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Conserved domains on  [gi|149058283|gb|EDM09440|]
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mitochondrial ribosomal protein S14 (predicted), isoform CRA_a [Rattus norvegicus]

Protein Classification

uS14 family ribosomal protein( domain architecture ID 2116)

uS14 family ribosomal protein such as bacterial 30S ribosomal protein S14, and eukaryotic 40S ribosomal protein S29

Gene Ontology:  GO:0003735

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsN super family cl00355
30S ribosomal protein S14; Reviewed
 3-95 1.54e-22

30S ribosomal protein S14; Reviewed


The actual alignment was detected with superfamily member PRK08881:

Pssm-ID: 469739  Cd Length: 101  Bit Score: 83.28  E-value: 1.54e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149058283   3 RDVKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLA 82
Cdd:PRK08881   9 REKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELA 88

                         90
                 ....*....|...
gi 149058283  83 DHGLLSGVQRAIW 95
Cdd:PRK08881  89 HRGEIPGVVKASW 101
 
Name Accession Description Interval E-value
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 3-95 1.54e-22

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 83.28  E-value: 1.54e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149058283   3 RDVKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLA 82
Cdd:PRK08881   9 REKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELA 88

                         90
                 ....*....|...
gi 149058283  83 DHGLLSGVQRAIW 95
Cdd:PRK08881  89 HRGEIPGVVKASW 101
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 41-93 2.02e-22

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 81.69  E-value: 2.02e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 149058283  41 EIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRA 93
Cdd:pfam00253  1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKA 53
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 51-95 3.63e-12

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 55.79  E-value: 3.63e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 149058283 51 PVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW 95
Cdd:COG0199  16 PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
 
Name Accession Description Interval E-value
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 3-95 1.54e-22

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 83.28  E-value: 1.54e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149058283   3 RDVKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLA 82
Cdd:PRK08881   9 REKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELA 88

                         90
                 ....*....|...
gi 149058283  83 DHGLLSGVQRAIW 95
Cdd:PRK08881  89 HRGEIPGVVKASW 101
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 41-93 2.02e-22

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 81.69  E-value: 2.02e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 149058283  41 EIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRA 93
Cdd:pfam00253  1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKA 53
rps14 CHL00074
ribosomal protein S14
 3-95 4.82e-15

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 64.44  E-value: 4.82e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149058283   3 RDVKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGdEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLA 82
Cdd:CHL00074   9 REKKRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIHG-KLQSLPRNSAPTRLHNRCFLTGRPRGNYRDFGLSRHVLREMA 87

                         90
                 ....*....|...
gi 149058283  83 DHGLLSGVQRAIW 95
Cdd:CHL00074  88 HACLLPGVTKSSW 100
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 51-95 3.63e-12

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 55.79  E-value: 3.63e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 149058283 51 PVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW 95
Cdd:COG0199  16 PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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