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Report for CCDS45944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45944.1 Public Homo sapiens 19 MBD3L3 24 110 108 CCDS HistoryNCBI Gene:653657Re-query CCDS DB by CCDS ID:45944.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333843.9 ENSP00000333183.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333843.9Link to Ensembl Protein Viewer:ENSP00000333183.4Re-query CCDS DB by Nucleotide ID:ENST00000333843Re-query CCDS DB by Protein ID:ENSP00000333183
Original member Current member EBI ENST00000693237.1 ENSP00000508603.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693237.1Link to Ensembl Protein Viewer:ENSP00000508603.1Re-query CCDS DB by Nucleotide ID:ENST00000693237Re-query CCDS DB by Protein ID:ENSP00000508603
Original member Current member EBI ENST00000689071.1 ENSP00000509049.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689071.1Link to Ensembl Protein Viewer:ENSP00000509049.1Re-query CCDS DB by Nucleotide ID:ENST00000689071Re-query CCDS DB by Protein ID:ENSP00000509049
Original member Current member NCBI NM_001164425.4 NP_001157897.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164425.4Link to Protein Sequence:NP_001157897.1Re-query CCDS DB by Nucleotide ID:NM_001164425Re-query CCDS DB by Protein ID:NP_001157897Link to BLAST:NP_001157897.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157897.1 208 A6NE82 208 100% 0 0

Chromosomal Locations for CCDS 45944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7056322 7056903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7058561 7058605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGGAGAGCCTGCGTTCACCTCTTTTCCGAGCCCACCTGTTCTGGGGAAGCTCAAAAGAAACATGATGC
CCTGGGCTTTACAGAAGAAACGAGAAATCCACATGGCCAAGGCCCATCGGAGACGAGCTGCGAGGTCTGC
TCTCCCCATGAGACTCACCAGCTGCATCTTCCGGAGGCCGGTGACAAGGATCAGGTCTCATCCTGACAAC
CAGGTCAGACGCAGAAAAGGGGACGAGCACCTGGAGAAGCCGCAGCAACTCTGCGCCTACCGGAGACTGC
AGGCCCTGCAGCCCTGCAGCAGCCAAGGAGAAGGTTCAAGTCCACTGCATTTGGAGAGCGTCTTAAGTAT
CCTTGCACCGGGGACGGCCGGTGAATCTCTGGACAGGGCTGGTGCTGAGCGTGTGCGCAGCCCGCTTGAG
CCCACCCCTGGGCGGTTTCCAGCTGTGGCAGGGGGGCCAACCCCAGGAATGGGTTGTCAGCTCCCACCGC
CCCTCTCTGGCCAATTGGTGACTCCTGCAGATATCCGGAGACAGGCCAGGAGGGTGAAGAAAGCCAGGGA
GAGACTGGCCAAGGCCTTGCAGGCAGACAGGCTGGCCAGGCAGGCAGAAATGCTGACATGTAGATGA

Translation (208 aa):
MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDN
QVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLE
PTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQADRLARQAEMLTCR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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