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Conserved domains on  [gi|149019901|gb|EDL78049|]
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ets variant gene 5 (ets-related molecule) (predicted) [Rattus norvegicus]

Protein Classification

ETS translocation variant( domain architecture ID 12054215)

ETS translocation variant (ETV) is a transcriptional activator that binds to consensus DNA sequences, such as human ETV1 that binds to the pentanucleotide 5'-CGGA[AT]-3'

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ETS_PEA3_N pfam04621
PEA3 subfamily ETS-domain transcription factor N terminal domain; The N terminus of the PEA3 ...
 1-366 0e+00

PEA3 subfamily ETS-domain transcription factor N terminal domain; The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites.


:

Pssm-ID: 461371  Cd Length: 344  Bit Score: 516.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901    1 MDGFCDQQVPFMVPGKSRSEDCRGRPVIDRKRKFVDTDLAHDSEELFQDLSQLQEAWLAEAQVPDDEQFVPDFQSDNLVL 80
Cdd:pfam04621   1 MDGFYDQQVPFMVPGSSCGEGPLGRPLMDRKRKFMDTELAQDSEELFQDLSQLQETWLAEAQVPDDEQFVPDFQSENLAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901   81 HAPPPTKIKRELHSPSSELSSCSHEQALGAKYGEKCLYNYCAYDRKPPSGFKPLTPPATPLSPTHQNSLFPPPqatlpts 160
Cdd:pfam04621  81 HGPPPAKIKREPQSPSSDLSSCSHEQSFKYPYGEQCLYNYSAYDRKPPSGFKPPTPPSTPVSPLQQHSSLKTP------- 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  161 alapgagpvqgvgPAPTPHSLPEPGSQQQTFAVPRPPHQPLQMPKMMPESQYPSEQRFQRQLSEPCRPFPPQSGVPGDTR 240
Cdd:pfam04621 154 -------------PLQRQPSPLPLMRQSPPFAVPRPPRGYMPMPPSQPSNSYPIEHRFQRQLSEPCLPFPPPEGGPRDGR 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  241 PSYQRQMSEPVVPAAPpplQGFKQEYHDPLYEHGvPGMPGPPAHGFQSPMGIKQEPRDYCADSEVPNCQSPYMR--GRYF 318
Cdd:pfam04621 221 PPYQRQMSEPLVPYPP---QGFKQEYHDPLYEHG-PPPGGPPPHRFPPPMMIKQEPRDYGYDSEVPNCQSSYGRseGFLY 296

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 149019901  319 SSNHEGFTYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRG 366
Cdd:pfam04621 297 PNSHDGFSYDKDPRLFYDDTCVVPEKLEGKVKQEPGVYREGPPYQRRG 344
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 367-452 7.39e-50

erythroblast transformation specific domain; variation of the helix-turn-helix motif


:

Pssm-ID: 197710  Cd Length: 87  Bit Score: 165.52  E-value: 7.39e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901   367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY 445
Cdd:smart00413   1 GIQLWQFLLDLLLDPENSDIIKWTDRdEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLVY 80


                   ....*..
gi 149019901   446 KFVCDPD 452
Cdd:smart00413  81 KFVKNPL 87
 
Name Accession Description Interval E-value
ETS_PEA3_N pfam04621
PEA3 subfamily ETS-domain transcription factor N terminal domain; The N terminus of the PEA3 ...
 1-366 0e+00

PEA3 subfamily ETS-domain transcription factor N terminal domain; The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites.


