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Report for CCDS55411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55411.1 Public Homo sapiens X TIMM17B 24 110 108 CCDS HistoryNCBI Gene:10245Re-query CCDS DB by CCDS ID:55411.1Re-query CCDS DB by GeneID:10245See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396779.7 ENSP00000379999.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396779.7Link to Ensembl Protein Viewer:ENSP00000379999.3Re-query CCDS DB by Nucleotide ID:ENST00000396779Re-query CCDS DB by Protein ID:ENSP00000379999
Original member Current member EBI ENST00000465150.6 ENSP00000477073.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465150.6Link to Ensembl Protein Viewer:ENSP00000477073.1Re-query CCDS DB by Nucleotide ID:ENST00000465150Re-query CCDS DB by Protein ID:ENSP00000477073
Original member Current member NCBI NM_001167947.2 NP_001161419.1 Accepted alive Link to Nucleotide Sequence:NM_001167947.2Link to Protein Sequence:NP_001161419.1Re-query CCDS DB by Nucleotide ID:NM_001167947Re-query CCDS DB by Protein ID:NP_001161419Link to BLAST:NP_001161419.1
Original member Current member NCBI NM_001395497.1 NP_001382426.1 Accepted alive Link to Nucleotide Sequence:NM_001395497.1Link to Protein Sequence:NP_001382426.1Re-query CCDS DB by Nucleotide ID:NM_001395497Re-query CCDS DB by Protein ID:NP_001382426Link to BLAST:NP_001382426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161419.1 222 O60830-2 222 100% 0 0
NP_001382426.1 222 O60830-2 222 100% 0 0

Chromosomal Locations for CCDS 55411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48893729 48893817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48893900 48894010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48894097 48894225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48895038 48895101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48895352 48895501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48896759 48896858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48897724 48897749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGAGGAGTACGCTCGGGAGCCCTGCCCATGGCGAATTGTGGATGATTGCGGTGGAGCCTTCACTATGG
GTGTCATCGGTGGCGGAGTCTTCCAGGCCATCAAGGGTTTCCGCAATGCCCCTGTTTGCAGATTGCTGTC
TGAAGCTCCCTTGTTTATCTACTCTTGCTCAAGATCTGTGTCTCCCACCGTTAATGTGAGCTCTGAGAGG
GCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCCCTGCATATGGCATGGTGCTTGGCACATATAGGAA
TTCGGCACCGGTTGAGAGGTAGTGCCAATGCTGTGAGGATCCGAGCCCCCCAGATTGGAGGTAGCTTCGC
AGTGTGGGGGGGCCTGTTCTCCACCATCGACTGTGGCCTGGTGCGGCTTCGGGGCAAGGAGGATCCCTGG
AACTCTATCACCAGTGGAGCATTGACCGGGGCTGTGCTGGCTGCCCGCAGTGGCCCACTGGCCATGGTGG
GCTCAGCAATGATGGGGGGCATCCTGTTGGCCCTCATTGAGGGCGTTGGCATCCTCCTCACTCGCTACAC
AGCCCAGCAGTTCCGAAATGCGCCCCCATTCCTGGAGGACCCCAGCCAGCTGCCCCCTAAGGATGGCACC
CCGGCCCCAGGCTACCCCAGCTATCAGCAGTACCACTGA

Translation (222 aa):
MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVCRLLSEAPLFIYSCSRSVSPTVNVSSER
AESRPTLFMAVSLHMAWCLAHIGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPW
NSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGT
PAPGYPSYQQYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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