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Conserved domains on  [gi|4426565|gb|AAD20436|]
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unknown [Rattus norvegicus]

Protein Classification

BZW family protein( domain architecture ID 10184010)

BZW family protein similar to human basic leucine zipper and W2 domain-containing protein 1 that enhances histone H4 gene transcription but does not seem to bind DNA directly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
W2_eIF5C_like cd11560
C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; ...
 218-408 8.11e-107

C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.


:

Pssm-ID: 211398 [Multi-domain]  Cd Length: 194  Bit Score: 313.38  E-value: 8.11e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  218 ELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLPETAVIGLL 297
Cdd:cd11560   1 EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIAAVKEQMKKSSLPEHEVVGLL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  298 WTCVMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEA 377
Cdd:cd11560  81 WTALMDAVEWSKKEDQIAEQALRHLKKYAPLLAAFCTTARAELALLNKIQEYCYENMKFMKVFQKIVKLLYKADVLSEDA 160

                       170       180       190
                ....*....|....*....|....*....|.
gi 4426565  378 ILKWYKEAHAAKGKSVFLDQMKKFVEWLQNA 408
Cdd:cd11560 161 ILKWYKKGHSPKGKQVFLKQMEPFVEWLQEA 191
 
Name Accession Description Interval E-value
W2_eIF5C_like cd11560
C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; ...
 218-408 8.11e-107

C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.


Pssm-ID: 211398 [Multi-domain]  Cd Length: 194  Bit Score: 313.38  E-value: 8.11e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  218 ELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLPETAVIGLL 297
Cdd:cd11560   1 EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIAAVKEQMKKSSLPEHEVVGLL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  298 WTCVMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEA 377
Cdd:cd11560  81 WTALMDAVEWSKKEDQIAEQALRHLKKYAPLLAAFCTTARAELALLNKIQEYCYENMKFMKVFQKIVKLLYKADVLSEDA 160

                       170       180       190
                ....*....|....*....|....*....|.
gi 4426565  378 ILKWYKEAHAAKGKSVFLDQMKKFVEWLQNA 408
Cdd:cd11560 161 ILKWYKKGHSPKGKQVFLKQMEPFVEWLQEA 191
eIF5C smart00515
Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5;
327-408 8.11e-25

Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5;


Pssm-ID: 214705  Cd Length: 83  Bit Score: 96.97  E-value: 8.11e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565     327 PLLAVFSSQGQSELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHAAKGKSVFLDQMKKFVEWLQ 406
Cdd:smart00515   2 PLLKFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLYDADILEEEAILKWYEKAVSAEGKKKVRKNAKPFVTWLQ 81


                   ..
gi 4426565     407 NA 408
Cdd:smart00515  82 EA 83
W2 pfam02020
eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of ...
 339-408 4.66e-21

eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of several translation initiation factors.


Pssm-ID: 460415  Cd Length: 76  Bit Score: 86.43  E-value: 4.66e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4426565    339 ELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHAA-KGKSVFLDQMKKFVEWLQNA 408
Cdd:pfam02020   1 QVDLLLALQEFCAKLEELLKLLLKILKALYDLDIVEEEAILKWWEDVSSAeKGMKKVRKQAKPFVEWLEEA 71
 
Name Accession Description Interval E-value
W2_eIF5C_like cd11560
C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; ...
 218-408 8.11e-107

C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins; eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.


Pssm-ID: 211398 [Multi-domain]  Cd Length: 194  Bit Score: 313.38  E-value: 8.11e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  218 ELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLPETAVIGLL 297
Cdd:cd11560   1 EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIAAVKEQMKKSSLPEHEVVGLL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  298 WTCVMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEA 377
Cdd:cd11560  81 WTALMDAVEWSKKEDQIAEQALRHLKKYAPLLAAFCTTARAELALLNKIQEYCYENMKFMKVFQKIVKLLYKADVLSEDA 160

                       170       180       190
                ....*....|....*....|....*....|.
gi 4426565  378 ILKWYKEAHAAKGKSVFLDQMKKFVEWLQNA 408
Cdd:cd11560 161 ILKWYKKGHSPKGKQVFLKQMEPFVEWLQEA 191
eIF5C smart00515
Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5;
327-408 8.11e-25

Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5;


Pssm-ID: 214705  Cd Length: 83  Bit Score: 96.97  E-value: 8.11e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565     327 PLLAVFSSQGQSELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHAAKGKSVFLDQMKKFVEWLQ 406
Cdd:smart00515   2 PLLKFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLYDADILEEEAILKWYEKAVSAEGKKKVRKNAKPFVTWLQ 81


                   ..
gi 4426565     407 NA 408
Cdd:smart00515  82 EA 83
W2 cd11473
C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon; This domain is found at the C-terminus of ...
 255-382 8.90e-23

C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon; This domain is found at the C-terminus of several translation initiation factors, including the epsilon chain of eIF2b, where it has been found to catalyze the conversion of eIF2.GDP to its active eIF2.GTP form. The structure of the domain resembles that of a set of concatenated HEAT repeats.


