAAGTACATCCTGTCCATCATCCCCAGCAGCGGGCCCACCA
CCCCGCTGACAGACGAGGAGGCCGAGGCCATGATCCAGGCGGCAGACACACACGGGGACGGGAGGATCAA
CTACGAAGAATTTTCTGAATTGATCAAAAAGGAGAAAATTCCAAAGAAGAAGTAG

Translation (134 aa):
MEEDFSSQMKKMALAMGTSLSDKDIELLPTDMRHHGSFNYLKFFKHIRKLHASGQLDDAIHTAFQSLDKD
KSGFIEWNEIKYILSIIPSSGPTTPLTDEEAEAMIQAADTHGDGRINYEEFSELIKKEKIPKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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