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Report for CCDS5246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5246.1 Public Homo sapiens 6 CNKSR3 24 110 108 CCDS HistoryNCBI Gene:154043Re-query CCDS DB by CCDS ID:5246.1Re-query CCDS DB by GeneID:154043See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000607772.6 ENSP00000475915.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000607772.6Link to Ensembl Protein Viewer:ENSP00000475915.1Re-query CCDS DB by Nucleotide ID:ENST00000607772Re-query CCDS DB by Protein ID:ENSP00000475915
Original member Current member NCBI NM_173515.4 NP_775786.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173515.4Link to Protein Sequence:NP_775786.2Re-query CCDS DB by Nucleotide ID:NM_173515Re-query CCDS DB by Protein ID:NP_775786Link to BLAST:NP_775786.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775786.2 555 Q6P9H4-1 555 100% 0 0

Chromosomal Locations for CCDS 5246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 154406354 154406652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154410343 154410432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154410934 154411142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154414299 154414423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154422506 154422652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154422915 154422983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154428128 154428187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154430472 154430591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154433466 154433507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154441292 154441379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154442088 154442290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154450095 154450258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154510063 154510114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGAACCCGTGACCAAGTGGAGCCCCAAACAAGTGGTGGACTGGACTAGAGGGTTGGATGACTGCCTGC
AACAATATGTCCACAAGTTTGAACGAGAGAAGATCAACGGCGAGCAGCTGCTGCAGATTTCCCATCAGGA
CCTGGAGGAGCTGGGGGTCACACGGATTGGACACCAGGAGCTTGTGTTGGAGGCTGTGGACCTTCTCTGT
GCACTGAATTATGGCCTCGAAACTGATAACATGAAGAACTTGGTTCTGAAACTGAGAGCATCTTCCCACA
ATTTACAGAATTACATAAGTAGCCGACGGAAAAGTCCCGCTTACGATGGCAACACCTCCCGCAAGGCCCC
CAATGAGTTCCTGACCTCGGTGGTGGAGCTCATCGGCGCCGCCAAGGCCCTGCTGGCGTGGCTGGACCGG
GCTCCGTTTACAGGGATCACTGATTTCTCAGTCACGAAGAACAAAATTATCCAGCTTTGCTTGGACCTGA
CCACTACAGTCCAGAAGGATTGCTTTGTAGCGGAAATGGAGGATAAAGTTTTAACTGTGGTCAAGGTTTT
AAATGGCATCTGTGACAAAACAATCCGATCTACCACAGATCCTGTGATGAGCCAGTGTGCATGTCTGGAG
GAAGTTCACTTACCAAACATTAAACCTGGGGAAGGCCTGGGCATGTACATCAAATCAACCTATGATGGGT
TACACGTGATTACTGGAACCACAGAAAATTCTCCTGCAGACAGATCTCAGAAGATTCATGCTGGTGACGA
AGTCATTCAAGTTAATCAGCAAACTGTGGTGGGATGGCAGCTGAAAAATCTGGTGAAGAAATTGAGAGAG
AATCCCACCGGAGTTGTGTTACTGCTTAAGAAGCGCCCCACCGGGTCTTTCAACTTTACTCCTGCTCCCC
TGAAAAACCTACGGTGGAAGCCACCTCTTGTACAGACCTCACCTCCACCCGCGACAACCCAGTCCCCTGA
AAGCACTATGGATACCTCACTGAAGAAGGAGAAGTCAGCCATCCTGGATCTTTATATTCCTCCTCCGCCT
GCTGTTCCCTACTCTCCCCGGGATGAGAATGGCAGTTTTGTTTATGGAGGGTCCAGTAAGTGCAAACAAC
CATTGCCTGGTCCTAAGGGTTCAGAGTCCCCGAATTCCTTCTTGGACCAGGAAAGCCGGAGACGAAGATT
CACCATTGCAGACTCGGATCAGTTGCCTGGGTACTCGGTGGAAACCAACATTCTGCCCACAAAAATGAGA
GAGAAAACACCATCTTATGGCAAGCCACGGCCTTTGTCCATGCCTGCTGATGGGAACTGGATGGGGATTG
TGGACCCTTTTGCCAGACCTCGAGGTCATGGCAGGAAAGGGGAGGATGCCCTTTGCCGGTATTTCAGTAA
CGAGCGGATTCCTCCGATCATTGAAGAGAGCTCCTCTCCCCCATACCGGTTCTCCAGACCCACGACCGAG
CGGCATCTGGTCCGGGGTGCGGACTACATCCGAGGAAGCAGGTGCTACATCAACTCAGATCTCCACAGCA
GCGCCACGATTCCATTCCAGGAGGAAGGGACCAAAAAGAAATCTGGCTCCTCAGCTACGAAGTCCTCGTC
CACAGAACCGTCCCTCCTGGTCAGCTGGTTTACGCGCCTCAAACTGTTGACTCACTGA

Translation (555 aa):
MEPVTKWSPKQVVDWTRGLDDCLQQYVHKFEREKINGEQLLQISHQDLEELGVTRIGHQELVLEAVDLLC
ALNYGLETDNMKNLVLKLRASSHNLQNYISSRRKSPAYDGNTSRKAPNEFLTSVVELIGAAKALLAWLDR
APFTGITDFSVTKNKIIQLCLDLTTTVQKDCFVAEMEDKVLTVVKVLNGICDKTIRSTTDPVMSQCACLE
EVHLPNIKPGEGLGMYIKSTYDGLHVITGTTENSPADRSQKIHAGDEVIQVNQQTVVGWQLKNLVKKLRE
NPTGVVLLLKKRPTGSFNFTPAPLKNLRWKPPLVQTSPPPATTQSPESTMDTSLKKEKSAILDLYIPPPP
AVPYSPRDENGSFVYGGSSKCKQPLPGPKGSESPNSFLDQESRRRRFTIADSDQLPGYSVETNILPTKMR
EKTPSYGKPRPLSMPADGNWMGIVDPFARPRGHGRKGEDALCRYFSNERIPPIIEESSSPPYRFSRPTTE
RHLVRGADYIRGSRCYINSDLHSSATIPFQEEGTKKKSGSSATKSSSTEPSLLVSWFTRLKLLTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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