|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
1-172 |
2.49e-76 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 225.98 E-value: 2.49e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 1 MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSyhTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI 80
Cdd:PRK09639 1 SDETFEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRS--DFKGIENEKGWLIKSARNVAYNYLRSEKRRRARI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 81 LGTFDWDTQdvrDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFiQGYSIQETAKALRFSESKVKTTQHRGLKV 160
Cdd:PRK09639 79 LGEFQWQEV---DNEPSPEEIWIRKEEITKVQEVLAKMTERDRTVLLLRF-SGYSYKEIAEALGIKESSVGTTLARAKKK 154
|
170
....*....|..
gi 124441994 161 LRKHMELLREEL 172
Cdd:PRK09639 155 FRKIYEQMEEEE 166
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
2-166 |
1.46e-42 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 140.90 E-value: 1.46e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRIl 81
Cdd:COG1595 16 EAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGRGSFRAWLYRIARNLAIDHLRKRRRRRELL- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 82 gtfDWDTQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVL 161
Cdd:COG1595 95 ---DELAEELPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGTVKSRLSRARKKL 171
|
....*
gi 124441994 162 RKHME 166
Cdd:COG1595 172 REALE 176
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
3-165 |
3.15e-33 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 116.29 E-value: 3.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 3 ETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRIlg 82
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRLRREL-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 83 tfdWDTQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLR 162
Cdd:TIGR02937 79 ---DLLEELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLR 155
|
...
gi 124441994 163 KHM 165
Cdd:TIGR02937 156 ELL 158
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
1-166 |
3.00e-29 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 106.59 E-value: 3.00e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 1 MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI 80
Cdd:PRK11924 11 DKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGKGSARTWLLTIARNVCYDLLRRRRREKAVL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 81 LGTFDWDTQDVRDQQllPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKV 160
Cdd:PRK11924 91 SDDALEPEFAETAET--PEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRLRRARQL 168
|
....*.
gi 124441994 161 LRKHME 166
Cdd:PRK11924 169 LRECLE 174
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
2-171 |
1.32e-26 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 99.88 E-value: 1.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQqtirQRIL 81
Cdd:PRK09652 9 RAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAAFYTWLYRIARNTAINYLRKQ----GRRP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 82 GTFDWDTQDVRDQQLL--------PDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTT 153
Cdd:PRK09652 85 PASDVDAEEAEDFDLAdalrdistPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSR 164
|
170
....*....|....*...
gi 124441994 154 QHRGLKVLRKHMELLREE 171
Cdd:PRK09652 165 IFRAREALRAKLQPLLDE 182
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
9-166 |
1.76e-24 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 93.67 E-value: 1.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 9 YDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGrSSEKTWLLSIARHVAIDWFRKQ---QTIRQRILGTFD 85
Cdd:TIGR02950 1 YREYMHDVFRYLYRLTKDKHLAEDLLQETFLKAYIHLHSFKD-SSIKPWLFRIARNAFIDWYRKDkkiQTIDDDAIGDLE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 86 WDTQDVRDQQLLpdelavQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHM 165
Cdd:TIGR02950 80 QHPVESPEHHLL------IKIEQEEITHHLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLL 153
|
.
gi 124441994 166 E 166
Cdd:TIGR02950 154 E 154
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
2-166 |
9.62e-22 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 87.44 E-value: 9.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQ---TIRQ 78
Cdd:PRK09641 17 QNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINRKFSTWLYRIATNLTIDRLRKRKpdyYLDA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 79 RILGTFDWDTQD-VRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRG 157
Cdd:PRK09641 97 EVAGTEGLTMYSqLAADDALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEISEILDLPVGTVKTRIHRG 176
|
....*....
gi 124441994 158 LKVLRKHME 166
Cdd:PRK09641 177 REALRKQLR 185
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
5-177 |
1.18e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 87.44 E-value: 1.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQqtiRQRILGTF 84
Cdd:PRK12513 28 FEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARFRTWLYQIARNLLIDHWRRH---GARQAPSL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 85 DWDTQD--VRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTqhrglkvLR 162
Cdd:PRK12513 105 DADEQLhaLADDGAAPEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPEETVKSR-------LR 177
|
170
....*....|....*
gi 124441994 163 KHMELLREELMDDEV 177
Cdd:PRK12513 178 YALQKLRELLAEEVA 192
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
3-166 |
7.80e-21 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 84.69 E-value: 7.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 3 ETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRiLG 82
Cdd:PRK09638 18 AALTTLFQQHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQGRSKFSTWLISIASRLYKDHLRKQKREKLR-LQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 83 TFDWDTQDVrdqqlLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLR 162
Cdd:PRK09638 97 RAKEETLRK-----EKWEAAIKGAEWSEMLDALSKLDPEFRAPVILKHYYGYTYEEIAKMLNIPEGTVKSRVHHGIKQLR 171
|
....
gi 124441994 163 KHME 166
Cdd:PRK09638 172 KEWG 175
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
8-166 |
9.16e-21 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 84.80 E-value: 9.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 8 LYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTiRQRILGTFDWD 87
Cdd:PRK09415 21 IMNEYGQEVLQLVYSYVKNKEVAEDLTQEIFVKCYKSLHTYKGKSSLKTWLYRIAINHCKDYLKSWHN-KKVIVTEDIFT 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124441994 88 TQDVRDQqlLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHME 166
Cdd:PRK09415 100 YMESQKE--SVEEEVIQNAEDERLASAVMSLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKELLKKGLE 176
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
2-166 |
4.95e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 81.16 E-value: 4.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQ------- 74
Cdd:PRK11922 29 EAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRGDASLSTWLSRIVLNEALGRLRRRRrlvnlae 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 75 TIRQRILGTFDWDTQDVRDQQllPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQ 154
Cdd:PRK11922 109 MVMASTIAGGERTPLADPAED--PERAAARREIRALLERAIDALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRL 186
|
170
....*....|..
gi 124441994 155 HRGLKVLRKHME 166
Cdd:PRK11922 187 HRARRLLRESLA 198
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
2-174 |
5.85e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 79.78 E-value: 5.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWfRKQQTIRQRIl 81
Cdd:PRK12543 6 QEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRPFRFWLIGLVIKQIHSW-RRKRWRRFRI- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 82 gtFDWDTQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVL 161
Cdd:PRK12543 84 --FEKAEEQRKPVSIDFSEDVLSKESNQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSRIHAALKKL 161
|
170
....*....|...
gi 124441994 162 RKHMELLREELMD 174
Cdd:PRK12543 162 RQKEQIEEIFLGE 174
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
2-166 |
3.00e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 77.67 E-value: 3.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSeKTWLLSIARHVAIDWFRKQQTIRQRIL 81
Cdd:PRK12541 4 KQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEI-RPWLFTIAYNAFIDWYRKEKKYKTTTI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 82 GTFDWDTQDVRDQQLLpdelaVQHEnVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVL 161
Cdd:PRK12541 83 EEFHLPNVPSTEHEYF-----IKHE-IASWLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKET 156
|
....*
gi 124441994 162 RKHME 166
Cdd:PRK12541 157 KSIKE 161
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
6-152 |
5.46e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 77.46 E-value: 5.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 6 QLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARhvaidwFRKQQTIRQRilGTFD 85
Cdd:PRK12515 25 QTLYGRHHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFEGRSQVSTWLLSIAR------FKALSALRRR--KHEE 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 124441994 86 WDTQDVRDqqlLPD-----ELAVQHENVREIY-AALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKT 152
Cdd:PRK12515 97 IDDEAAAA---IEDgadtpEVALQKSDTSAALrACLAKLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKT 166
|
|
| SigX5 |
TIGR02960 |
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of ... |
5-164 |
7.48e-18 |
|
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 132005 [Multi-domain] Cd Length: 324 Bit Score: 79.52 E-value: 7.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTiRQRILGTF 84
Cdd:TIGR02960 7 FTALAEPHRRELLAHCYRMLGSLHEAEDLVQETLLRAWRARDRFEGRSSVRTWLYRIATNACLDALEARQR-RPRPVGLG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 85 DWDTQ------------------DVRDQQLL-----PDELAVQHENVREIY-AALDQCTIDQRAVIILRFIQGYSIQETA 140
Cdd:TIGR02960 86 APSADgtaaaseaaevtwleplpDLTLDLDDpaaadPSVAAGSRESVRLAFvAAIQYLPPRQRAVLLLRDVLGWRAAETA 165
|
170 180
....*....|....*....|....
gi 124441994 141 KALRFSESKVKTTQHRGLKVLRKH 164
Cdd:TIGR02960 166 ELLGTSTASVNSALQRARATLDEV 189
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
5-140 |
7.57e-17 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 74.69 E-value: 7.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMvKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTirqRILGTF 84
Cdd:PRK09649 26 LEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADHIRHVRS---RPRTTR 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 124441994 85 DWDTQDVRDQqllpDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETA 140
Cdd:PRK09649 102 GARPEHLIDG----DRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSYADAA 153
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
30-143 |
1.98e-16 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 75.74 E-value: 1.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 30 TEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKqqtiRQR-----ILGTFDWDTQDVR------------ 92
Cdd:PRK08241 46 AEDAVQETLLRAWRGYDRFEGRSSLRTWLYRIATNVCLDALEG----RARrplptDLGAPAADPVDELverpevpwlepy 121
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 124441994 93 -DQQLL-----PDELAVQHENVR-EIYAALDQCTIDQRAVIILRFIQGYSIQETAKAL 143
Cdd:PRK08241 122 pDALLDpaaadPAARVVARESVRlAFVAALQHLPPRQRAVLILRDVLGWSAAEVAELL 179
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
1-166 |
9.45e-16 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 71.44 E-value: 9.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 1 MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI 80
Cdd:PRK12522 1 MEEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYRKKKRWKDRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 81 LGTFDWDTQD--VRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGL 158
Cdd:PRK12522 81 LDLFHKEDGGeiEFADDVNISEEFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK 160
|
....*...
gi 124441994 159 KVLRKHME 166
Cdd:PRK12522 161 KQMREHLE 168
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
8-166 |
2.30e-15 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 70.40 E-value: 2.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 8 LYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQtirqrilgtfdwd 87
Cdd:PRK09637 6 IWSEYKAQLKAFLHSRVSNEADVDDLLQEVLIKTHSNLHSLKDGSSIKSWLYQIANNTIIDFYRKKN------------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 88 tqdvRDQQLLPDELAVQHENVREIYAALDQC---TIDQ-----RAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLK 159
Cdd:PRK09637 73 ----RSEELPDDLLFEDEEREENAKKELAPClrpFIDAlpekyAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRV 148
|
....*..
gi 124441994 160 VLRKHME 166
Cdd:PRK09637 149 KLKELLE 155
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
2-162 |
2.70e-15 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 70.11 E-value: 2.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEG-RSSEKTWLLSIARHVAIDWFRKQQTIRQri 80
Cdd:PRK09645 8 AALMRALYDEHAAPLWRYALRLTGDRARAEDVVQETLLRAWQHPEVLADtGRSARAWLFTVARNLVIDERRSARARPV-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 81 lgtFDWDTQDVRDQQLLPDEL--AVQHENVREiyaALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGL 158
Cdd:PRK09645 86 ---EGGDDVLGVPEQSAPDEVdrALDRLLVAD---ALAQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYAL 159
|
....
gi 124441994 159 KVLR 162
Cdd:PRK09645 160 RALR 163
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
5-166 |
3.65e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 69.85 E-value: 3.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFE-GRSSEKTWLLSIARHVAIDwfrkqqTIRQRILGT 83
Cdd:PRK12514 21 FSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAvSGLSPMTWLITIARNHAID------RLRARKAVA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 84 FDWD-TQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLR 162
Cdd:PRK12514 95 VDIDeAHDLADPSPGPEAEVIAGDEGQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTMRTWLRRSLLKLR 174
|
....
gi 124441994 163 KHME 166
Cdd:PRK12514 175 ECLS 178
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
29-165 |
6.35e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 69.31 E-value: 6.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 29 QTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTiRQRILGTFDwdtqDVRDQQLLPDELAvqHENV 108
Cdd:PRK12536 48 EVEDLVQEILLAVHNARHTYRADQPLTAWVHAIARYKLMDFLRSRAR-REALHDPLD----DESELFATSDDEA--AEAR 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 124441994 109 REIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHM 165
Cdd:PRK12536 121 RDLGKLLEQLPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVKVGIHRGLKALAAKI 177
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
5-171 |
3.75e-14 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 67.43 E-value: 3.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTirqRILGTF 84
Cdd:PRK09643 29 FGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRGDAAVSSWLHRIVVNACLDRLRRAKA---RPTVPL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 85 DwDTQDVRdqQLLPDeLAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKH 164
Cdd:PRK09643 106 D-DVYPVA--QLERD-PTARVETALAVQRALMRLPVEQRAALVAVDMQGYSVADAARMLGVAEGTVKSRCARGRARLAEL 181
|
....*..
gi 124441994 165 MELLREE 171
Cdd:PRK09643 182 LGYLRAG 188
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
28-172 |
1.67e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 65.49 E-value: 1.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 28 NQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQtirQRIlgtfDWDTQDVRDQqlLPDELAVQHEN 107
Cdd:PRK12512 51 DQAEDIVQEILLAVHLKRHTWDPGAPFAPWLFAIARNKLIDALRRRG---RRV----FVDIDDFAET--LPAEPATETLP 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124441994 108 VREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKhmeLLREEL 172
Cdd:PRK12512 122 AGDVGRHLETLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAA---KFRSEP 183
|
|
| SigZ |
TIGR02959 |
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a ... |
9-166 |
1.84e-13 |
|
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Pssm-ID: 132004 [Multi-domain] Cd Length: 170 Bit Score: 65.08 E-value: 1.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 9 YDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQtirqrilgtfdwdt 88
Cdd:TIGR02959 1 WDEFRSELKAFIKSRVSDASDVEDLLQEVFIKIHRNLPSLKDGQKIQSWLYQIARNTIIDFYRSKS-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 89 qdvRDQQLLPDELAVQHENVREIYAALDQC---TIDQ-----RAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKV 160
Cdd:TIGR02959 67 ---RSVELPESLLAADSAREETFVKELSQCippMIKElpdeyREAIRLTELEGLSQQEIAEKLGLSLSGAKSRVQRGRKK 143
|
....*.
gi 124441994 161 LRKHME 166
Cdd:TIGR02959 144 LKELLE 149
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
4-171 |
2.16e-13 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 64.90 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 4 TFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEgRSSEKTWLLSIARHVAIDWFRKQQtiRQRILGT 83
Cdd:PRK09644 2 EIEEIYKMYINDVYRYLFSLTKSHHAAEDLLQETFYRAYIYLEDYD-NQKVKPWLFKVAYHTFIDFVRKEK--KVSFVGT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 84 FDWDTQdvrdQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRk 163
Cdd:PRK09644 79 DEIEAI----QAESTEEYVVAKNSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLK- 153
|
....*...
gi 124441994 164 hmELLREE 171
Cdd:PRK09644 154 --ALLKEE 159
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
13-141 |
1.44e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 63.38 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 13 HQDLYQFLFYMvKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTiRQRILGTfDWDTQDVR 92
Cdd:PRK12535 35 QDDVWRLLAHL-GGHDIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDNIRHDMA-RPRKSAT-EYEDAAAT 111
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 124441994 93 DQQLLPDELAVQHENVREIYAALDQctiDQRAVIILRFIQGYSIQETAK 141
Cdd:PRK12535 112 TASNETTGSWSEWIDVRTLIDALPP---ERREALILTQVLGYTYEEAAK 157
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
2-170 |
1.72e-12 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 63.01 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFE-GRSSEKTWLLSIARHVAIDWFRKQQtirqri 80
Cdd:PRK13919 22 EEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFDpRRGSARAWLLALAHHAAVDHVRRRA------ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 81 lgtfdwdtqdVRDQQLLPDELAVQ-------------HENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSE 147
Cdd:PRK13919 96 ----------ARPQPLEPDEREPEafdlpgpgldeegHLDRTRLGRALKALSPEERRVIEVLYYQGYTHREAAQLLGLPL 165
|
170 180
....*....|....*....|...
gi 124441994 148 SKVKTTQHRGLKVLRkhmELLRE 170
Cdd:PRK13919 166 GTLKTRARRALSRLK---EVLRE 185
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
31-167 |
3.42e-12 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 61.91 E-value: 3.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 31 EDLLQEVYIRVLNSYHTFE--GRSSEkTWLLSIARHVAIDWFRKQQtirqRILGTFDWDTQDVRDQQLLPDELAVQHENV 108
Cdd:PRK09648 56 DDVAQEVCLAVITALPRYRdqGRPFL-AFVYGIAAHKVADAHRAAG----RDKAVPTEEVPERPSDDAGPEERALRSESS 130
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 124441994 109 REIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHMEL 167
Cdd:PRK09648 131 NRMRELLDTLPEKQREILILRVVVGLSAEETAEAVGSTPGAVRVAQHRALARLRAEIEA 189
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
13-166 |
3.91e-12 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 62.11 E-value: 3.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 13 HQD-LYQFLFYMVKDKNQTEDLLQEVYIRV---LNSYH--TFEGrssektWLLSIARHVAIDWFRKQQTIRQRILGTfDW 86
Cdd:PRK09647 37 HADrVYRLAYRLSGNQHDAEDLTQETFIRVfrsLQNYQpgTFEG------WLHRITTNLFLDMVRRRARIRMEALPE-DY 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 87 DTQDVRDqqllPDELAVQHENV--REIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKH 164
Cdd:PRK09647 110 DRVPGDE----PNPEQIYHDARldPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQQLRAA 185
|
..
gi 124441994 165 ME 166
Cdd:PRK09647 186 LA 187
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
8-74 |
4.63e-12 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 58.75 E-value: 4.63e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124441994 8 LYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEK--TWLLSIARHVAIDWFRKQQ 74
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPERGVSfsTWLYTIIRNAIIDYLRKQR 69
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
8-170 |
1.43e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 60.46 E-value: 1.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 8 LYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRkQQTIRQRILGtfdwd 87
Cdd:PRK12519 34 LYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRKSSYDPKRGSLSSYLLTLTRSRAIDRLR-SRRSRQRLLE----- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 88 tqdvRDQQLL--------PDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLK 159
Cdd:PRK12519 108 ----RWQQELlgeasedtPLEQASLAERSQRVQTALAQLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKARARQGLL 183
|
170
....*....|.
gi 124441994 160 VLRkhmELLRE 170
Cdd:PRK12519 184 KLR---ELLQD 191
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
3-163 |
2.19e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 59.73 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 3 ETFQLLYDTYHQDLYQFLFYMVkDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRILG 82
Cdd:PRK12518 11 QSFRQLYRRYQQKVRSTLYQLC-GRELLDDLVQEVFLRVWKGLPKLRNPAYFSTWLYRITWNVATDARRQFAQRPSRIQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 83 TFDWDTQdvRDQQLLPDELAVQHENVreIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLR 162
Cdd:PRK12518 90 DSLNDQP--SRPSDTPDLMQLHYQDL--VQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRLFYARRQLR 165
|
.
gi 124441994 163 K 163
Cdd:PRK12518 166 K 166
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
109-162 |
2.94e-11 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 56.34 E-value: 2.94e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 124441994 109 REIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLR 162
Cdd:cd06171 2 ERLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
5-170 |
9.61e-11 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 58.03 E-value: 9.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQtirqrilgtf 84
Cdd:PRK09640 28 YEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKER---------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 85 dWDTQDVRDQQLLPDELAV-QHENVREIYAALDQCTID----QRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLK 159
Cdd:PRK09640 98 -RKRRLMDALSLDPLEEASeEKAPKPEERGGLDRWLVHvnpiDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRALD 176
|
170
....*....|.
gi 124441994 160 VLRKHMELLRE 170
Cdd:PRK09640 177 KLREKFAGLAE 187
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
2-165 |
1.50e-10 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 57.76 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFE-GRSSEKTWLLSIARHVAIDWFRKQQTIRQR- 79
Cdd:PRK09646 29 QDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFDpARGSALAWLLTLAHRRAVDRVRSEQAASQRe 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 80 -ILGTFDWDTQ--DVRDQQLLPDElavqHENVReiyAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHR 156
Cdd:PRK09646 109 vRYGARNVDPAfdQVAEEVEARLE----RERVR---DCLDALTDTQRESVTLAYYGGLTYREVAERLAVPLGTVKTRMRD 181
|
....*....
