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Conserved domains on  [gi|157822395|ref|NP_001101302|]
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prostaglandin E synthase 2 [Rattus norvegicus]

Protein Classification

prostaglandin E synthase 2( domain architecture ID 10122593)

prostaglandin E synthase 2, a glutathione S-transferase (GST) family protein, is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GST_C_mPGES2 cd03197
C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2; Glutathione ...
223-371 5.04e-88

C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2; Glutathione S-transferase (GST) C-terminal domain family, microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminal GST-like domain contains two structural domains, an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between the two structural domains.


:

Pssm-ID: 198306  Cd Length: 149  Bit Score: 262.54  E-value: 5.04e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 223 GKEARTEEMKWRQWADDWLVHLISPNVYRTPAEALASFDYIVREGKFGAVEATMAKYVGAAAMYFISKRLKSRHHLQDDV 302
Cdd:cd03197    1 AQLADPEEKKWRKWVDDVLVHLLSPNIYRTFSEALQAFDYITTVGNFGPWERIVAKYVGAAAMYLISKRLKKKRNIKDDV 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395 303 RVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLEAFDDLMRHSHIQPWYLRMERAIKE 371
Cdd:cd03197   81 RESLYDALNDWVKALGKKRKFHGGSKPNLADLAVYGVLRSIEGLDAFKDVLANTKIGPWYERMKEAVGS 149
GST_N_mPGES2 cd03040
GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a ...
100-176 1.04e-45

GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.


:

Pssm-ID: 239338  Cd Length: 77  Bit Score: 151.41  E-value: 1.04e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157822395 100 QLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIKFSSYRKVPILVAQEGDSLQQLNDSSVIISALKTYLV 176
Cdd:cd03040    1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77
 
Name Accession Description Interval E-value
GST_C_mPGES2 cd03197
C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2; Glutathione ...
223-371 5.04e-88

C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2; Glutathione S-transferase (GST) C-terminal domain family, microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminal GST-like domain contains two structural domains, an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between the two structural domains.


Pssm-ID: 198306  Cd Length: 149  Bit Score: 262.54  E-value: 5.04e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 223 GKEARTEEMKWRQWADDWLVHLISPNVYRTPAEALASFDYIVREGKFGAVEATMAKYVGAAAMYFISKRLKSRHHLQDDV 302
Cdd:cd03197    1 AQLADPEEKKWRKWVDDVLVHLLSPNIYRTFSEALQAFDYITTVGNFGPWERIVAKYVGAAAMYLISKRLKKKRNIKDDV 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395 303 RVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLEAFDDLMRHSHIQPWYLRMERAIKE 371
Cdd:cd03197   81 RESLYDALNDWVKALGKKRKFHGGSKPNLADLAVYGVLRSIEGLDAFKDVLANTKIGPWYERMKEAVGS 149
GST_N_mPGES2 cd03040
GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a ...
100-176 1.04e-45

GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.


Pssm-ID: 239338  Cd Length: 77  Bit Score: 151.41  E-value: 1.04e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157822395 100 QLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIKFSSYRKVPILVAQEGDSLQQLNDSSVIISALKTYLV 176
Cdd:cd03040    1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77
Glutaredoxin pfam00462
Glutaredoxin;
102-151 9.04e-09

Glutaredoxin;


Pssm-ID: 425695 [Multi-domain]  Cd Length: 60  Bit Score: 51.35  E-value: 9.04e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 157822395  102 TLYQYKTCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTEIK-FSSYRKVPILV 151
Cdd:pfam00462   2 VLYTKPTCPFCKRAKRLLKSLGVDFEEIDVdeDPEIREELKeLSGWPTVPQVF 54
GrxC COG0695
Glutaredoxin [Posttranslational modification, protein turnover, chaperones];
100-151 2.65e-08

Glutaredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440459 [Multi-domain]  Cd Length: 74  Bit Score: 50.20  E-value: 2.65e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 157822395 100 QLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTE-IKFSSYRKVPILV 151
Cdd:COG0695    1 KVTLYTTPGCPYCARAKRLLDEKGIPYEEIDVdeDPEAREElRERSGRRTVPVIF 55
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
101-366 6.36e-07