Pssm-ID: 461371  Cd Length: 344  Bit Score: 516.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901    1 MDGFCDQQVPFMVPGKSRSEDCRGRPVIDRKRKFVDTDLAHDSEELFQDLSQLQEAWLAEAQVPDDEQFVPDFQSDNLVL 80
Cdd:pfam04621   1 MDGFYDQQVPFMVPGSSCGEGPLGRPLMDRKRKFMDTELAQDSEELFQDLSQLQETWLAEAQVPDDEQFVPDFQSENLAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901   81 HAPPPTKIKRELHSPSSELSSCSHEQALGAKYGEKCLYNYCAYDRKPPSGFKPLTPPATPLSPTHQNSLFPPPqatlpts 160
Cdd:pfam04621  81 HGPPPAKIKREPQSPSSDLSSCSHEQSFKYPYGEQCLYNYSAYDRKPPSGFKPPTPPSTPVSPLQQHSSLKTP------- 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  161 alapgagpvqgvgPAPTPHSLPEPGSQQQTFAVPRPPHQPLQMPKMMPESQYPSEQRFQRQLSEPCRPFPPQSGVPGDTR 240
Cdd:pfam04621 154 -------------PLQRQPSPLPLMRQSPPFAVPRPPRGYMPMPPSQPSNSYPIEHRFQRQLSEPCLPFPPPEGGPRDGR 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  241 PSYQRQMSEPVVPAAPpplQGFKQEYHDPLYEHGvPGMPGPPAHGFQSPMGIKQEPRDYCADSEVPNCQSPYMR--GRYF 318
Cdd:pfam04621 221 PPYQRQMSEPLVPYPP---QGFKQEYHDPLYEHG-PPPGGPPPHRFPPPMMIKQEPRDYGYDSEVPNCQSSYGRseGFLY 296

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 149019901  319 SSNHEGFTYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRG 366
Cdd:pfam04621 297 PNSHDGFSYDKDPRLFYDDTCVVPEKLEGKVKQEPGVYREGPPYQRRG 344
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 367-452 7.39e-50

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 165.52  E-value: 7.39e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901   367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY 445
Cdd:smart00413   1 GIQLWQFLLDLLLDPENSDIIKWTDRdEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLVY 80


                   ....*..
gi 149019901   446 KFVCDPD 452
Cdd:smart00413  81 KFVKNPL 87
Ets pfam00178
Ets-domain;
369-447 7.99e-44

Ets-domain;


Pssm-ID: 459700  Cd Length: 80  Bit Score: 149.18  E-value: 7.99e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  369 QLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 447
Cdd:pfam00178   1 QLWQFLLDLLTDPEYSDIIKWTDKeEGEFRLVDPEAVARLWGKRKGNPKMTYEKLSRALRYYYKKGILEKVPGKRLTYRF 80
PHA03247 PHA03247
large tegument protein UL36; Provisional
 128-236 1.45e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  128 PSGFKPLTPPATPLSPTHQNslfPPPQATLPT-SALAPGaGPVQGVGPA------------PTPHSLPEPGSQQQTFAVP 194
Cdd:PHA03247 2824 PAGPLPPPTSAQPTAPPPPP---GPPPPSLPLgGSVAPG-GDVRRRPPSrspaakpaaparPPVRRLARPAVSRSTESFA 2899

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 149019901  195 RPPHQPLQMPKmmPESQYPSEQRFQRQLSEPCRPFPPQSGVP 236
Cdd:PHA03247 2900 LPPDQPERPPQ--PQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
 
Name Accession Description Interval E-value
ETS_PEA3_N pfam04621
PEA3 subfamily ETS-domain transcription factor N terminal domain; The N terminus of the PEA3 ...
 1-366 0e+00

PEA3 subfamily ETS-domain transcription factor N terminal domain; The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites.


Pssm-ID: 461371  Cd Length: 344  Bit Score: 516.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901    1 MDGFCDQQVPFMVPGKSRSEDCRGRPVIDRKRKFVDTDLAHDSEELFQDLSQLQEAWLAEAQVPDDEQFVPDFQSDNLVL 80
Cdd:pfam04621   1 MDGFYDQQVPFMVPGSSCGEGPLGRPLMDRKRKFMDTELAQDSEELFQDLSQLQETWLAEAQVPDDEQFVPDFQSENLAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901   81 HAPPPTKIKRELHSPSSELSSCSHEQALGAKYGEKCLYNYCAYDRKPPSGFKPLTPPATPLSPTHQNSLFPPPqatlpts 160
Cdd:pfam04621  81 HGPPPAKIKREPQSPSSDLSSCSHEQSFKYPYGEQCLYNYSAYDRKPPSGFKPPTPPSTPVSPLQQHSSLKTP------- 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  161 alapgagpvqgvgPAPTPHSLPEPGSQQQTFAVPRPPHQPLQMPKMMPESQYPSEQRFQRQLSEPCRPFPPQSGVPGDTR 240
Cdd:pfam04621 154 -------------PLQRQPSPLPLMRQSPPFAVPRPPRGYMPMPPSQPSNSYPIEHRFQRQLSEPCLPFPPPEGGPRDGR 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  241 PSYQRQMSEPVVPAAPpplQGFKQEYHDPLYEHGvPGMPGPPAHGFQSPMGIKQEPRDYCADSEVPNCQSPYMR--GRYF 318
Cdd:pfam04621 221 PPYQRQMSEPLVPYPP---QGFKQEYHDPLYEHG-PPPGGPPPHRFPPPMMIKQEPRDYGYDSEVPNCQSSYGRseGFLY 296