Pssm-ID: 211395  Cd Length: 135  Bit Score: 93.31  E-value: 8.90e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  255 RKELQKELQERLSQECP-IKEVVLYVKEEMKRNDLPETAVIGLLWTCVMNAVEWNK-KEELVAEQALKHLKQYAPLLAVF 332
Cdd:cd11473   3 NKKLRDSLLKELEEDKSsDVESVKAAKSKLDLDPISLEEVVKVLLTAVVNAVESADsISLTQKEQLVLVLKKYGPVLREL 82

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 4426565  333 SS-QGQSELVLLQKVQEYCY--DNIHFMKAFQKIVVLFYKADVLSEEAILKWY 382
Cdd:cd11473  83 LKlIKKDQLYLLLKIEKLCLqlKLSELISLLEKILDLLYDADVLSEEAILSWF 135
W2 pfam02020
eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of ...
 339-408 4.66e-21

eIF4-gamma/eIF5/eIF2-epsilon; This domain of unknown function is found at the C-terminus of several translation initiation factors.


Pssm-ID: 460415  Cd Length: 76  Bit Score: 86.43  E-value: 4.66e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4426565    339 ELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHAA-KGKSVFLDQMKKFVEWLQNA 408
Cdd:pfam02020   1 QVDLLLALQEFCAKLEELLKLLLKILKALYDLDIVEEEAILKWWEDVSSAeKGMKKVRKQAKPFVEWLEEA 71
W2_eIF2B_epsilon cd11558
C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon; eIF2B is a ...
 315-408 2.24e-17

C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon; eIF2B is a heteropentameric complex which functions as a guanine nucleotide exchange factor in the recycling of eIF-2 during the initiation of translation in eukaryotes. The epsilon and gamma subunits are sequence similar and both are essential in yeast. Epsilon appears to be the catalytically active subunit, with gamma enhancing its activity. The C-terminal domain of the eIF2B epsilon subunit contains bipartite motifs rich in acidic and aromatic residues, which are responsible for the interaction with eIF2. The structure of the domain resembles that of a set of concatenated HEAT repeats.


Pssm-ID: 211396  Cd Length: 169  Bit Score: 79.23  E-value: 2.24e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  315 AEQALKHLKQYAPLLAVFSSQGQSELVLLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKE--AHAAKGKS 392
Cdd:cd11558  69 LEALKKLLSKWGPLLENYVKSQDDQVELLLALEEFCLESEEGGPLFAKLLHALYDLDILEEEAILEWWEEpdAGADEEMK 148

                        90
                ....*....|....*.
gi 4426565  393 VFLDQMKKFVEWLQNA 408
Cdd:cd11558 149 KVRELVKKFIEWLEEA 164
W2_eIF5 cd11561
C-terminal W2 domain of eukaryotic translation initiation factor 5; eIF5 functions as a GTPase ...
 311-408 2.05e-10

C-terminal W2 domain of eukaryotic translation initiation factor 5; eIF5 functions as a GTPase acceleration protein (GAP), as well as a GDP dissociation inhibitor (GDI) during translational initiation in eukaryotes. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.


Pssm-ID: 211399  Cd Length: 157  Bit Score: 58.78  E-value: 2.05e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  311 EELVAEQALKHLKQYAPLLAVFSSQGQSELVLLQKVQEYCY-DNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEA---H 386
Cdd:cd11561  50 EVLFDENIVKEIKKRKALLLKLVTDEKAQKALLGGIERFCGkHSPELLKKVPLILKALYDNDILEEEVILKWYEKVskkY 129

                        90       100
                ....*....|....*....|...
gi 4426565  387 AAKGKS-VFLDQMKKFVEWLQNA 408
Cdd:cd11561 130 VSKEKSkKVRKAAEPFVEWLEEA 152
W2_eIF4G1_like cd11559
C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar ...
 256-381 4.93e-05

C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins; eIF4G1 is a component of the multi-subunit eukaryotic translation initiation factor 4F, which facilitates recruitment of the mRNA to the ribosome, a rate-limiting step during translation initiation. This C-terminal domain, whose structure resembles that of a set of concatenated HEAT repeats, has been associated with binding to/recruiting the kinase Mnk1, which phosphorylates eIF4E.


Pssm-ID: 211397  Cd Length: 134  Bit Score: 43.04  E-value: 4.93e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4426565  256 KELQKELQERLSQECPIKEVVLYVKEemkrNDLPETAVIGLLWTCVMNAV-EWNKKEELVAEQALKHLKQYAPLL-AVFS 333
Cdd:cd11559   4 LRVQAELLKLLQEDPNPDELYKWIKE----NVSPELYASPGFVRALMTAVlKYAIEEKSLPEKEKALLEKYAPLLqKYLD 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 4426565  334 SQGQSELVLLQKVQEYCYdNIHFMKAF-QKIVVLFYKADVLSEEAILKW 381
Cdd:cd11559  80 DDEQLQLQALYALQALVH-TLEFPKGLlLRFFDALYDEDVIEEEAFLKW 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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