|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
239-1000 |
4.77e-27 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 119.42 E-value: 4.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 239 LLQDGHNVEALRMLALYYLcREGDIEKAAAKLENlgnALDVMEPQNaqlfyKITIAFSRT-CGRNQLilQKVQSFLEKAF 317
Cdd:TIGR02917 49 LQKDPNDAEARFLLGKIYL-ALGDYAAAEKELRK---ALSLGYPKN-----QVLPLLARAyLLQGKF--QQVLDELPGKT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 318 SLT-PQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQQLEffSEFQQSMGRSAE 396
Cdd:TIGR02917 118 LLDdEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALID--EVLTADPGNVDA 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 397 LMYLHAVLATKKNNrqEEVINLLNDVVNTHFSHLEDLplgiqyfeklnpdFLLEVVNEYLNlcpiqpagpgqplspVLRR 476
Cdd:TIGR02917 196 LLLKGDLLLSLGNI--ELALAAYRKAIALRPNNIAVL-------------LALATILIEAG---------------EFEE 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 477 CSSVLETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYn 556
Cdd:TIGR02917 246 AEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY- 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 557 fnVRDYPLYHLIKAQSQKKMGEVAEAIKTLHMAMNLpgmrrsrasskskhrSEVDGSHRLSIFLELVEvhrlNGEQHEAA 636
Cdd:TIGR02917 325 --APNSHQARRLLASIQLRLGRVDEAIATLSPALGL---------------DPDDPAALSLLGEAYLA----LGDFEKAA 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 637 KVLQDAihefsgtcEELRVTIANADLA-----LAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLK-HRKEKMLYITc 710
Cdd:TIGR02917 384 EYLAKA--------TELDPENAAARTQlgiskLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRsGQFDKALAAA- 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 711 yREIAERMP-SPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQNC 789
Cdd:TIGR02917 455 -KKLEKKQPdNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 790 -LCYDLAELLLRLKLYEKAEKVLQHSLAHDPVNELSALmvdgrsqvLLAKVYSKMERPGDAIAALQQARELQAR------ 862
Cdd:TIGR02917 534 rAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL--------ALAQYYLGKGQLKKALAILNEAADAAPDspeawl 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 863 ILKRVQMEQPD---AVPSQRHFAAE------ICAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDL 933
Cdd:TIGR02917 606 MLGRAQLAAGDlnkAVSSFKKLLALqpdsalALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300795419 934 DASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNfMTLSRLIDLLRRCGK 1000
Cdd:TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGN 751
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
313-1048 |
1.37e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 114.80 E-value: 1.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 313 LEKAFSLTPQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLI-RCQLIEGQLQDADQQLEFFSEFQQsm 391
Cdd:TIGR02917 79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDP-- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 392 gRSAELMYLHAVLATKkNNRQEEVINLLNDVVNTHFSHLEDLPLGIQY-FEKLNPDFLLEVVNEYLNLCPIQPAgpgqpl 470
Cdd:TIGR02917 157 -RSLYAKLGLAQLALA-ENRFDEARALIDEVLTADPGNVDALLLKGDLlLSLGNIELALAAYRKAIALRPNNIA------ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 471 sPVLRRCSSVL------------ETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLS 538
Cdd:TIGR02917 229 -VLLALATILIeagefeeaekhaDALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 539 QDKVQLCSQSLELCLSYnfnVRDYPLYHLIKAQSQKKMGEVAEAIKTLHMAMNLpgmrrsrasskskhrSEVDGSHRLSI 618
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKY---APNSHQARRLLASIQLRLGRVDEAIATLSPALGL---------------DPDDPAALSLL 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 619 FLELVEvhrlNGEQHEAAKVLQDAihefsgtcEELRVTIANADLA-----LAQGDTERALSMLRNVTTEQPYFIEAKEKM 693
Cdd:TIGR02917 370 GEAYLA----LGDFEKAAEYLAKA--------TELDPENAAARTQlgiskLSQGDPSEAIADLETAAQLDPELGRADLLL 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 694 ADIYLK-HRKEKMLYITcyREIAERMP-SPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNY 771
Cdd:TIGR02917 438 ILSYLRsGQFDKALAAA--KKLEKKQPdNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 772 SKAITYYEAALKSGQQNC-LCYDLAELLLRLKLYEKAEKVLQHSLAHDPVNELSALmvdgrsqvLLAKVYSKMERPGDAI 850
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNLrAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL--------ALAQYYLGKGQLKKAL 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 851 AALQQARELQAR------ILKRVQMEQPD---AVPSQRHFAAE------ICAEIAKHSAAQRDYEKAITFYREALVHCET 915