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 149019901  319 SSNHEGFTYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRG 366
Cdd:pfam04621 297 PNSHDGFSYDKDPRLFYDDTCVVPEKLEGKVKQEPGVYREGPPYQRRG 344
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 367-452 7.39e-50

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 165.52  E-value: 7.39e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901   367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY 445
Cdd:smart00413   1 GIQLWQFLLDLLLDPENSDIIKWTDRdEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLVY 80


                   ....*..
gi 149019901   446 KFVCDPD 452
Cdd:smart00413  81 KFVKNPL 87
Ets pfam00178
Ets-domain;
369-447 7.99e-44

Ets-domain;


Pssm-ID: 459700  Cd Length: 80  Bit Score: 149.18  E-value: 7.99e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  369 QLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 447
Cdd:pfam00178   1 QLWQFLLDLLTDPEYSDIIKWTDKeEGEFRLVDPEAVARLWGKRKGNPKMTYEKLSRALRYYYKKGILEKVPGKRLTYRF 80
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 125-244 8.47e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.49  E-value: 8.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  125 RKPPSGFKPLTPPATPLSPTHQNSLFPPPQATLPTSALAPGAGPVQGVGPAPTPHSLPEPGSQQQTFAVPRPPHQPLQMP 204
Cdd:pfam09770 210 PAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFH 289

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 149019901  205 KMMPESQYPSEQRFQRqlsePCRPFPPQSGVPGDTRPSYQ 244
Cdd:pfam09770 290 QQPPPVPVQPTQILQN----PNRLSAARVGYPQNPQPGVQ 325
PHA03247 PHA03247
large tegument protein UL36; Provisional
 128-236 1.45e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  128 PSGFKPLTPPATPLSPTHQNslfPPPQATLPT-SALAPGaGPVQGVGPA------------PTPHSLPEPGSQQQTFAVP 194
Cdd:PHA03247 2824 PAGPLPPPTSAQPTAPPPPP---GPPPPSLPLgGSVAPG-GDVRRRPPSrspaakpaaparPPVRRLARPAVSRSTESFA 2899

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 149019901  195 RPPHQPLQMPKmmPESQYPSEQRFQRQLSEPCRPFPPQSGVP 236
Cdd:PHA03247 2900 LPPDQPERPPQ--PQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 197-298 2.51e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.92  E-value: 2.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  197 PHQPLQMPKMMPESQYPSEQRFQRQLSEPCRPFPPQSGVPGDTRPSYQRQMSEPVVPAAPPPLQGFK-QEYHDPLYEHGV 275
Cdd:PRK10263  740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQpQQPVAPQPQYQQ 819

                          90       100
                  ....*....|....*....|....
gi 149019901  276 PGMPGPPAHGFQSPMG-IKQEPRD 298
Cdd:PRK10263  820 PQQPVAPQPQYQQPQQpVAPQPQD 843
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 132-287 4.59e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.10  E-value: 4.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  132 KPLTPPATPLSPTHQNSLFPPP----------QATLptSALAPGAGPVQGVGPAPTPHSLP----EPGSQQQTFAVPRPP 197
Cdd:pfam09770 168 KKAAAPAPAPQPAAQPASLPAPsrkmmsleevEAAM--RAQAKKPAQQPAPAPAQPPAAPPaqqaQQQQQFPPQIQQQQQ 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  198 HQPLQMPKMMPESQYPSEQRFQRQLSEPCRPFPPQSGvpgdTRPSYQRQMSEPVVPAAPPPLQ--GFKQEYHDPLYEHGV 275
Cdd:pfam09770 246 PQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQ----PQAQQFHQQPPPVPVQPTQILQnpNRLSAARVGYPQNPQ 321

                         170
                  ....*....|..
gi 149019901  276 PGMPGPPAHGFQ 287
Cdd:pfam09770 322 PGVQPAPAHQAH 333
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 133-230 2.65e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 40.52  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  133 PLTPPATPLSPTHQNSLFPPPQATLPTSALAPGAG--PVQGVGPAPtPHSLPEPGSQQQTFAVPRpPHQPLQ-MPKMMPE 209
Cdd:pfam03154 181 ASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSqpPNQTQSTAA-PHTLIQQTPTLHPQRLPS-PHPPLQpMTQPPPP 258

                          90       100
                  ....*....|....*....|.
gi 149019901  210 SQYPSEQRFQRQLSEPCRPFP 230
Cdd:pfam03154 259 SQVSPQPLPQPSLHGQMPPMP 279
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
125-237 3.57e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 3.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901 125 RKPPSGFKPLTPPATPLSPTHQNSLFPPPQATLPTSALAPGAGPVQGVGPAPTPHSLPEPGSQQQTFAVPRPPHQPLQMP 204
Cdd:PRK12323 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP 480

                         90       100       110
                 ....*....|....*....|....*....|...
gi 149019901 205 kmmPESQYPSEQRFQRQLSEPCRPFPPQSGVPG 237
Cdd:PRK12323 481 ---ARAAPAAAPAPADDDPPPWEELPPEFASPA 510
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 138-296 5.10e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.68  E-value: 5.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  138 ATPLSPTHQNSLFPPPQATL--PTSALAPGAGPVQgvgPAPTPHSLPEPGSQQQTFAVPRPPHQ-PLQMPkMMPESQYPS 214
Cdd:PRK10263  334 AAPVEPVTQTPPVASVDVPPaqPTVAWQPVPGPQT---GEPVIAPAPEGYPQQSQYAQPAVQYNePLQQP-VQPQQPYYA 409

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901  215 EQRFQRQLSEPCRPFPPQSGVPGDTRPSYQRQMSEPVVPAAPPPLQGFKQEYHDPLYEHGVPGMPGPPahgFQSPMGIKQ 294
Cdd:PRK10263  410 PAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPL---YQQPQPVEQ 486


                  ..
gi 149019901  295 EP 296
Cdd:PRK10263  487 QP 488
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
114-246 7.75e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.99  E-value: 7.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901 114 EKCLYNYCAYDRKPPSGfKPLTPPATPLSPthqnSLFPPPQATLPTSALAPGAGPVQgVGPAPTPhSLPEPGSQQQTFAV 193
Cdd:PRK14971 353 ELTLIQLAQLTQKGDDA-SGGRGPKQHIKP----VFTQPAAAPQPSAAAAASPSPSQ-SSAAAQP-SAPQSATQPAGTPP 425

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 149019901 194 PRPPHQPLQMPkMMPESQYPSEQRFQRQLSE-PCRPFPPQSGVPGDTRPSYQRQ 246
Cdd:PRK14971 426 TVSVDPPAAVP-VNPPSTAPQAVRPAQFKEEkKIPVSKVSSLGPSTLRPIQEKA 478
PHA03369 PHA03369
capsid maturational protease; Provisional
 120-221 7.98e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 38.83  E-value: 7.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149019901 120 YCAYDRKPPSgfkplTPPATPLSPTHQNSLFPPPQATLPTSALAPGA-----GPVQGVGPAPTPHSLPEPgsqqqtfavP 194
Cdd:PHA03369 376 TGPADRQRPQ-----RPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSpynpqSPGTSYGPEPVGPVPPQP---------T 441

                         90       100
                 ....*....|....*....|....*..
gi 149019901 195 RPPHQPLQMPKMMPEsQYPSEQRFQRQ 221
Cdd:PHA03369 442 NPYVMPISMANMVYP-GHPQEHGHERK 467
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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