gi 124441994 157 GLKVLRKHM 165
Cdd:PRK09646 182 GLIRLRDCL 190
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
2-167 |
3.51e-10 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 56.24 E-value: 3.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRkqqtiRQRIL 81
Cdd:TIGR02983 5 EEEFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTYVRWDRIRDPDAPDAYVRRVLVNLARSRWR-----RRRLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 82 gtfDWDTQDVRDQQLlpDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVL 161
Cdd:TIGR02983 80 ---ELPTRELPDAAA--PDPAPDVALRAALARALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRALARL 154
|
....*.
gi 124441994 162 RKHMEL 167
Cdd:TIGR02983 155 RELLEE 160
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
32-166 |
4.22e-10 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 55.75 E-value: 4.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 32 DLLQEVYIRVLNSYhtfeGRSSEKTWLL---SIARHVAIDWFRKQQT-IRQRILGTFDWDTQDVRDQQLL---------- 97
Cdd:PRK09047 9 DIVQDAMIKLAEKY----GDRPAAEWPPlfqRILQNRIHDWFRRQKVrNTWVSLFSSFSDDDDDDDFDPLetldsadega 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124441994 98 --PDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHME 166
Cdd:PRK09047 85 esPADKLERAQVLQLIEEAIQKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKALE 155
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
26-168 |
4.46e-10 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 56.49 E-value: 4.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 26 DKNQTEDLLQEVYIRVLNSYHTFEG-RSSEKTWLLSIARHVAIDWFRKqqTIRQrilgtfdwDTQDVRDQQLLPDELAVQ 104
Cdd:PRK06811 44 YSQLIEECVNDIFLSIWNNIDKFDEeKGSFKKWIAAISKYKAIDYKRK--LTKN--------NEIDSIDEFILISEESIE 113
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124441994 105 H-----ENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHMELL 168
Cdd:PRK06811 114 NeiilkENKEEILKLINDLEKLDREIFIRRYLLGEKIEEIAKKLGLTRSAIDNRLSRGRKKLQKNKLNI 182
|
|
| PRK12517 |
PRK12517 |
RNA polymerase sigma factor; Provisional |
12-166 |
6.92e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183569 [Multi-domain] Cd Length: 188 Bit Score: 55.85 E-value: 6.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 12 YHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQtirqriLGTFDWDTQDV 91
Cdd:PRK12517 32 LHADIYRYAYWLCKDKHIAEDLVQETFLRAWRSLDSLKDEKAAKAWLITILRRENARRFERKQ------FDLVDIEDDSI 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124441994 92 RDQQLLPDELAVQHENVREIYAALDqctIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHME 166
Cdd:PRK12517 106 EDDASHSSEEEMEQEWLRRQIAKLD---PEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFRARNQLKEALE 177
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
23-166 |
8.86e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 55.55 E-value: 8.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 23 MVKDKNQTEDLLQEVYIRVLNSYHTFE-GRSSEKTWLLSIARHVAIDWFRKqqtiRQRILGTFDWDTQDVRDQQLLPDEL 101
Cdd:PRK12537 43 IVRDRALAEDIVHDAFIKIWTGAASFDpARGSARGWIYSVTRHLALNVLRD----TRREVVLDDDAEETAQTLHEIIDDF 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124441994 102 AVqHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHME 166
Cdd:PRK12537 119 DL-WANSGKIHRCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSLKALRECMG 182
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
5-166 |
1.07e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 52.36 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFE-GRSSEKTWLLSIARHVAIDWFRKQQTIRQRIlgT 83
Cdd:PRK12534 27 FEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDpSRARGLTWLAMIARNKAIDHLRANAPQRRNV--A 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 84 FDwDTQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRK 163
Cdd:PRK12534 105 LD-DAGELRAADASPLERTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAKLKA 183
|
...
gi 124441994 164 HME 166
Cdd:PRK12534 184 CLE 186
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
26-194 |
1.41e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 52.42 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 26 DKNQTEDLLQEVYIRVLNSYHTFEGRSSeKTWLLSIARHVAI-DWFRKQQTIRQRILGTFDwDTQDVRDQQLLPDE---L 101
Cdd:PRK12533 41 NASDADDVVQEACMRALRFFDSFRGDNA-RPWLLAIVRHTWYsEWRRRANAHEVAAPDTLD-DADSLDDWQPAGEDplaL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 102 AVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAkalRFSESKVKTTQHRGLKVLRKHMELLREELMDDEVRMER 181
Cdd:PRK12533 119 LLRAEDVRLVNAALAKLPVEYREVLVLRELEDMSYREIA---AIADVPVGTVMSRLARARRRLAALLGGASAAQAAPGER 195
|
170
....*....|...