Cdd:TIGR02917 588 AILNEAADAAPDspeawlMLGRAQLAAGDlnkAVSSFKKLLALqpdsalALLLLADAYAVMKNYAKAITSLKRALELKPD 667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 916 DSKIMLELAQLYLAQEDLDASLR----------------------------------------------------HCALL 943
Cdd:TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKiakslqkqhpkaalgfelegdlylrqkdypaaiqayrkalkrapssqnaiklHRALL 747
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 944 ---------------LQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRcgklEEVPRFF 1008
Cdd:TIGR02917 748 asgntaeavktleawLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE----LKDPRAL 823
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 300795419 1009 LMAEKHNsrtKLEPG---FQYCKGLHFWYTGEPNDALRHFNKA 1048
Cdd:TIGR02917 824 EYAERAL---KLAPNipaILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
723-1015 |
2.51e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 104.43 E-value: 2.51e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 723 SFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQNclcydlaelllrlk 802
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 803 lyekaekvlqhslahdpvnelsalmvdGRSQVLLAKVYSKMERPGDAIAALQQARELQarilkrvqmeqPDAVPSQRHfa 882
Cdd:COG2956 76 ---------------------------AEALLELAQDYLKAGLLDRAEELLEKLLELD-----------PDDAEALRL-- 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 883 aeicaeIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMF 962
Cdd:COG2956 116 ------LAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 300795419 963 RKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEVPRFFLMAEKHN 1015
Cdd:COG2956 190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
191-788 |
1.24e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 108.63 E-value: 1.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 191 RQNYSGALETVSQIIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAAAKL 270
Cdd:TIGR02917 274 KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL-RLGRVDEAIATL 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 271 enlgNALDVMEPQNAQLFykiTIAFSRTCGRNQliLQKVQSFLEKAFSLTPQQAEIATELGYQMILQGKVKEAWKWYRTA 350
Cdd:TIGR02917 353 ----SPALGLDPDDPAAL---SLLGEAYLALGD--FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 351 MTLNESNISAVTGLIRCQLiegQLQDADQQLEFFSEFQQSMGRSAELMYLHAVLATKKNnrqeevinllndvvnthfshl 430
Cdd:TIGR02917 424 AQLDPELGRADLLLILSYL---RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG--------------------- 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 431 eDLPLGIQYFEK---LNPDFLLEVVneylNLCPIQpAGPGQPLSPVLRrcssvLETIIRSVPGLPQAVFLMAKVKYLSGD 507
Cdd:TIGR02917 480 -DLAKAREAFEKalsIEPDFFPAAA----NLARID-IQEGNPDDAIQR-----FEKVLTIDPKNLRAILALAGLYLRTGN 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 508 TEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQlcsQSLELCLSYNFNVRDYPLYHLIKAQSQKKMGEVAEAIKTLh 587
Cdd:TIGR02917 549 EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK---KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF- 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 588 mamnlpgmrrsrassksKHRSEVDGSHRLsIFLELVEVHRLNGEQHEAAKVLQDAIHEFSGTceeLRVTIANADLALAQG 667
Cdd:TIGR02917 625 -----------------KKLLALQPDSAL-ALLLLADAYAVMKNYAKAITSLKRALELKPDN---TEAQIGLAQLLLAAK 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 668 DTERALSMLRNVTTEQPYFIEAKEKMADIYLKhRKEKMLYITCYREIAERMPSPRSFLLLGDAYMNIQEPEEAIVAYEQA 747
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLR-QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW 762
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 300795419 748 LNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQN 788
Cdd:TIGR02917 763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
492-1302 |
1.39e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 108.25 E-value: 1.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 492 PQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNFNVRDYPLYhLIKAQ 571
Cdd:TIGR02917 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL-LARAY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 572 SqkKMGEVAEAIKTLHMAMNLPgmrrsrasskSKHRSEVdgshrlsifLELVEVHRLNGEQHEAAKVLQDAIHEFSGTce 651
