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Report for CCDS31826.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31826.2 Public Homo sapiens 12 OR6C68 24 110 108 CCDS HistoryNCBI Gene:403284Re-query CCDS DB by CCDS ID:31826.2Re-query CCDS DB by GeneID:403284See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 31826.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 31826.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000548615.1 ENSP00000448811.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000548615.1Link to Ensembl Protein Viewer:ENSP00000448811.1Re-query CCDS DB by Nucleotide ID:ENST00000548615Re-query CCDS DB by Protein ID:ENSP00000448811
Original member Current member NCBI NM_001005519.2 NP_001005519.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005519.2Link to Protein Sequence:NP_001005519.2Re-query CCDS DB by Nucleotide ID:NM_001005519Re-query CCDS DB by Protein ID:NP_001005519Link to BLAST:NP_001005519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005519.2 312 A6NDL8 312 100% 0 0

Chromosomal Locations for CCDS 31826.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55492378 55493316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAGAAAACACACAGCAATAACAACATTCATCCTTCTGGGACTGACAGAAGATCCTCAGCTGCAGGTTC
TGCTTTTCATGTTTCTATTTATCACCTACATGTTGAGTGTAACAGGGAAACTGACCATTATCGCCCTCAC
CATGTTGGATCCCCACCTGAAAACACCCATGTATTTTTTTCTCCAAAATTTATCTTTCTTAGAAATCTCA
TTTACAGCTACCTGTGTTCCAAGATTCTTATACAGTATCTCAACTGGGAACAAAATAATAACGTATAATG
CATGTGTCATTCAGCTATTTTTTGCAGACCTCTTTGGGGTAACTGAATTTTTTCTTTTGGCTACCATGTC
ATATGATCGCTATGTGGCCATCTGCAAACCCTTGCATTATATGGCAATCATGAGCAACAAAGTGTGCAAA
ACAATGGTTATTTGTTGTTGGATGGCAGCACTTATGATTATCCTCCCACCACTTAGCTTAGGTTTTCATC
TAGAATTCTGTGACTCTAATGTCATCAATCATTTTGGCTGTGATGCATTGCCTATTCTGAAAATACCATG
CTCAGACACATCATTAATTGAGCAGATGGTTGTAGCCTCTGCTGTATTAACCTTTATTATCACTCTTGTA
TGTGTAGTTCTGTCCTACACATATATCATAAGAACAATTCTAAAATTCCCTTCTGTTCAACAAAAGAAAA
AAGCCTTTTCTACCTGTTCTTCACATATTACTGTGGTTTCCATCACTTATGGCAGCTGCATCTTCATCTA
TATCAAGCCATCTGCAAAAGAAGAGGTAAACATTAATAAAGGTGTGTCAGTGCTTATTTCATCCATATCA
CCTATGTTGAATTCTTTCATATATACTCTTAGGAATGAGCAAGTTAAACAAGCCTTTCATGACTCACTCA
AAAAAATTGCATTTCGTTTAAAAAAGTAA

Translation (312 aa):
MRKHTAITTFILLGLTEDPQLQVLLFMFLFITYMLSVTGKLTIIALTMLDPHLKTPMYFFLQNLSFLEIS
FTATCVPRFLYSISTGNKIITYNACVIQLFFADLFGVTEFFLLATMSYDRYVAICKPLHYMAIMSNKVCK
TMVICCWMAALMIILPPLSLGFHLEFCDSNVINHFGCDALPILKIPCSDTSLIEQMVVASAVLTFIITLV
CVVLSYTYIIRTILKFPSVQQKKKAFSTCSSHITVVSITYGSCIFIYIKPSAKEEVNINKGVSVLISSIS
PMLNSFIYTLRNEQVKQAFHDSLKKIAFRLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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