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Conserved domains on  [gi|149023322|gb|EDL80216|]
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attractin, isoform CRA_c [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 135-205 2.05e-14

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 66.67  E-value: 2.05e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149023322 135 CGGRFRLTgSSGFVT--DGPGNYKYKTKCTWLIEGQPNKIMRLRFNHFATE----CSWDHLYVYDGDSIYAPLIAAF 205
Cdd:cd00041    1 CGGTLTAS-TSGTISspNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspnCSYDYLEIYDGPSTSSPLLGRF 76
EGF_2 pfam07974
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
 108-132 4.68e-03

EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.


:

Pssm-ID: 400365  Cd Length: 26  Bit Score: 33.48  E-value: 4.68e-03
                          10        20
                  ....*....|....*....|....*
gi 149023322  108 CVNGGRCNPGTGQCVCPTGWVGEQC 132
Cdd:pfam07974   2 CSGRGTCVNQCGKCVCDSGYQGATC 26
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 135-205 2.05e-14

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 66.67  E-value: 2.05e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149023322 135 CGGRFRLTgSSGFVT--DGPGNYKYKTKCTWLIEGQPNKIMRLRFNHFATE----CSWDHLYVYDGDSIYAPLIAAF 205
Cdd:cd00041    1 CGGTLTAS-TSGTISspNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspnCSYDYLEIYDGPSTSSPLLGRF 76
CUB pfam00431
CUB domain;
135-205 4.50e-11

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 57.69  E-value: 4.50e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149023322  135 CGGRFrlTGSSG--FVTDGPGNYKYKTKCTWLIEGQPNKIMRLRFNHFATE----CSWDHLYVYDGDSIYAPLIAAF 205
Cdd:pfam00431   1 CGGVL--TDSSGsiSSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEdhdeCGYDYVEIRDGPSASSPLLGRF 75
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 152-205 1.43e-10

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 55.86  E-value: 1.43e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 149023322   152 PGNYKYKTKCTWLIEGQPNKIMRLRFNHFATE----CSWDHLYVYDGDSIYAPLIAAF 205
Cdd:smart00042   9 PQSYPNNLDCVWTIRAPPGYRIELQFTDFDLEssdnCEYDYVEIYDGPSASSPLLGRF 66
EGF_2 pfam07974
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
 108-132 4.68e-03

EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.


Pssm-ID: 400365  Cd Length: 26  Bit Score: 33.48  E-value: 4.68e-03
                          10        20
                  ....*....|....*....|....*
gi 149023322  108 CVNGGRCNPGTGQCVCPTGWVGEQC 132
Cdd:pfam07974   2 CSGRGTCVNQCGKCVCDSGYQGATC 26
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
103-135 5.19e-03

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 33.82  E-value: 5.19e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 149023322   103 ECDRPCVNGGRCNPGTGQCVCPTGWVGEQCQHC 135
Cdd:smart00180   2 DCDPGGSASGTCDPDTGQCECKPNVTGRRCDRC 34
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 103-135 5.83e-03

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 33.87  E-value: 5.83e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 149023322 103 ECDRPCVNGGRCNPGTGQCVCPTGWVGEQCQHC 135
Cdd:cd00055    3 DCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRC 35
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 135-205 2.05e-14

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 66.67  E-value: 2.05e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149023322 135 CGGRFRLTgSSGFVT--DGPGNYKYKTKCTWLIEGQPNKIMRLRFNHFATE----CSWDHLYVYDGDSIYAPLIAAF 205
Cdd:cd00041    1 CGGTLTAS-TSGTISspNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspnCSYDYLEIYDGPSTSSPLLGRF 76
CUB pfam00431
CUB domain;
135-205 4.50e-11

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 57.69  E-value: 4.50e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149023322  135 CGGRFrlTGSSG--FVTDGPGNYKYKTKCTWLIEGQPNKIMRLRFNHFATE----CSWDHLYVYDGDSIYAPLIAAF 205
Cdd:pfam00431   1 CGGVL--TDSSGsiSSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEdhdeCGYDYVEIRDGPSASSPLLGRF 75
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 152-205 1.43e-10

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 55.86  E-value: 1.43e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 149023322   152 PGNYKYKTKCTWLIEGQPNKIMRLRFNHFATE----CSWDHLYVYDGDSIYAPLIAAF 205
Cdd:smart00042   9 PQSYPNNLDCVWTIRAPPGYRIELQFTDFDLEssdnCEYDYVEIYDGPSASSPLLGRF 66
EGF_2 pfam07974
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
 108-132 4.68e-03

EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.


Pssm-ID: 400365  Cd Length: 26  Bit Score: 33.48  E-value: 4.68e-03
                          10        20
                  ....*....|....*....|....*
gi 149023322  108 CVNGGRCNPGTGQCVCPTGWVGEQC 132
Cdd:pfam07974   2 CSGRGTCVNQCGKCVCDSGYQGATC 26
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
103-135 5.19e-03

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 33.82  E-value: 5.19e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 149023322   103 ECDRPCVNGGRCNPGTGQCVCPTGWVGEQCQHC 135
Cdd:smart00180   2 DCDPGGSASGTCDPDTGQCECKPNVTGRRCDRC 34
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 103-135 5.83e-03

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 33.87  E-value: 5.83e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 149023322 103 ECDRPCVNGGRCNPGTGQCVCPTGWVGEQCQHC 135
Cdd:cd00055    3 DCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRC 35
Laminin_EGF pfam00053
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
 111-135 8.09e-03

Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.


Pssm-ID: 395007  Cd Length: 49  Bit Score: 33.48  E-value: 8.09e-03
                          10        20
                  ....*....|....*....|....*
gi 149023322  111 GGRCNPGTGQCVCPTGWVGEQCQHC 135
Cdd:pfam00053  10 SDTCDPETGQCLCKPGVTGRHCDRC 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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