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 49.51  E-value: 6.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 101 LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTE-----IKFSSYRKVPILVaqEGDslQQLNDSSVIIsalkTYl 175
Cdd:COG0625    2 MKLYGSPPSPNSRRVRIALEEKGLPYELVPVDLAKGEQkspefLALNPLGKVPVLV--DDG--LVLTESLAIL----EY- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 176 vsgqpLEEIityYPpmkamndqgkevtefgnkywlmldqkEAQQMYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPAE 255
Cdd:COG0625   73 -----LAER---YP--------------------------EPPLLPADPAARARVRQWLAWADGDLHPALRNLLERLAPE 118
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 256 alasfdyivregkfgAVEATMAKYVGAAAMYF--ISKRLksrhhlqddvrvdlyeaankwvtavgKDRPFMGGQKPNLAD 333
Cdd:COG0625  119 ---------------KDPAAIARARAELARLLavLEARL--------------------------AGGPYLAGDRFSIAD 157
                        250       260       270
                 ....*....|....*....|....*....|...
gi 157822395 334 LAVYGVLRVMEGLEafDDLMRHSHIQPWYLRME 366
Cdd:COG0625  158 IALAPVLRRLDRLG--LDLADYPNLAAWLARLA 188
arsC_related TIGR01617
transcriptional regulator, Spx/MgsR family; This model represents a portion of the proteins ...
101-164 8.37e-04

transcriptional regulator, Spx/MgsR family; This model represents a portion of the proteins within the larger set covered by pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B. [Regulatory functions, DNA interactions]


Pssm-ID: 273720  Cd Length: 117  Bit Score: 38.95  E-value: 8.37e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395  101 LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTEIKF---SSYRKVPILVAQEGDSLQQLNDS 164
Cdd:TIGR01617   1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIgeDGPTREELLDilsLLEDGIDPLLNTRGQSYRALNTS 69
 
Name Accession Description Interval E-value
GST_C_mPGES2 cd03197
C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2; Glutathione ...
223-371 5.04e-88

C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2; Glutathione S-transferase (GST) C-terminal domain family, microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminal GST-like domain contains two structural domains, an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between the two structural domains.


Pssm-ID: 198306  Cd Length: 149  Bit Score: 262.54  E-value: 5.04e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 223 GKEARTEEMKWRQWADDWLVHLISPNVYRTPAEALASFDYIVREGKFGAVEATMAKYVGAAAMYFISKRLKSRHHLQDDV 302
Cdd:cd03197    1 AQLADPEEKKWRKWVDDVLVHLLSPNIYRTFSEALQAFDYITTVGNFGPWERIVAKYVGAAAMYLISKRLKKKRNIKDDV 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395 303 RVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLEAFDDLMRHSHIQPWYLRMERAIKE 371
Cdd:cd03197   81 RESLYDALNDWVKALGKKRKFHGGSKPNLADLAVYGVLRSIEGLDAFKDVLANTKIGPWYERMKEAVGS 149
GST_N_mPGES2 cd03040
GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a ...
100-176 1.04e-45

GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.


Pssm-ID: 239338  Cd Length: 77  Bit Score: 151.41  E-value: 1.04e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157822395 100 QLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIKFSSYRKVPILVAQEGDSLQQLNDSSVIISALKTYLV 176
Cdd:cd03040    1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77
GST_N_family cd00570
Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic ...
101-168 3.25e-10

Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxin 2 and stringent starvation protein A.


Pssm-ID: 238319 [Multi-domain]  Cd Length: 71  Bit Score: 55.66  E-value: 3.25e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157822395 101 LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIKF---SSYRKVPILVaqEGDslQQLNDSSVII 168
Cdd:cd00570    1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFlalNPLGKVPVLE--DGG--LVLTESLAIL 67
Glutaredoxin pfam00462
Glutaredoxin;
102-151 9.04e-09

Glutaredoxin;


Pssm-ID: 425695 [Multi-domain]  Cd Length: 60  Bit Score: 51.35  E-value: 9.04e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 157822395  102 TLYQYKTCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTEIK-FSSYRKVPILV 151
Cdd:pfam00462   2 VLYTKPTCPFCKRAKRLLKSLGVDFEEIDVdeDPEIREELKeLSGWPTVPQVF 54
GST_N_3 pfam13417
Glutathione S-transferase, N-terminal domain;
103-168 1.69e-08