Cdd:TIGR02917 101 L--LQGKFQQVLDELPGKTLLD----------DEGAAEL---------LALRGLAYLGLGQLELAQKSYEQALAIDPR-- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 652 ELRVTIANADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADiYLKHRKEKMLYITCYREIAERMP-SPRSFLLLGDA 730
Cdd:TIGR02917 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD-LLLSLGNIELALAAYRKAIALRPnNIAVLLALATI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 731 YMNIQEPEEAIVAYEQALNQNPKDgTLARKIgKALV--KTHNYSKAITYYEAALKSGQQN-CLCYDLAELLLRLKLYEKA 807
Cdd:TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNS-PLAHYL-KALVdfQKKNYEDARETLQDALKSAPEYlPALLLAGASEYQLGNLEQA 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 808 EKVLQHSLAHDPVNELSALMvdgrsqvlLAKVYSKMERPGDAIAALQQARELQAR------ILKRVQMEQPDAVPSQRHF 881
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRL--------LASIQLRLGRVDEAIATLSPALGLDPDdpaalsLLGEAYLALGDFEKAAEYL 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 882 --AAEICAEIAKHSA-------AQRDYEKAITFYREALvhcETDSKIM---LELAQLYLAQEDLDASLRhCALLLQRDQD 949
Cdd:TIGR02917 387 akATELDPENAAARTqlgisklSQGDPSEAIADLETAA---QLDPELGradLLLILSYLRSGQFDKALA-AAKKLEKKQP 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 950 NEPATM-LMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEVPRFF---LMAEKHNSRTKLEPGFQ 1025
Cdd:TIGR02917 463 DNASLHnLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFekvLTIDPKNLRAILALAGL 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1026 YCKglhfwyTGEPNDALRHFNKARKdsdwgqnalynmieicLNPDNetiggevfENLNGDLGTSPEKQESVQLAVRTAEK 1105
Cdd:TIGR02917 543 YLR------TGNEEEAVAWLEKAAE----------------LNPQE--------IEPALALAQYYLGKGQLKKALAILNE 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1106 LLKeLKPQTVQ-----GRLQLrimencclmatkQKSSVEQALNTFTEIAASEKDHIPALLGMATAYMILKQTPKARNQLK 1180
Cdd:TIGR02917 593 AAD-AAPDSPEawlmlGRAQL------------AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1181 RiaKMTWNPieaeELEKSWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAWKHS 1260
Cdd:TIGR02917 660 R--ALELKP----DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 300795419 1261 NQTNPAVgyKLAFNYLKAKRYVDAIDVCHQVLEAHPTYPKIR 1302
Cdd:TIGR02917 734 PSSQNAI--KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
660-947 |
5.40e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.49 E-value: 5.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 660 ADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLKhRKEKMLYITCYREIAERMP-SPRSFLLLGDAYMNIQEPE 738
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPdRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 739 EAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQNCLCYDLA-ELLLRLKLYEKAEKVLQHSLAH 817
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 818 DPVNElsalmvdgRSQVLLAKVYSKMERPGDAIAALQQARELqarilkrvqmeQPDAVPsqrhfAAEICAEIAkhsAAQR 897
Cdd:COG2956 174 DPDCA--------RALLLLAELYLEQGDYEEAIAALERALEQ-----------DPDYLP-----ALPRLAELY---EKLG 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 300795419 898 DYEKAITFYREALVHCETDSKImLELAQLYLAQEDLDASLRHCALLLQRD 947
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
503-783 |
2.44e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.71 E-value: 2.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 503 YLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfnvRDYPLYHLIKAQSQKKMGEVAEA 582
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 583 IKTLHMAMNLPgmrrsrasskskhrsevdgSHRLSIFLELVEVHRLNGEQHEAAKVLQDAIHEfSGTCEELRVTIanADL 662
Cdd:COG2956 96 EELLEKLLELD-------------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-GPENAHAYCEL--AEL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 663 ALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLKHRKEKMLyITCYREIAERMP-SPRSFLLLGDAYMNIQEPEEAI 741
Cdd:COG2956 154 YLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA-IAALERALEQDPdYLPALPRLAELYEKLGDPEEAL 232
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 300795419 742 VAYEQALNQNPKDgTLARKIGKALVKTHNYSKAITYYEAALK 783
Cdd:COG2956 233 ELLRKALELDPSD-DLLLALADLLERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
109-783 |
4.37e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 90.53 E-value: 4.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 109 KALYHAGLFLWHIGRHDKAREYIDRMSKMPHDSNEGPILKAWLDITRGKepYAKkALRYFEEGLQDGNDIF-ALLGKVLC 187
Cdd:TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN--YED-ARETLQDALKSAPEYLpALLLAGAS 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 188 LEMRQNYSGALETVSQIIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAA 267
