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Report for CCDS45055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45055.1 Public Homo sapiens 13 PRR20D 24 110 108 CCDS HistoryNCBI Gene:729246Re-query CCDS DB by CCDS ID:45055.1Re-query CCDS DB by GeneID:729246See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45055.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452123.3 ENSP00000392407.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452123.3Link to Ensembl Protein Viewer:ENSP00000392407.2Re-query CCDS DB by Nucleotide ID:ENST00000452123Re-query CCDS DB by Protein ID:ENSP00000392407
Original member Current member NCBI NM_001130406.1 NP_001123878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130406.1Link to Protein Sequence:NP_001123878.1Re-query CCDS DB by Nucleotide ID:NM_001130406Re-query CCDS DB by Protein ID:NP_001123878Link to BLAST:NP_001123878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123878.1 221 P86480 221 100% 0 0

Chromosomal Locations for CCDS 45055.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 57161019 57161070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57162092 57162705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGAGGAACCAAGGCCTTCGAAGCGACTTCGCTCCATGGCCCCTAATCAAGCCTCAGGTGGGCCTCCTC
CAGAGCCAGGCTGCTGTGTTGCGGACCCTGAAGGCTCCGTGGAAGCAGATGGGCCCGCACAGCCAGCCCA
ACCCGCAAAACCCATCGCTTACGTGAAACCCTTCAGACGGCAGCCCCCAGCTCGCCCAGAGTCACCCCCT
CCTGCAGAGAGAGGCCGGCGCCGGGGAGGAAGCCGGCGGCCAGGGCGAGGCCGTGGCAGAAGGGCTGGGC
CCCGCGGGGACGCTGGCCAGAGACAGGGGGCAGAAGGCTTGATGGCACCGGACGTGCACATCCAACTGGA
CCACCATGGAGAGCCAGGCCACCAGGGGGAACCGGAAATCACGGAGACCGCAGCCTTCTCCCTTTCTGAA
ACAGGTCCTCCGCCTGGAACTGTGCAGGAAGGCCCTGGCCCCGACGTGGCGCAACCTGAGCTGGGGTTTC
AGGAGCCGCCCGCTGCTCCTGGGCCTCAGGCTGTTGACTGGCAACCCGTCTTGACCCTCTATCCCTGCAT
CGGGTTTAGGGCTCTGGGTGACTCAGCGGTTTTACAAGTCATTCAAACCCCCCAGGGCACCTACGTGCAA
GGGGTCCCAGTGTTCCTCACCGACATTGCGTATTGA

Translation (221 aa):
MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPP
PAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSE
TGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPVLTLYPCIGFRALGDSAVLQVIQTPQGTYVQ
GVPVFLTDIAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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