Glutathione S-transferase, N-terminal domain;


Pssm-ID: 433190 [Multi-domain]  Cd Length: 75  Bit Score: 51.07  E-value: 1.69e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157822395  103 LYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPV--RRTEIKFSSYRKVPILVaQEGDSLQqlnDSSVII 168
Cdd:pfam13417   1 LYGFPGSPYARRVRIALNEKGLPYEFVPIPPGdhPPELLAKNPLGKVPVLE-DDGGILC---ESLAII 64
GrxC COG0695
Glutaredoxin [Posttranslational modification, protein turnover, chaperones];
100-151 2.65e-08

Glutaredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440459 [Multi-domain]  Cd Length: 74  Bit Score: 50.20  E-value: 2.65e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 157822395 100 QLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTE-IKFSSYRKVPILV 151
Cdd:COG0695    1 KVTLYTTPGCPYCARAKRLLDEKGIPYEEIDVdeDPEAREElRERSGRRTVPVIF 55
GST_N_2 pfam13409
Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.
108-171 1.65e-07

Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.


Pssm-ID: 433184 [Multi-domain]  Cd Length: 68  Bit Score: 48.01  E-value: 1.65e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157822395  108 TCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTE--IKFSSYRKVPILVAQEGDSlqqLNDSSVIISAL 171
Cdd:pfam13409   1 FSPFSHRVRLALEEKGLPYEIELVdlDPKDKPPelLALNPLGTVPVLVLPDGTV---LTDSLVILEYL 65
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
101-366 6.36e-07

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 49.51  E-value: 6.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 101 LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTE-----IKFSSYRKVPILVaqEGDslQQLNDSSVIIsalkTYl 175
Cdd:COG0625    2 MKLYGSPPSPNSRRVRIALEEKGLPYELVPVDLAKGEQkspefLALNPLGKVPVLV--DDG--LVLTESLAIL----EY- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 176 vsgqpLEEIityYPpmkamndqgkevtefgnkywlmldqkEAQQMYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPAE 255
Cdd:COG0625   73 -----LAER---YP--------------------------EPPLLPADPAARARVRQWLAWADGDLHPALRNLLERLAPE 118
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822395 256 alasfdyivregkfgAVEATMAKYVGAAAMYF--ISKRLksrhhlqddvrvdlyeaankwvtavgKDRPFMGGQKPNLAD 333
Cdd:COG0625  119 ---------------KDPAAIARARAELARLLavLEARL--------------------------AGGPYLAGDRFSIAD 157
                        250       260       270
                 ....*....|....*....|....*....|...
gi 157822395 334 LAVYGVLRVMEGLEafDDLMRHSHIQPWYLRME 366
Cdd:COG0625  158 IALAPVLRRLDRLG--LDLADYPNLAAWLARLA 188
GST_N_Metaxin_like cd03080
GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, ...
101-172 1.40e-05

GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. elegans. The fax gene of Drosophila was identified as a genetic modifier of Abelson (Abl) tyrosine kinase. The fax protein is localized in cellular membranes and is expressed in embryonic mesoderm and axons of the central nervous system.


Pssm-ID: 239378 [Multi-domain]  Cd Length: 75  Bit Score: 42.61  E-value: 1.40e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395 101 LTLYQYKTC-------PFCSKVRAFLDFHSLPYQVVEVNPVRRteikfSSYRKVPILVaqegDSLQQLNDSSVIISALK 172
Cdd:cd03080    2 ITLYQFPRAfgvpslsPFCLKVETFLRMAGIPYENKFGGLAKR-----SPKGKLPFIE----LNGEKIADSELIIDHLE 71
NrdH cd02976
NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active ...
101-151 6.72e-05

NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.


Pssm-ID: 239274 [Multi-domain]  Cd Length: 73  Bit Score: 40.67  E-value: 6.72e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157822395 101 LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTEIK-FSSYRKVPILV 151
Cdd:cd02976    2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVdeDPEALEELKkLNGYRSVPVVV 55
GST_N_GRX2 cd03037
GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. ...
103-155 2.53e-04

GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.