Cdd:TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL-ALGDFEKAA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 268 AKLENLGNaldvMEPQNAQLFYKITIAFSRT-------------------CGRNQLIL----------QKVQSFLEKAFS 318
Cdd:TIGR02917 384 EYLAKATE----LDPENAAARTQLGISKLSQgdpseaiadletaaqldpeLGRADLLLilsylrsgqfDKALAAAKKLEK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 319 LTPQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQqleffsEFQQSMGRSAELM 398
Cdd:TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ------RFEKVLTIDPKNL 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 399 YLHAVLA--TKKNNRQEEVINLLNDVVNTHFSHLEDLPLGIQYFEKLN-PDFLLEVVNEYLNLCPIQPagpgqplspvlr 475
Cdd:TIGR02917 534 RAILALAglYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGqLKKALAILNEAADAAPDSP------------ 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 476 rcssvletiirsvpglpQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSY 555
Cdd:TIGR02917 602 -----------------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 556 NFNVRD------------------YPLYHLIKAQSQKK-MGEVAEAikTLHMAMNlpgmRRSRASSKSKHRSEVDGSHrl 616
Cdd:TIGR02917 665 KPDNTEaqiglaqlllaakrtesaKKIAKSLQKQHPKAaLGFELEG--DLYLRQK----DYPAAIQAYRKALKRAPSS-- 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 617 SIFLELVEVHRLNGEQHEAAKVLQDAIHEFSgtcEELRVTIANADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADI 696
Cdd:TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHP---NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 697 YLKHRKEKMLyitcyrEIAERM-----PSPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNY 771
Cdd:TIGR02917 814 YLELKDPRAL------EYAERAlklapNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887
|
730
....*....|..
gi 300795419 772 SKAITYYEAALK 783
Cdd:TIGR02917 888 AEARKELDKLLN 899
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
835-1003 |
4.93e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 83.50 E-value: 4.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 835 LLAKVYSKMERPGDAIAALQQARELQARILKRVQMEQPDAVPSQRHFAAEICAEIAKHSAAQRDYEKAITFYREALVHCE 914
Cdd:COG3914 30 AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 915 TDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDL 994
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
|
....*....
gi 300795419 995 LRRCGKLEE 1003
Cdd:COG3914 190 LQDLGRLEE 198
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
480-751 |
7.04e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.39 E-value: 7.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 480 VLETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNFNV 559
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 560 RDYpLYHLIKAQSQKKmgEVAEAIKTLHMAMNLpgmrrsraSSKSKHrsevdgshrlsIFLELVEVHRLNGEQHEAAKVL 639
Cdd:COG2956 110 AEA-LRLLAEIYEQEG--DWEKAIEVLERLLKL--------GPENAH-----------AYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 640 QDAIhEFSGTCEELRVTIanADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLKHRKEKmLYITCYREIAERMP 719
Cdd:COG2956 168 EKAL-KLDPDCARALLLL--AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE-EALELLRKALELDP 243
|
250 260 270
....*....|....*....|....*....|..
gi 300795419 720 SPRSFLLLGDAYMNIQEPEEAIVAYEQALNQN 751
Cdd:COG2956 244 SDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
921-1244 |
5.20e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.69 E-value: 5.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 921 LELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLidllrrcgk 1000
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL--------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1001 leevprfflmaekhnsrtklepgfqyckGLHFWYTGEPNDALRHFNKARKDSDWGQNALYNMIEIClnpdnetiggevfe 1080
Cdd:COG2956 83 ----------------------------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1081 nlngdlgtspEKQESVQLAVRTAEKLLKeLKPQTVQGRLQLRimencclMATKQKSSVEQALNTFTEIAASEKDHIPALL 1160
Cdd:COG2956 121 ----------EQEGDWEKAIEVLERLLK-LGPENAHAYCELA-------ELYLEQGDYDEAIEALEKALKLDPDCARALL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1161 GMATAYMILKQTPKARNQLKRIAKMTWNPIEAeeleksWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIM 1240
Cdd:COG2956 183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
|
....