gi 124441994 182 RTDKGVVKSTSGS 194
Cdd:PRK12533 196 AAGRPRRAPAAGT 208
|
|
| PRK12539 |
PRK12539 |
RNA polymerase sigma factor SigF; |
31-161 |
1.60e-08 |
|
RNA polymerase sigma factor SigF;
Pssm-ID: 237132 [Multi-domain] Cd Length: 184 Bit Score: 52.04 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 31 EDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTirqrilGTFDWDTQDVRDQQLLPDELAVqhENVRE 110
Cdd:PRK12539 53 EDLVQEALMAIHTRRHTYDPEQPLTPWVYAIARYKLIDHLRRTRA------SLADVPIDDADELVAHDDHAAV--ESTLD 124
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 124441994 111 IYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVL 161
Cdd:PRK12539 125 LGRLLARLPEKMRLAIQAVKLEGLSVAEAATRSGMSESAVKVSVHRGLKAL 175
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
23-143 |
1.98e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 51.71 E-value: 1.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 23 MVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRIlgtfdwDTQDVRDQQLLP--DE 100
Cdd:PRK12511 24 LTRDSAEAEDLVHDALVRALERRASFRSGGNLRTWLMSILHNAFIDELRRRRVEARRA------DELAVLADASLPaaQE 97
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 124441994 101 LAVQHENVREIYAALDQctiDQRAVIILRFIQGYSIQETAKAL 143
Cdd:PRK12511 98 HAVRLAQIRDAFFDLPE---EQRAALHLVAIEGLSYQEAAAVL 137
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
23-172 |
2.34e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 51.81 E-value: 2.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 23 MVKDKNQTEDLLQEVYIRVLNSYHTF-EGRSSEKTWLLSIARHVAIDWFRkqqtiRQRILGTFDWDTQDVRDQQLLPDEL 101
Cdd:PRK12524 46 VLGDRAEAEDVTQEAMLRLWRIAPDWrQGEARVSTWLYRVVCNLCTDRLR-----RRRRASVDLDDAPEPADAAPGAEEA 120
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124441994 102 AVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHMELLREEL 172
Cdd:PRK12524 121 LIEGDRMRALDAALAALPERQRQAVVLRHIEGLSNPEIAEVMEIGVEAVESLTARGKRALAALLAGQRAEL 191
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
3-162 |
2.46e-08 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 51.17 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 3 ETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQT----IRQ 78
Cdd:TIGR02989 1 KAFVRLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTNFVAWARGIARNKVLNYRRKLGRdrlvFDD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 79 RILGTFDWDTQDVRDQQLLPDELAVQHenvreiyaALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGL 158
Cdd:TIGR02989 81 DLLEALAAEAEPTEAERLSDDRQALEG--------CLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQRIR 152
|
....
gi 124441994 159 KVLR 162
Cdd:TIGR02989 153 VSLR 156
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
23-169 |
7.54e-08 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 50.04 E-value: 7.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 23 MVKDKNQTEDLLQEVYIRVLNSYHTF-EGRSSEKTWLLSIARHVAIDWFRKQQTIRQRilgtfdwDTQDVRDQQLLPDEL 101
Cdd:PRK05602 40 MLGDPAEAEDVAQETFLRIWKQAPSWrPGEARFDTWLHRVVLNLCYDRLRRRREVPVE-------DAPDVPDPAPGPDAG 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124441994 102 AVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHMELLR 169
Cdd:PRK05602 113 LEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVMDISVDALESLLARGRRALRAQLADLP 180
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
109-161 |
1.33e-07 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 46.30 E-value: 1.33e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 124441994 109 REIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVL 161
Cdd:pfam08281 2 EALLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
15-161 |
7.00e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 47.27 E-value: 7.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 15 DLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVaidwFRKQQTIRQRILGtfDWDTQDVRDQ 94
Cdd:PRK12540 17 SLRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNL----FRSDYRKRRREVE--DADGSYAKTL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124441994 95 QLLPDELAvqHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVL 161
Cdd:PRK12540 91 KSQPGQNA--HLEFEEFRAALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKL 155
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
13-171 |
8.77e-07 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 47.49 E-value: 8.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 13 HQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTI------------RQRI 80
Cdd:PRK12544 28 RKQMIKFATLQLSDLHLAEDAVQEALIGALKNADSFAGRAAFKTWVFAILKNKIIDLLRQKKRHvsassllrdeeeEEDF 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 81 LGTFD----WDTQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHR 156
Cdd:PRK12544 108 EELFDesghWQKDERPQAWGNPEESLEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYR 187
|
170
....*....|....*...
gi 124441994 157 GLKVLRKHME---LLREE 171
Cdd:PRK12544 188 ARLRLRECLEnkwFLKED 205
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
114-163 |
1.80e-06 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 43.19 E-value: 1.80e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 124441994 114 ALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRK 163
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKLRK 50
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
31-150 |
4.80e-06 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 44.68 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 31 EDLLQEVYIRVLNSYHTFEGRSsEKTWLLSIARHVAIDWFRKQqTIRQRILGTFDwDTQDVRDQQLLPDELAVQHENVRE 110
Cdd:PRK07037 26 EDVVQDAFVKLVEAPNQDAVKQ-PVAYLFRIVRNLAIDHYRRQ-ALENKYHGDEE-DGLDVPSPEASPEAALINRDTLRH 102
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 124441994 111 IYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKV 150
Cdd:PRK07037 103 VADALSELPARTRYAFEMYRLHGETQKDIARELGVSPTLV 142
|
|
| PRK12545 |
PRK12545 |
RNA polymerase factor sigma-70; |
14-99 |
5.91e-06 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183584 [Multi-domain] Cd Length: 201 Bit Score: 44.95 E-value: 5.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 14 QDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR-KQQTIRQRILGTfDWDTQDVR 92
Cdd:PRK12545 19 HDLLRFARLQLRDADAAEDAVQEALAAAWSQAGRFAGQSAHKTWVFGILRNKLIDTLRaRQRTVNLSALDA-ELDGEALL 97
|
....*..
