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Report for CCDS59221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59221.1 Public Homo sapiens 10 NKX1-2 24 110 108 CCDS HistoryNCBI Gene:390010Re-query CCDS DB by CCDS ID:59221.1Re-query CCDS DB by GeneID:390010See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 59221.1
This CCDS representation lacks full-length human transcript support. Its exon combination is therefore inferred, but it is supported by the full-length orthologous transcript in mouse (AF222444.1).

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451024.5 ENSP00000451945.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000451024.5Link to Ensembl Protein Viewer:ENSP00000451945.1Re-query CCDS DB by Nucleotide ID:ENST00000451024Re-query CCDS DB by Protein ID:ENSP00000451945
Original member Current member NCBI NM_001146340.3 NP_001139812.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146340.3Link to Protein Sequence:NP_001139812.1Re-query CCDS DB by Nucleotide ID:NM_001146340Re-query CCDS DB by Protein ID:NP_001139812Link to BLAST:NP_001139812.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139812.1 310 Q9UD57 310 100% 0 0

Chromosomal Locations for CCDS 59221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 124447429 124448147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124449730 124449943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGCTGGCATGGCAGGACGGCGGGGCCAAGGCGGCTCCCTCCCACCACAAGATTTCTTTCTCTGTCCTGG
ACATCCTGGACCCACAGAAATTCACCCGCGCAGCGCTCCCTGCCGTGCGCCCGGCTCCCCGGGAAGCCAG
GAAAAGTTTGGCGGAGGTCGAAGCGGGGAAAGATGCCAGCTCCAGGGACCCTGTCCGACAGCTGGAGACC
CCTGATGCTGCGGGCCCAGGCGCCGGCCAGGCGTCCCCCCTGGAGGGTTCCGAGGCGGAAGAGGAGGAGG
ATGCGGAGGATCCGAGGAGGCCGCGGCTGCGGGAGCGGGCTGCGCGCTTGCTGCCGGGCCTAGCGCGCTC
ACCTGACGCCCCGGCCGGGGCATTGGCGTCTGGGGAGCCCTGCGAGGACGGCGGGGGCGGCCCTGTGAGG
TCCCCCCCGGGATCCCCCGGCTCCCCGCGTCCCAGGCGCCGGCGCCTGGAGCCCAACTGCGCCAAGCCGC
GGCGCGCGCGCACCGCCTTCACCTACGAGCAGCTGGTGGCCTTGGAGAACAAGTTCCGGGCCACGCGCTA
CCTGTCAGTGTGCGAGCGCCTGAACCTCGCGCTGTCTCTCAGCCTCACCGAGACGCAGGTCAAAATCTGG
TTCCAGAATCGCAGGACCAAGTGGAAGAAGCAGAACCCGGGTGCCGACGGCGCGGCGCAGGTGGGGGGTG
GCGCGCCCCAGCCAGGGGCGGCGGGGGGCGGCGGCGGCGGCGGCTCGGGGGGCAGTCCTGGCCCTCCCGG
CACCGGCGCTCTGCACTTCCAGACTTTCCCCTCCTACTCCGCGGCCAATGTCCTCTTCCCGTCCGCCGCC
TCCTTCCCGCTGACGGCTGCCGCCCCCGGGAGCCCTTTCGCGCCGTTCCTTGGGCCTTCCTACCTGACCC
CCTTCTACGCCCCGCGTCTATGA

Translation (310 aa):
MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLET
PDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVR
SPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIW
FQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA
SFPLTAAAPGSPFAPFLGPSYLTPFYAPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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