gi 300795419 1241 EKEQ 1244
Cdd:COG2956 257 RKEG 260
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
719-1297 |
3.50e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.82 E-value: 3.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 719 PSPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGqqnclcydlaell 798
Cdd:TIGR02917 20 QSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG------------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 799 lrlklYEKAEKVLqhslahdpvnelsalmvdgrsqvLLAKVYSKMERPGDAIAalqqarelqarilkrvQMEQPDAVPSQ 878
Cdd:TIGR02917 87 -----YPKNQVLP-----------------------LLARAYLLQGKFQQVLD----------------ELPGKTLLDDE 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 879 RhfAAEICAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMA 958
Cdd:TIGR02917 123 G--AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 959 DLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEvprfflmAEKH----NSRTKLEPGFQYCKGLHFWY 1034
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE-------AEKHadalLKKAPNSPLAHYLKALVDFQ 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1035 TGEPNDALRHFNKARKdsdwgqnalynmieicLNPdnetiggevfENLNGDL--GTSPEKQESVQLAVRTAEKLLKELkP 1112
Cdd:TIGR02917 274 KKNYEDARETLQDALK----------------SAP----------EYLPALLlaGASEYQLGNLEQAYQYLNQILKYA-P 326
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1113 QTVQGRLqlrimenccLMATKQKSS--VEQALNTFTEIAASEKDHiPALLGMA-TAYMILKQTPKARNQLKRIAK----- 1184
Cdd:TIGR02917 327 NSHQARR---------LLASIQLRLgrVDEAIATLSPALGLDPDD-PAALSLLgEAYLALGDFEKAAEYLAKATEldpen 396
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1185 ------------MTWNPIEAEE-LEK----------SWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIME 1241
Cdd:TIGR02917 397 aaartqlgisklSQGDPSEAIAdLETaaqldpelgrADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 300795419 1242 KEQAYTDAAFNYEMAWKhSNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPT 1297
Cdd:TIGR02917 477 GKGDLAKAREAFEKALS-IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
178-457 |
3.56e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 3.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 178 IFALLG---KVLCLEMRQNYSGALETVSQIIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLAL 254
Cdd:COG2956 5 VAAALGwyfKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 255 YYLcREGDIEKAAAKLENLgnaLDvMEPQNAQLFYKITIAFSRTcgRNqliLQKVQSFLEKAFSLTPQQAEIATELGYQM 334
Cdd:COG2956 85 DYL-KAGLLDRAEELLEKL---LE-LDPDDAEALRLLAEIYEQE--GD---WEKAIEVLERLLKLGPENAHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 335 ILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQQLEffSEFQQSMGRSAELMYLHAVLAtkKNNRQEE 414
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE--RALEQDPDYLPALPRLAELYE--KLGDPEE 230
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 300795419 415 VINLLNDVVNTHFSHLEDLPLGIQYFEKLNPDFLLEVVNEYLN 457
Cdd:COG2956 231 ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
651-783 |
3.52e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.21 E-value: 3.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 651 EELRVTIANADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLkHRKEKMLYITCYREIAERMP-SPRSFLLLGD 729
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILL-QLGDLDEAIVLLHEALELDPdEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 300795419 730 AYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALK 783
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
730-977 |
3.95e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.79 E-value: 3.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 730 AYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALvkthNYSKAITYYEAALKSGQQNCLCYDLAELLLRLKLYEKAEK 809
Cdd:COG3914 24 AELALAAELEAAALAAALGLALLLLAALAEAAAAAL----LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 810 VLQHSLAHDPvNELSALmvdgrsqVLLAKVYSKMERPGDAIAALQQARELqarilkrvqmeQPDavpsqrhfAAEICAEI 889
Cdd:COG3914 100 LYRRALALNP-DNAEAL-------FNLGNLLLALGRLEEALAALRRALAL-----------NPD--------FAEAYLNL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 890 AKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQ 969
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
....*...
gi 300795419 970 AVFHLQQL 977
Cdd:COG3914 233 YDRFEELL 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1086-1296 |
5.18e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 5.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1086 LGTSPEKQESVQLAVRTAEKLLkELKPQTVQGRLQL-RImenccLMATKQkssVEQALNTFTEIAASEKDHIPALLGMAT 1164
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLL-ERDPDRAEALLELaQD-----YLKAGL---LDRAEELLEKLLELDPDDAEALRLLAE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1165 AYMILKQTPKARNQLKRIAKMtwNPIEAEelekSWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIMEKEQ 1244
Cdd:COG2956 119 IYEQEGDWEKAIEVLERLLKL--GPENAH----AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 300795419 1245 AYTDAAFNYEMAWKHsNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHP 1296
Cdd:COG2956 193 DYEEAIAALERALEQ-DPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
882-1003 |
1.19e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 882 AAEICAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLM 961
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 300795419 962 FRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEE 1003
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
883-984 |
1.36e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.10 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 883 AEICAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMF 962
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|..
gi 300795419 963 RKQDYEQAVFHLQQLLERKPDN 984
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPAD 118
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
836-1003 |
4.74e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.64 E-value: 4.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 836 LAKVYSKMERPGDAIAALQQARELQARIlkrvqmeqpdavpsqrhfaAEICAEIAKHSAAQRDYEKAITFYREALVHCET 915
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDD-------------------AEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 916 DSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLL 995
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
....*...
