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Conserved domains on  [gi|297340540|gb|EFH70957|]
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hypothetical protein ARALYDRAFT_892926 [Arabidopsis lyrata subsp. lyrata]

Protein Classification

egg cell-secreted family protein( domain architecture ID 10010707)

egg cell-secreted family protein similar to Arabidopsis thaliana egg cell-secreted protein 1.1 that is involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00214 PLN00214
putative protein; Provisional
 1-99 2.52e-67

putative protein; Provisional


:

Pssm-ID: 177800  Cd Length: 115  Bit Score: 197.41  E-value: 2.52e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297340540   1 MVCAFVPAFSVEEAEAKTLWDTCLVKITPKCALNIIAVVFGNGTLIESCCHDLVQEGKVCHDNLIKYIADRPSLVGRETQ 80
Cdd:PLN00214  17 LVCAFVPVFSVEEAEAKSLWNTCLVKITPKCALDIIAVVFENGTLIDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETE 96

                         90
                 ....*....|....*....
gi 297340540  81 YLKKRDDVWSHCVSISKTT 99
Cdd:PLN00214  97 YLKKSDDLWNHCVSISKSA 115
 
Name Accession Description Interval E-value
PLN00214 PLN00214
putative protein; Provisional
 1-99 2.52e-67

putative protein; Provisional


Pssm-ID: 177800  Cd Length: 115  Bit Score: 197.41  E-value: 2.52e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297340540   1 MVCAFVPAFSVEEAEAKTLWDTCLVKITPKCALNIIAVVFGNGTLIESCCHDLVQEGKVCHDNLIKYIADRPSLVGRETQ 80
Cdd:PLN00214  17 LVCAFVPVFSVEEAEAKSLWNTCLVKITPKCALDIIAVVFENGTLIDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETE 96

                         90
                 ....*....|....*....
gi 297340540  81 YLKKRDDVWSHCVSISKTT 99
Cdd:PLN00214  97 YLKKSDDLWNHCVSISKSA 115
Prolamin_like pfam05617
Prolamin-like; Prolamin_like (in which DUF784 and DUF1278 have been merged) is found to be ...
 22-92 2.37e-11

Prolamin-like; Prolamin_like (in which DUF784 and DUF1278 have been merged) is found to be expressed in the plant embryo sac and to be regulated by the Myb98 transcription factor. Computational analysis has revealed that members are homologous to the plant prolamin superfamily (Protease inhibitor-seed storage-LTP family, pfam00234). In contrast to typical prolamin members that have eight conserved Cys residues forming four pairs of disulfide bonds, this domain contains only six conserved Cys residues that may form three pairs of disulfide bonds. The domain may have a potential function in lipid transfer or protection during plant embryo sac development and reproduction.


Pssm-ID: 461693  Cd Length: 70  Bit Score: 54.37  E-value: 2.37e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297340540  22 TCLVKIT--PKCALNIIAVVFGNG-TLIESCCHDLVQEGKVCHDNLIKYIADRPSLVGRetqyLKKRDDVWSHC 92
Cdd:pfam05617  1 KCWSKLSelPGCGDEILLFFLDNGePVGRECCLAILKIGKDCWPAMFKSGFTTYQLKAS----LEKSNKLWNYC 70
 
Name Accession Description Interval E-value
PLN00214 PLN00214
putative protein; Provisional
 1-99 2.52e-67

putative protein; Provisional


Pssm-ID: 177800  Cd Length: 115  Bit Score: 197.41  E-value: 2.52e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297340540   1 MVCAFVPAFSVEEAEAKTLWDTCLVKITPKCALNIIAVVFGNGTLIESCCHDLVQEGKVCHDNLIKYIADRPSLVGRETQ 80
Cdd:PLN00214  17 LVCAFVPVFSVEEAEAKSLWNTCLVKITPKCALDIIAVVFENGTLIDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETE 96

                         90
                 ....*....|....*....
gi 297340540  81 YLKKRDDVWSHCVSISKTT 99
Cdd:PLN00214  97 YLKKSDDLWNHCVSISKSA 115
Prolamin_like pfam05617
Prolamin-like; Prolamin_like (in which DUF784 and DUF1278 have been merged) is found to be ...
 22-92 2.37e-11

Prolamin-like; Prolamin_like (in which DUF784 and DUF1278 have been merged) is found to be expressed in the plant embryo sac and to be regulated by the Myb98 transcription factor. Computational analysis has revealed that members are homologous to the plant prolamin superfamily (Protease inhibitor-seed storage-LTP family, pfam00234). In contrast to typical prolamin members that have eight conserved Cys residues forming four pairs of disulfide bonds, this domain contains only six conserved Cys residues that may form three pairs of disulfide bonds. The domain may have a potential function in lipid transfer or protection during plant embryo sac development and reproduction.


Pssm-ID: 461693  Cd Length: 70  Bit Score: 54.37  E-value: 2.37e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297340540  22 TCLVKIT--PKCALNIIAVVFGNG-TLIESCCHDLVQEGKVCHDNLIKYIADRPSLVGRetqyLKKRDDVWSHC 92
Cdd:pfam05617  1 KCWSKLSelPGCGDEILLFFLDNGePVGRECCLAILKIGKDCWPAMFKSGFTTYQLKAS----LEKSNKLWNYC 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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