Pssm-ID: 239335 [Multi-domain]  Cd Length: 71  Bit Score: 38.92  E-value: 2.53e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157822395 103 LYQYKTCPFCSKVRAFLDFHSLPY-QVVEVNPVRRTEIKFSSYRKVPILVAQEG 155
Cdd:cd03037    3 LYIYEHCPFCVKARMIAGLKNIPVeQIILQNDDEATPIRMIGAKQVPILEKDDG 56
GST_C_family cd00299
C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione ...
299-365 2.70e-04

C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases.


Pssm-ID: 198286 [Multi-domain]  Cd Length: 100  Bit Score: 39.79  E-value: 2.70e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157822395 299 QDDVRVDLYEAANKWVTAVGKdRPFMGGQKPNLADLAVYGVLRVMEGL-EAFDDLMRHSHIQPWYLRM 365
Cdd:cd00299   34 VEAAREELPALLAALEQLLAG-RPYLAGDQFSLADVALAPVLARLEALgPYYDLLDEYPRLKAWYDRL 100
GrxB COG2999
Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones];
103-155 4.94e-04

Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442237 [Multi-domain]  Cd Length: 215  Bit Score: 40.98  E-value: 4.94e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395 103 LYQYKTCPFCSKVRAFLDFHSLPYQVV------EVNPVRRTEIKfssyrKVPILVAQEG 155
Cdd:COG2999    3 LYIYDHCPFCVRARMIFGLKNIPVELIvllnddEETPIRMIGKK-----MVPILEKDDG 56
GST_N_Metaxin cd03054
GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a ...
101-168 5.67e-04

GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.


Pssm-ID: 239352 [Multi-domain]  Cd Length: 72  Bit Score: 37.98  E-value: 5.67e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157822395 101 LTLYQYKT-------CPFCSKVRAFLDFHSLPYQVVEVNPVRRteikfSSYRKVPILVaqegDSLQQLNDSSVII 168
Cdd:cd03054    1 LELYQWGRafglpslSPECLKVETYLRMAGIPYEVVFSSNPWR-----SPTGKLPFLE----LNGEKIADSEKII 66
arsC_related TIGR01617
transcriptional regulator, Spx/MgsR family; This model represents a portion of the proteins ...
101-164 8.37e-04

transcriptional regulator, Spx/MgsR family; This model represents a portion of the proteins within the larger set covered by pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B. [Regulatory functions, DNA interactions]


Pssm-ID: 273720  Cd Length: 117  Bit Score: 38.95  E-value: 8.37e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395  101 LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTEIKF---SSYRKVPILVAQEGDSLQQLNDS 164
Cdd:TIGR01617   1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIgeDGPTREELLDilsLLEDGIDPLLNTRGQSYRALNTS 69
GST_N_4 pfam17172
Glutathione S-transferase N-terminal domain; This domain is homologous to pfam02798.
110-173 3.13e-03

Glutathione S-transferase N-terminal domain; This domain is homologous to pfam02798.


Pssm-ID: 465370 [Multi-domain]  Cd Length: 97  Bit Score: 36.79  E-value: 3.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157822395  110 PFCSKVRAFLDFHSLPYQVVEvnpvrRTEIKFSSYRKVPILVaqegDSLQQLNDSSVIISALKT 173
Cdd:pfam17172   1 PFCLKVETYLRMAGIPYEVEP-----SSNPSASPKGKLPFIE----LNGDLIADSEFIIEFLKE 55
GST_N_SspA cd03059
GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP) ...
101-167 3.44e-03

GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.


Pssm-ID: 239357 [Multi-domain]  Cd Length: 73  Bit Score: 35.77  E-value: 3.44e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822395 101 LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTE--IKFSSYRKVPILVAQEgdslQQLNDSSVI 167
Cdd:cd03059    1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEdlAELNPYGTVPTLVDRD----LVLYESRII 65
GRX_family cd02066
Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins ...
108-150 9.94e-03

Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family.


Pssm-ID: 239017 [Multi-domain]  Cd Length: 72  Bit Score: 34.75  E-value: 9.94e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 157822395 108 TCPFCSKVRAFLDFHSLPYQVVEV--NPVRRTEIK-FSSYRKVPIL 150
Cdd:cd02066    9 TCPYCKRAKRLLESLGIEFEEIDIleDGELREELKeLSGWPTVPQI 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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