gi 300795419 996 RRCGKLEE 1003
Cdd:COG0457 155 EKLGRYEE 162
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
660-866 |
6.33e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 6.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 660 ADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLK-HRKEKMlyITCYREIAERMP-SPRSFLLLGDAYMNIQEP 737
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRlGRYEEA--LADYEQALELDPdDAEALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 738 EEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQNCLCYDLA-ELLLRLKLYEKAEKVLQHSLA 816
Cdd:COG0457 93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLgIALEKLGRYEEALELLEKLEA 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 300795419 817 HDPVNELSALMVDGRSQVLLAKVYSKMERPGDAIAALQQARELQARILKR 866
Cdd:COG0457 173 AALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
721-979 |
7.84e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.87 E-value: 7.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 721 PRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQNCLCYDLA-ELLL 799
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLgLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 800 RLKLYEKAEKVLQHSLAHDPvnelsalmVDGRSQVLLAKVYSKMERPGDAIAALQQARELqarilkrvqmeQPDAVPSQR 879
Cdd:COG0457 88 ALGRYEEALEDYDKALELDP--------DDAEALYNLGLALLELGRYDEAIEAYERALEL-----------DPDDADALY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 880 HFaAEICAEIAKHSAAQRDYEKAITFYREALVhcETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMAD 959
Cdd:COG0457 149 NL-GIALEKLGRYEEALELLEKLEAAALAALL--AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
|
250 260
....*....|....*....|
gi 300795419 960 LMFRKQDYEQAVFHLQQLLE 979
Cdd:COG0457 226 ALALLLALRLAALALYQYRA 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
848-1090 |
3.68e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 3.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 848 DAIAALQQARELQARILKRVQMEQPDAVPSQRHFAAEICAEIAKHSAAQR---DYEKAITFYREALVHCETDSKIMLELA 924
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAaaaLLALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 925 QLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEV 1004
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1005 PRFFLMAekhnsrTKLEPGFQYckgLHFW------YTGEPNDALRHFNKARK----DSDWGQNALYNMIEICLNPDNETI 1074
Cdd:COG3914 166 IAALRRA------LELDPDNAE---ALNNlgnalqDLGRLEEAIAAYRRALEldpdNADAHSNLLFALRQACDWEVYDRF 236
|
250
....*....|....*.
gi 300795419 1075 GGEVFENLNGDLGTSP 1090
Cdd:COG3914 237 EELLAALARGPSELSP 252
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
920-1050 |
1.07e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 920 MLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCG 999
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 300795419 1000 KLEEVPRFFLMAEKHNSRtklEPGFQYCKGLHFWYTGEPNDALRHFNKARK 1050
Cdd:COG4783 87 DYDEALALLEKALKLDPE---HPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1138-1315 |
1.61e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1138 VEQALNTFTEIAASEKDHIPALLGMATAYMILKQTPKARNQLKRIAKmtwnpiEAEELEKSWLLLADIYIQSAKYDMAEE 1217
Cdd:COG2956 58 YDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLE------LDPDDAEALRLLAEIYEQEGDWEKAIE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1218 LLKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAWKHsNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPT 1297
Cdd:COG2956 132 VLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL-DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
|
170
....*....|....*...
gi 300795419 1298 YPKIRKDILDKARASLRP 1315
Cdd:COG2956 211 YLPALPRLAELYEKLGDP 228
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
621-752 |
4.08e-09 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 60.21 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 621 ELVEVHRLNGEQHEAAKVLQDAIhEFSGTCeeLRVTIANADLALAQGDTERALSMLRNVTTEQP-YFIEAKEKMADIYLK 699
Cdd:PRK11788 185 ELAQQALARGDLDAARALLKKAL-AADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPeYLSEVLPKLMECYQA 261
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 300795419 700 HRKEKMlYITCYREIAERMPSPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNP 752
Cdd:PRK11788 262 LGDEAE-GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
725-862 |
5.31e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 5.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 725 LLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQNCLCYDLA-ELLLRLKL 803
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLgLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 300795419 804 YEKAEKVLQHSLAHDPvnelsalmVDGRSQVLLAKVYSKMERPGDAIAALQQARELQAR 862
Cdd:COG4783 88 YDEALALLEKALKLDP--------EHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
708-859 |
5.86e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.78 E-value: 5.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 708 ITCYREIAERMP-SPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAAlksgq 786
Cdd:COG4235 3 IARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA----- 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 300795419 787 qnclcydlaelllrlklyekaekvlqhsLAHDPvNELSALMvdgrsqvLLAKVYSKMERPGDAIAALQQAREL 859
Cdd:COG4235 78 ----------------------------LALDP-DNPEALY-------LLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
658-896 |
5.87e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 5.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 658 ANADLALAQGDTERALSMLRNVTTE---QPYFIEAKEKMADIYLKHRKEKMLYITCYREIAERMP-SPRSFLLLGDAYMN 733
Cdd:COG3914 45 LLLLAALAEAAAAALLALAAGEAAAaaaALLLLAALLELAALLLQALGRYEEALALYRRALALNPdNAEALFNLGNLLLA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 734 IQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALK------SGQQN-CLCYdlaellLRLKLYEK 806
Cdd:COG3914 125 LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEldpdnaEALNNlGNAL------QDLGRLEE 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 807 AEKVLQHSLAHDPVN-ELSALMVDGRSQVLLAKVYSKMERpgdAIAALQQARELQArilkrvqmeqPDAVPSQRHFAAEI 885
Cdd:COG3914 199 AIAAYRRALELDPDNaDAHSNLLFALRQACDWEVYDRFEE---LLAALARGPSELS----------PFALLYLPDDDPAE 265
|
250
....*....|.
