NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|157821779|ref|NP_001102129|]
View 

dynactin subunit 3 [Rattus norvegicus]

Protein Classification

Dynactin_p22 domain-containing protein( domain architecture ID 10538436)

Dynactin_p22 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Dynactin_p22 pfam07426
Dynactin subunit p22; This family contains p22, the smallest subunit of dynactin, a complex ...
 10-170 1.57e-65

Dynactin subunit p22; This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localizes to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis. Family members are approximately 170 residues long.


:

Pssm-ID: 462162 [Multi-domain]  Cd Length: 163  Bit Score: 198.22  E-value: 1.57e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821779   10 LQSRVEELERWVYGPGGTRG--SRKVADGLVKVQVALGNIASKRERVKILYKKIEDLIKYLDPEYIDRIAIPEASKLQFI 87
Cdd:pfam07426   1 LEERIAELEKRVYGEEKNREkdPNSIIDSLLKVQTKLSSAVSKREKIKQLFKKIPELNKYLDPQYEDSIALPDAAKLELI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821779   88 LAEEQFILSQVALLEQVNTLVPMLDSASIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQ 167
Cdd:pfam07426  81 LASEDELRSTAALLEQLQELKPVLDSEHIKDVPELTEKLEKLSQIHLKQQEQANELTEEVKDLLENYNQLVLTLSKQFVQ 160


                  ...
gi 157821779  168 WDE 170
Cdd:pfam07426 161 WDE 163
 
Name Accession Description Interval E-value
Dynactin_p22 pfam07426
Dynactin subunit p22; This family contains p22, the smallest subunit of dynactin, a complex ...
 10-170 1.57e-65

Dynactin subunit p22; This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localizes to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis. Family members are approximately 170 residues long.


Pssm-ID: 462162 [Multi-domain]  Cd Length: 163  Bit Score: 198.22  E-value: 1.57e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821779   10 LQSRVEELERWVYGPGGTRG--SRKVADGLVKVQVALGNIASKRERVKILYKKIEDLIKYLDPEYIDRIAIPEASKLQFI 87
Cdd:pfam07426   1 LEERIAELEKRVYGEEKNREkdPNSIIDSLLKVQTKLSSAVSKREKIKQLFKKIPELNKYLDPQYEDSIALPDAAKLELI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821779   88 LAEEQFILSQVALLEQVNTLVPMLDSASIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQ 167
Cdd:pfam07426  81 LASEDELRSTAALLEQLQELKPVLDSEHIKDVPELTEKLEKLSQIHLKQQEQANELTEEVKDLLENYNQLVLTLSKQFVQ 160


                  ...
gi 157821779  168 WDE 170
Cdd:pfam07426 161 WDE 163
 
Name Accession Description Interval E-value
Dynactin_p22 pfam07426
Dynactin subunit p22; This family contains p22, the smallest subunit of dynactin, a complex ...
 10-170 1.57e-65

Dynactin subunit p22; This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localizes to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis. Family members are approximately 170 residues long.


Pssm-ID: 462162 [Multi-domain]  Cd Length: 163  Bit Score: 198.22  E-value: 1.57e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821779   10 LQSRVEELERWVYGPGGTRG--SRKVADGLVKVQVALGNIASKRERVKILYKKIEDLIKYLDPEYIDRIAIPEASKLQFI 87
Cdd:pfam07426   1 LEERIAELEKRVYGEEKNREkdPNSIIDSLLKVQTKLSSAVSKREKIKQLFKKIPELNKYLDPQYEDSIALPDAAKLELI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821779   88 LAEEQFILSQVALLEQVNTLVPMLDSASIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQ 167
Cdd:pfam07426  81 LASEDELRSTAALLEQLQELKPVLDSEHIKDVPELTEKLEKLSQIHLKQQEQANELTEEVKDLLENYNQLVLTLSKQFVQ 160


                  ...
gi 157821779  168 WDE 170
Cdd:pfam07426 161 WDE 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH