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Report for CCDS6500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6500.1 Public Homo sapiens 9 IFNA17 24 110 108 CCDS HistoryNCBI Gene:3451Re-query CCDS DB by CCDS ID:6500.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413767.2 ENSP00000411940.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000413767.2Link to Ensembl Protein Viewer:ENSP00000411940.2Re-query CCDS DB by Nucleotide ID:ENST00000413767Re-query CCDS DB by Protein ID:ENSP00000411940
Original member Current member NCBI NM_021268.2 NP_067091.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021268.2Link to Protein Sequence:NP_067091.1Re-query CCDS DB by Nucleotide ID:NM_021268Re-query CCDS DB by Protein ID:NP_067091Link to BLAST:NP_067091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067091.1 189 P01571 189 100% 0 0

Chromosomal Locations for CCDS 6500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21227604 21228173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCCCTGTCCTTTTCTTTACTGATGGCCGTGCTGGTGCTCAGCTACAAATCCATCTGTTCTCTAGGCT
GTGATCTGCCTCAGACCCACAGCCTGGGTAATAGGAGGGCCTTGATACTCCTGGCACAAATGGGAAGAAT
CTCTCCTTTCTCCTGCCTGAAGGACAGACATGACTTTGGACTTCCCCAGGAGGAGTTTGATGGCAACCAG
TTCCAGAAGACTCAAGCCATCTCTGTCCTCCATGAGATGATCCAGCAGACCTTCAATCTCTTCAGCACAG
AGGACTCATCTGCTGCTTGGGAACAGAGCCTCCTAGAAAAATTTTCCACTGAACTTTACCAGCAACTGAA
TAACCTGGAAGCATGTGTGATACAGGAGGTTGGGATGGAAGAGACTCCCCTGATGAATGAGGACTCCATC
CTGGCTGTGAGGAAATACTTCCAAAGAATCACTCTTTATCTAACAGAGAAGAAATACAGCCCTTGTGCCT
GGGAGGTTGTCAGAGCAGAAATCATGAGATCTCTCTCTTTTTCAACAAACTTGCAAAAAATATTAAGGAG
GAAGGATTGA

Translation (189 aa):
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFGLPQEEFDGNQ
FQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACVIQEVGMEETPLMNEDSI
LAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQKILRRKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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