gi 300795419 886 CAEIAKHSAAQ 896
Cdd:COG3914 266 LLALARAWAQL 276
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
804-997 |
7.89e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.09 E-value: 7.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 804 YEKAEKVLQHSLAHDPvNELSALmvdgrsqVLLAKVYSKMERPGDAIAALQQARELQARilkrvqmeqpdavpsqrhfAA 883
Cdd:COG0457 24 YEEAIEDYEKALELDP-DDAEAL-------YNLGLAYLRLGRYEEALADYEQALELDPD-------------------DA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 884 EICAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFR 963
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
170 180 190
....*....|....*....|....*....|....
gi 300795419 964 KQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRR 997
Cdd:COG0457 157 LGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
831-984 |
8.05e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 8.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 831 RSQVLLAKVYSKMERPGDAIAALQQARELQarilkrvqmeqPDAvpsqrhfaAEICAEIAKHSAAQRDYEKAITFYREAL 910
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELD-----------PDN--------PEAFALLGEILLQLGDLDEAIVLLHEAL 65
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300795419 911 VHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDN 984
Cdd:COG4783 66 ELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
711-819 |
8.44e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 8.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 711 YREIAERMP-SPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQN- 788
Cdd:COG4783 27 LEKALELDPdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHp 106
|
90 100 110
....*....|....*....|....*....|.
gi 300795419 789 CLCYDLAELLLRLKLYEKAEKVLQHSLAHDP 819
Cdd:COG4783 107 EAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
624-856 |
1.07e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.32 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 624 EVHRLNGEQHEAAKVLQDAIHEFSGTCEELRvtiANADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLK-HRK 702
Cdd:COG0457 16 LAYRRLGRYEEAIEDYEKALELDPDDAEALY---NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAlGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 703 EKMlyITCYREIAERMPS-PRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAA 781
Cdd:COG0457 93 EEA--LEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 300795419 782 LKSGQQNCLCYDLAELLLRLKLYEKAEKVLQHSLAHDPVNELSALMVDGRSQVLLAKVYSKMERPGDAIAALQQA 856
Cdd:COG0457 171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
897-1003 |
2.60e-08 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 57.51 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 897 RDYEKAITfYREALVHCETDS-KIML-----ELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQA 970
Cdd:PRK11788 155 KDWQKAID-VAERLEKLGGDSlRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA 233
|
90 100 110
....*....|....*....|....*....|....
gi 300795419 971 VFHLQQLLERKPDNF-MTLSRLIDLLRRCGKLEE 1003
Cdd:PRK11788 234 IEALERVEEQDPEYLsEVLPKLMECYQALGDEAE 267
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
805-1060 |
3.06e-08 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 58.56 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 805 EKAEKVLQHSLAHDPvNELSALMVdgrsqvlLAKVYSkmeRPGD---AIAALQQARELQARILKRVQMEqpDAVPSQRHF 881
Cdd:PRK11447 286 GKAIPELQQAVRANP-KDSEALGA-------LGQAYS---QQGDrarAVAQFEKALALDPHSSNRDKWE--SLLKVNRYW 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 882 AAeicaeIAKHSAA--QRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMAD 959
Cdd:PRK11447 353 LL-----IQQGDAAlkANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 960 LmFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLR---RCGKLEEVPRFFLMAEKHNSRTKLEPG-----FQYCKGLh 1031
Cdd:PRK11447 428 L-YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRlaqQAEALENQGKWAQAAELQRQRLALDPGsvwltYRLAQDL- 505
|
250 260 270
....*....|....*....|....*....|....
