NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|198278505|ref|NP_001094004|]
View 

large ribosomal subunit protein uL30 [Rattus norvegicus]

Protein Classification

uL30 family ribosomal protein( domain architecture ID 11492225)

uL30 family ribosomal protein binds to G-rich structures in 28S rRNA and in mRNAs, plays a regulatory role in the translation apparatus and inhibits cell-free translation of mRNAs

Gene Ontology:  GO:0003735|GO:0003723
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
uL30_euk TIGR01310
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ...
 28-260 2.58e-107

60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).


:

Pssm-ID: 273548 [Multi-domain]  Cd Length: 235  Bit Score: 310.06  E-value: 2.58e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505   28 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRI 107
Cdd:TIGR01310   1 ELLLKKRKANQELAVAAAKQAKAKKKANKKKRKDYFKRAESFVKEYRKAERKIIRLKRLAKKPGKFYVPAEHKLVFVIRI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505  108 RGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLV 187
Cdd:TIGR01310  81 KGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLEMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNAII 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 198278505  188 ARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGG--MKKKTTHFVEGGDAGNREDQINRLIRRMN 260
Cdd:TIGR01310 161 EQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGfgKRKKVKHFIEGGDFGNREDHINELIKKMN 235
 
Name Accession Description Interval E-value
uL30_euk TIGR01310
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ...
 28-260 2.58e-107

60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).


Pssm-ID: 273548 [Multi-domain]  Cd Length: 235  Bit Score: 310.06  E-value: 2.58e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505   28 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRI 107
Cdd:TIGR01310   1 ELLLKKRKANQELAVAAAKQAKAKKKANKKKRKDYFKRAESFVKEYRKAERKIIRLKRLAKKPGKFYVPAEHKLVFVIRI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505  108 RGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLV 187
Cdd:TIGR01310  81 KGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLEMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNAII 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 198278505  188 ARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGG--MKKKTTHFVEGGDAGNREDQINRLIRRMN 260
Cdd:TIGR01310 161 EQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGfgKRKKVKHFIEGGDFGNREDHINELIKKMN 235
Ribosomal_L7_archeal_euk cd01657
Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds ...
 101-260 3.09e-89

Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.


Pssm-ID: 100099  Cd Length: 159  Bit Score: 261.31  E-value: 3.09e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505 101 LAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIA 180
Cdd:cd01657    1 LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYKRGRLKGNGQRIP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505 181 LTDNSLVARSLgKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260
Cdd:cd01657   81 LTDNYLVEKTL-KKGIICIEDLAHEIYTGGPNFKEVNNFLPPFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI 159
rpl30p PRK06049
50S ribosomal protein L30P; Reviewed
 104-259 5.86e-25

50S ribosomal protein L30P; Reviewed


Pssm-ID: 235683  Cd Length: 154  Bit Score: 96.80  E-value: 5.86e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505 104 VIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKriaLTD 183
Cdd:PRK06049   5 VIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLAELLRKRGRLEGNKK---LTD 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 198278505 184 nSLVARSLGKFGIicmEDLIhEIYTVGK-RFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 259
Cdd:PRK06049  82 -EYVKENTGYDSI---EELA-EALVEGEiKLKDLPGLKPVFRLHPPRGGFGGIKRPFKEGGELGYRGEKINELLRRM 153
Ribosomal_L30_N pfam08079
Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal ...
 26-97 2.53e-24

Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018.


Pssm-ID: 462360  Cd Length: 72  Bit Score: 92.64  E-value: 2.53e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 198278505   26 VPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPA 97
Cdd:pfam08079   1 VPESLLKKRKRNEKLKAERAKKALARKKANKKKRKLIFKRAEKYVKEYRRKERDEIRLKREAKKAGNFYVPA 72
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 104-155 1.10e-05

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 41.95  E-value: 1.10e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 198278505 104 VIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWG 155
Cdd:COG1841    6 VTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVE 57
 
Name Accession Description Interval E-value
uL30_euk TIGR01310
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ...
 28-260 2.58e-107

60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).