gi 124441994 93 DQQLLPD 99
Cdd:PRK12545 98 DRELFKD 104
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
3-166 |
6.96e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 44.54 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 3 ETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEG-RSSEKTWLLSIARHVAIDWFRKQQTIRQRIL 81
Cdd:PRK12531 27 QAFALVFSYYAPKLKQFAMKHVGNEQVAMEMVQETMSTVWQKAHLFDGqKSALSTWIYTIIRNLCFDLLRKQKGKDLHIH 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 82 GTFDWdTQDVRDQQLLpDELAVQHENVRE-IYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKV 160
Cdd:PRK12531 107 ADDIW-PSDYYPPDLV-DHYSPEQDMLKEqVMKFLDRLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSRLRLAVEK 184
|
....*.
gi 124441994 161 LRKHME 166
Cdd:PRK12531 185 LRHSMD 190
|
|
| PRK06704 |
PRK06704 |
RNA polymerase subunit sigma-70; |
13-171 |
1.46e-05 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 180663 [Multi-domain] Cd Length: 228 Bit Score: 44.25 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 13 HQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYhtfegrsSEK----TWLLSIARHVAIDWFRK---QQTIRQRIlgTFD 85
Cdd:PRK06704 27 YGELKRYCTFLTKNKWDGEDLAQETVCKVLQKY-------SNKdicmTLVYKIARNRWLDQIKSksvHEKIRDQI--TFE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 86 WDTQDVRDqqllpdelavQHENVREIYAALDqctIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGlkvlRKHM 165
Cdd:PRK06704 98 EPHEKIAD----------LHEMVGKVLSSLN---VQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRS----RNRL 160
|
....*.
gi 124441994 166 ELLREE 171
Cdd:PRK06704 161 KTVSEE 166
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
31-166 |
2.72e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 42.99 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 31 EDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQ--RILGTFDWD-------------TQDVRDQQ 95
Cdd:PRK12532 34 EDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKvfTLLDDELLDeafeshfsqnghwTPEGQPQH 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124441994 96 LLPDELAVqheNVREIYAALDQCTIDQRA----VIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHME 166
Cdd:PRK12532 114 WNTPEKSL---NNNEFQKILQSCLYNLPEntarVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQ 185
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
16-162 |
2.90e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 43.03 E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 16 LYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQqtirqrilgtfdwdTQDVRDQQ 95
Cdd:PRK12516 23 LRAFAVSLIGRHDRADDLVQDTIMKAWAKQDHFEVGTNMKAWLFTILRNEFYSQMRKR--------------GREVQDTD 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124441994 96 -LLPDELAVQHE-----NVREIYAALDQCTIDQRAVIILRFIQGYSIQETAK----ALRFSESKVKTTQHRGLKVLR 162
Cdd:PRK12516 89 gMFTEQLAVHPSqygtlDLQDFRAALDQLPDDQREAIILVGASGFAYEEAAEicgcAVGTIKSRVNRARQRLQEILQ 165
|
|
| PRK12520 |
PRK12520 |
RNA polymerase sigma factor; Provisional |
16-96 |
9.58e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237126 [Multi-domain] Cd Length: 191 Bit Score: 41.26 E-value: 9.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 16 LYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRILGTFDWDTQDVRDQQ 95
Cdd:PRK12520 15 LLRFARLQLRDPALAEDAVSETLLAVLEHPERFAGQSSLKTYLVGILKHKIIDAIRSGRREVRLSLDDADEQSDDDLFDA 94
|
.
gi 124441994 96 L 96
Cdd:PRK12520 95 L 95
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
3-182 |
1.13e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 41.19 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 3 ETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSE--KTWLLSIARHVAIDWFRKQQTiRQRI 80
Cdd:PRK12542 9 EKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLNTQelKRYILRVAKNKAIDSYRKNKR-HETF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 81 LGTFDWDTQDVRDQQLlpDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGlkv 160
Cdd:PRK12542 88 LEEYERESIEAVDENI--EEWEKRKMSEVQIDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERA--- 162
|
170 180
....*....|....*....|..
gi 124441994 161 lRKHMELLREELMDDEVRMERR 182
Cdd:PRK12542 163 -RKRVQNMIGGIQHDEFKELQR 183
|
|
| PRK09651 |
PRK09651 |
RNA polymerase sigma factor FecI; Provisional |
2-151 |
1.84e-04 |
|
RNA polymerase sigma factor FecI; Provisional
Pssm-ID: 182018 [Multi-domain] Cd Length: 172 Bit Score: 40.18 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 2 EETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRsSEKTWLLSIARHVAIDWFRKqQTIRQRIL 81
Cdd:PRK09651 9 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIR-DPRSFLCTIAKRVMVDLFRR-NALEKAYL 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124441994 82 gtfdwDTQDVRDQQLLP--DELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVK 151
Cdd:PRK09651 87 -----EMLALMPEGGAPspEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVK 153
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
11-164 |
2.09e-04 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 40.08 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 11 TYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSeKTWLLSIARHVAIDWFRKQQTIRQRiLGTFDWDTQD 90
Cdd:PRK09642 3 TYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGL-KTWMARIATNHAIDYKRKKARENEE-LSLCKETEEN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124441994 91 VRDQQLLPDELAVQHENVReIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKH 164
Cdd:PRK09642 81 IKSSHNIEDLLLTKEQKLL-IAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKH 153
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
24-94 |
2.22e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 40.13 E-value: 2.22e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124441994 24 VKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKqqtiRQRILGTFDWDTQDVRDQ 94
Cdd:PRK12530 28 LKDADLAEDVVQEALVSAYKNADSFKGQSALKTWIFAILKNKIIDLIRY----RKRFVNESELIEEDSPNS 94
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
29-165 |
2.79e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 40.17 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 29 QTEDLLQEVYIRVLNSYHTFEG-RSSEKTWLLSIARHVAIDWFRKQQTIRQRILGTFDWDTQDVRDQQLLPDELAVQHEN 107
Cdd:PRK12526 64 QANELVQETMSNVWRKAHLYNGdKGAATTWVYTVMRNAAFDMLRKIKAKKEQNLGDDIWPIEQALAESQSESEEFSDHLM 143
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 124441994 108 VREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHM 165
Cdd:PRK12526 144 DKQILSYIEKLPEAQQTVVKGVYFQELSQEQLAQQLNVPLGTVKSRLRLALAKLKVQM 201
|
|
| PRK12529 |
PRK12529 |
RNA polymerase sigma factor; Provisional |
8-157 |
8.49e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183574 [Multi-domain] Cd Length: 178 Bit Score: 38.38 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 8 LYDTYHQDLYQFLFYMVKD--KNQTEDLLQEVYIRVLNSYHTFEGRSSE--KTWLLSIARHVAIDWfRKQQTIRQRILGT 83
Cdd:PRK12529 18 LYRENHAWLRNWLAYRLRSwgRGVADDLAHDIFLRILASRDGGQREAIRqpRAYLARIANCVLVSW-RRRQSLELAWLEA 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124441994 84 FdwdTQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRG 157
Cdd:PRK12529 97 L---ATLPEPLHPSPEQQSVILETLHEIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQA 167
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
12-165 |
1.08e-03 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 37.83 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 12 YHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNsyhtfegRSSE------KTWLLSIARHVAIDWFRKQQTIRQRILGTFD 85
Cdd:PRK12527 4 YYRELVRFLSARLGNRQAAEDVAHDAYLRVLE-------RSSSaqiehpRAFLYRTALNLVVDRHRRHRVRQAEPLEVLD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 86 wdtQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHM 165
Cdd:PRK12527 77 ---EEERLHSPSPQTRLDLGQRLALLQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRVRM 153
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
16-156 |
1.22e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 37.93 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 16 LYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARhvaiDWFRKQQTIRQRilgtfdwdtqDVRDQQ 95
Cdd:PRK12547 19 LRAFAVSLSSKHDKAEDLVQDTLMKAWAKQDSFEMGTNLKAWLFTILR----NEFYSQMRKRGR----------EVQDSD 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124441994 96 -LLPDELAV---QHENV--REIYAALDQCTIDQRAVIILRFIQGYSIQETAK----ALRFSESKVKTTQHR 156
Cdd:PRK12547 85 gVFTARVAVhpaQYGSLdlQDFKKALNLLSADQREAIILIGASGFSYEDAAAicgcAVGTIKSRVSRARNR 155
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
98-166 |
2.71e-03 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 37.50 E-value: 2.71e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124441994 98 PDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHME 166
Cdd:COG1191 167 PEEELEHEELREALAEAIEQLPERERLVLSLYYFEELTLKEIAEVLGVSESRVSRLHKKALARLREYLK 235
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
16-174 |
3.67e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 36.74 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 16 LYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQtiRQRIlgtfdwDTQDVRDQQ 95
Cdd:PRK12546 20 LRAFAISLTRNVAVADDLVQDTIVKAWTNFDKFQEGTNLRAWLFTILRNTFYSDRRKHK--REVP------DPEGVHAAS 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124441994 96 LLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHRGLKVLRKHMELLREELMD 174
Cdd:PRK12546 92 LAVKPAHDGRLAMSDFRAAFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELLQLEEGEELE 170
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
5-172 |
5.94e-03 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 36.32 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 5 FQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAidwfRKQQTIRQRILGTF 84
Cdd:PRK11923 22 FDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTA----KNHLVSRGRRPPDS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124441994 85 DWDTQDVR----DQQL----LPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSESKVKTTQHR 156
Cdd:PRK11923 98 DVSSEDAEfydgDHALkdieSPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFR 177
|
170
....*....|....*.
gi 124441994 157 GLKVLRKHMELLREEL 172
Cdd:PRK11923 178 AREAIDKALQPLLQES 193
|
|
| |
