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Conserved domains on  [gi|2459666024|gb|KAJ6950907|]
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hypothetical protein NC651_004550 [Populus alba x Populus x berolinensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PP2Cc super family cl00120
Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and ...
 1-39 1.06e-10

Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.


The actual alignment was detected with superfamily member cd00143:

Pssm-ID: 469621 [Multi-domain]  Cd Length: 254  Bit Score: 53.48  E-value: 1.06e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2459666024   1 MARAFGDGRLKEHITSEPDIMIEHIDEDTGFITLGSDGL 39
Cdd:cd00143   167 VTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGL 205
 
Name Accession Description Interval E-value
PP2Cc cd00143
Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and ...
 1-39 1.06e-10

Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.


Pssm-ID: 238083 [Multi-domain]  Cd Length: 254  Bit Score: 53.48  E-value: 1.06e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2459666024   1 MARAFGDGRLKEHITSEPDIMIEHIDEDTGFITLGSDGL 39
Cdd:cd00143   167 VTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGL 205
PP2Cc smart00332
Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and ...
 1-39 2.09e-08

Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.


Pssm-ID: 214625 [Multi-domain]  Cd Length: 252  Bit Score: 47.37  E-value: 2.09e-08
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2459666024    1 MARAFGDGRLKEHITSEPDIMIEHIDEDTGFITLGSDGL 39
Cdd:smart00332 168 LSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGL 206
PP2C pfam00481
Protein phosphatase 2C; Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine ...
 1-42 2.84e-08

Protein phosphatase 2C; Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.


Pssm-ID: 395385  Cd Length: 252  Bit Score: 46.95  E-value: 2.84e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2459666024   1 MARAFGDGRLKE---HITSEPDIMIEHIDEDTGFITLGSDGLLKV 42
Cdd:pfam00481 168 VSRAFGDFELKPgeqAVSAEPDITSHTITEDDEFLILACDGLWDV 212
 
Name Accession Description Interval E-value
PP2Cc cd00143
Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and ...
 1-39 1.06e-10

Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.


Pssm-ID: 238083 [Multi-domain]  Cd Length: 254  Bit Score: 53.48  E-value: 1.06e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2459666024   1 MARAFGDGRLKEHITSEPDIMIEHIDEDTGFITLGSDGL 39
Cdd:cd00143   167 VTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGL 205
PP2Cc smart00332
Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and ...
 1-39 2.09e-08

Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.


Pssm-ID: 214625 [Multi-domain]  Cd Length: 252  Bit Score: 47.37  E-value: 2.09e-08
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2459666024    1 MARAFGDGRLKEHITSEPDIMIEHIDEDTGFITLGSDGL 39
Cdd:smart00332 168 LSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGL 206
PP2C pfam00481
Protein phosphatase 2C; Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine ...
 1-42 2.84e-08

Protein phosphatase 2C; Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.


Pssm-ID: 395385  Cd Length: 252  Bit Score: 46.95  E-value: 2.84e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2459666024   1 MARAFGDGRLKE---HITSEPDIMIEHIDEDTGFITLGSDGLLKV 42
Cdd:pfam00481 168 VSRAFGDFELKPgeqAVSAEPDITSHTITEDDEFLILACDGLWDV 212
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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