Pssm-ID: 273548 [Multi-domain]  Cd Length: 235  Bit Score: 310.06  E-value: 2.58e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505   28 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRI 107
Cdd:TIGR01310   1 ELLLKKRKANQELAVAAAKQAKAKKKANKKKRKDYFKRAESFVKEYRKAERKIIRLKRLAKKPGKFYVPAEHKLVFVIRI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505  108 RGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLV 187
Cdd:TIGR01310  81 KGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLEMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNAII 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 198278505  188 ARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGG--MKKKTTHFVEGGDAGNREDQINRLIRRMN 260
Cdd:TIGR01310 161 EQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGfgKRKKVKHFIEGGDFGNREDHINELIKKMN 235
Ribosomal_L7_archeal_euk cd01657
Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds ...
 101-260 3.09e-89

Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.


Pssm-ID: 100099  Cd Length: 159  Bit Score: 261.31  E-value: 3.09e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505 101 LAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIA 180
Cdd:cd01657    1 LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYKRGRLKGNGQRIP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505 181 LTDNSLVARSLgKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260
Cdd:cd01657   81 LTDNYLVEKTL-KKGIICIEDLAHEIYTGGPNFKEVNNFLPPFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI 159
rpl30p PRK06049
50S ribosomal protein L30P; Reviewed
 104-259 5.86e-25

50S ribosomal protein L30P; Reviewed


Pssm-ID: 235683  Cd Length: 154  Bit Score: 96.80  E-value: 5.86e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505 104 VIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKriaLTD 183
Cdd:PRK06049   5 VIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLAELLRKRGRLEGNKK---LTD 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 198278505 184 nSLVARSLGKFGIicmEDLIhEIYTVGK-RFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 259
Cdd:PRK06049  82 -EYVKENTGYDSI---EELA-EALVEGEiKLKDLPGLKPVFRLHPPRGGFGGIKRPFKEGGELGYRGEKINELLRRM 153
Ribosomal_L30_N pfam08079
Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal ...
 26-97 2.53e-24

Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018.


Pssm-ID: 462360  Cd Length: 72  Bit Score: 92.64  E-value: 2.53e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 198278505   26 VPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPA 97
Cdd:pfam08079   1 VPESLLKKRKRNEKLKAERAKKALARKKANKKKRKLIFKRAEKYVKEYRRKERDEIRLKREAKKAGNFYVPA 72
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 103-155 1.69e-16

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 71.28  E-value: 1.69e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 198278505 103 FVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWG 155
Cdd:cd00355    1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 102-152 4.82e-16

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 70.03  E-value: 4.82e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 198278505  102 AFVIRIRGINGVSPKVRKVLQLLRLRQIfNGTFVKLNKASVN-MLRIVEPYI 152
Cdd:pfam00327   1 LKVTRIRSIIGRPPKQRKTLKALGLRKI-NGVVVKEDTPSIRgMLRKVKHLV 51
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 104-155 1.10e-05

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 41.95  E-value: 1.10e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 198278505 104 VIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWG 155
Cdd:COG1841    6 VTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVE 57
pyrC PRK00369
dihydroorotase; Provisional
 27-128 5.64e-03

dihydroorotase; Provisional


Pssm-ID: 234738 [Multi-domain]  Cd Length: 392  Bit Score: 37.82  E-value: 5.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 198278505  27 PETLKKK--RRNFAE---LKVKRLRKKFALKTLRKARRKLIYEKAK-HYHKEYRQMYRTEI---RMARMARKAGnFYVPA 97
Cdd:PRK00369 138 PEDLEREetFRVLLKsrkLKILHPEVPLALKSNRKLRRNCWYEIAAlYYVKDYQNVHITHAsnpRTVRLAKELG-FTVDI 216

                         90       100       110
                 ....*....|....*....|....*....|..
gi 198278505  98 EPKLAFVIRIRG-INGVSPKVRKVLQLLRLRQ 128
Cdd:PRK00369 217 TPHHLLVNGEKDcLTKVNPPIRDINERLWLLQ 248
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH