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Conserved domains on  [gi|2459607099|gb|KAJ6892963|]
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hypothetical protein NC651_026007 [Populus alba x Populus x berolinensis]

Protein Classification

DUF4283 domain-containing protein( domain architecture ID 108667)

DUF4283 domain-containing protein with a zinc-knuckle zinc-binding motif; similar to Arabidopsis thaliana protein At4g02000

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4283 super family cl16623
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 1-64 1.95e-16

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


The actual alignment was detected with superfamily member pfam14111:

Pssm-ID: 464086  Cd Length: 145  Bit Score: 75.38  E-value: 1.95e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2459607099   1 MPEYFSFGKDEMACVPVWVKFPNLPLKCWSPRCLAKIASKLGTPIQSDQLTCNMLRISYARVLV 64
Cdd:pfam14111  82 WSPDFKPTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 super family cl18687
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 66-112 2.20e-03

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


The actual alignment was detected with superfamily member pfam14392:

Pssm-ID: 433930  Cd Length: 49  Bit Score: 35.77  E-value: 2.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2459607099  66 LDLSVDLKSSIAINLPNGTTLNQPVIYETLPRFCTLCKVLGHKTGAC 112
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFC 47
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 1-64 1.95e-16

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 75.38  E-value: 1.95e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2459607099   1 MPEYFSFGKDEMACVPVWVKFPNLPLKCWSPRCLAKIASKLGTPIQSDQLTCNMLRISYARVLV 64
Cdd:pfam14111  82 WSPDFKPTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 66-112 2.20e-03

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 35.77  E-value: 2.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2459607099  66 LDLSVDLKSSIAINLPNGTTLNQPVIYETLPRFCTLCKVLGHKTGAC 112
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFC 47
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 1-64 1.95e-16

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 75.38  E-value: 1.95e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2459607099   1 MPEYFSFGKDEMACVPVWVKFPNLPLKCWSPRCLAKIASKLGTPIQSDQLTCNMLRISYARVLV 64
Cdd:pfam14111  82 WSPDFKPTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 66-112 2.20e-03

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 35.77  E-value: 2.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2459607099  66 LDLSVDLKSSIAINLPNGTTLNQPVIYETLPRFCTLCKVLGHKTGAC 112
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFC 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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