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Conserved domains on  [gi|149052561|gb|EDM04378|]
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zinc finger, CCHC domain containing 10, isoform CRA_b [Rattus norvegicus]

Protein Classification

zinc finger CCHC-type containing 10( domain architecture ID 10621603)

zinc finger CCHC-type containing 10 (ZCCHC10) is a p53-interacting partner

Gene Ontology:  GO:0008270|GO:0003676
PubMed:  11179890|12665246|33787465

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCHC_3 pfam13917
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 17-54 1.13e-11

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


:

Pssm-ID: 404753  Cd Length: 41  Bit Score: 56.64  E-value: 1.13e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 149052561   17 NKQHVRCQKCLEFGHWTYECK--GKRKYLHRPSRTAELKK 54
Cdd:pfam13917   1 ANASARCQKCLKKGHWTYECKnaGERVYTARPSRTQQLKN 40
 
Name Accession Description Interval E-value
zf-CCHC_3 pfam13917
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 17-54 1.13e-11

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


Pssm-ID: 404753  Cd Length: 41  Bit Score: 56.64  E-value: 1.13e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 149052561   17 NKQHVRCQKCLEFGHWTYECK--GKRKYLHRPSRTAELKK 54
Cdd:pfam13917   1 ANASARCQKCLKKGHWTYECKnaGERVYTARPSRTQQLKN 40
 
Name Accession Description Interval E-value
zf-CCHC_3 pfam13917
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 17-54 1.13e-11

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


Pssm-ID: 404753  Cd Length: 41  Bit Score: 56.64  E-value: 1.13e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 149052561   17 NKQHVRCQKCLEFGHWTYECK--GKRKYLHRPSRTAELKK 54
Cdd:pfam13917   1 ANASARCQKCLKKGHWTYECKnaGERVYTARPSRTQQLKN 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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