gi 300795419 1032 fWYTGEPNDALRHFNK--ARKDSDWGQ---NALY 1060
Cdd:PRK11447 506 -RQAGQRSQADALMRRlaQQKPNDPEQvyaYGLY 538
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
901-1003 |
3.21e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.47 E-value: 3.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 901 KAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLER 980
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|...
gi 300795419 981 KPDNFMTLSRLIDLLRRCGKLEE 1003
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAE 103
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
48-418 |
7.63e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 7.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 48 LMEGKAQEALREFEAI--KNKQDVSLCSLMALMYVHKMSPNpdrEAILELDtKMKEQRKEAGRKALYHAGLFLwHIGRHD 125
Cdd:TIGR02917 340 LRLGRVDEAIATLSPAlgLDPDDPAALSLLGEAYLALGDFE---KAAEYLA-KATELDPENAAARTQLGISKL-SQGDPS 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 126 KAREYIDRMSKMPHDSNEGPILKAWLDITRGKEPYAKKALRYFEEGLQDGNDIFALLGKVLCLEmrQNYSGALETVSQII 205
Cdd:TIGR02917 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK--GDLAKAREAFEKAL 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 206 VNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAAAKLE-------------- 271
Cdd:TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL-RTGNEEEAVAWLEkaaelnpqeiepal 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 272 ----------NLGNALDVMepQNAQLFYKITIAFSRTCGRNQLILQKVQSFLE---KAFSLTPQQAEIATELGYQMILQG 338
Cdd:TIGR02917 572 alaqyylgkgQLKKALAIL--NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSsfkKLLALQPDSALALLLLADAYAVMK 649
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 339 KVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDAdqqLEFFSEFQQSMGRSAELMYLHAVLATKKNNRQEEVINL 418
Cdd:TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA---KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
831-982 |
8.69e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 8.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 831 RSQVLLAKVYSKMERPGDAIAALQQARELQARILKRVQMEQPDAVPSQRHFAAEICAEIAKHSAAQRDYEKAITFYREAL 910
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 300795419 911 VHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKP 982
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1139-1295 |
1.91e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.86 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1139 EQALNTFTEIAASEKDHIPALLGMATAYMILKQTPKARNQLKRIAKMtwNPIEAEelekSWLLLADIYIQSAKYDMAEEL 1218
Cdd:COG0457 25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL--DPDDAE----ALNNLGLALQALGRYEEALED 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300795419 1219 LKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAWKHsNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAH 1295
Cdd:COG0457 99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1157-1298 |
1.91e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1157 PALLGMATAYMILKQTPKARNQLKRIAKMTWNPIEAeeleksWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYM 1236
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEA------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 300795419 1237 GYIMEKEQAYTDAAFNYEMAWKHsNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTY 1298
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
481-592 |
1.99e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.38 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 481 LETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfnvR 560
Cdd:COG3914 101 YRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD---P 177
|
90 100 110
....*....|....*....|....*....|..
gi 300795419 561 DYPLYHLIKAQSQKKMGEVAEAIKTLHMAMNL 592
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
48-273 |
3.45e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.19 E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 48 LMEGKAQEALREFEAI--KNKQDVSLcsLMALMYVHKMSPNPDR-EAILELDTKMKEQRKEAgrkaLYHAGLFLWHIGRH 124
Cdd:COG2956 19 LLNGQPDKAIDLLEEAleLDPETVEA--HLALGNLYRRRGEYDRaIRIHQKLLERDPDRAEA----LLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 125 DKAREYIDRMSKMPHDSNEgpILKAWLDITRGKEPYAKkALRYFEEGLQ-DGNDIFALLGKVLCLEMRQNYSGALETVSQ 203
Cdd:COG2956 93 DRAEELLEKLLELDPDDAE--ALRLLAEIYEQEGDWEK-AIEVLERLLKlGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 204 IIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAAAKLENL 273
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE-KLGDPEEALELLRKA 238
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
615-754 |
4.22e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.58 E-value: 4.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 615 RLSIFLELVEVHRLNGEQHEAAKVLQDAIHEFSgtcEELRVTIANADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMA 694
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 300795419 695 DIYLKHRKEKmLYITCYREIAERMP-SPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKD 754
Cdd:COG4783 80 LALLKAGDYD-EALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
895-983 |
4.48e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.01 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 895 AQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRhCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHL 974
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 300795419 975 QQLLERKPD 983
Cdd:COG3063 83 ERALELDPS 91
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
883-1049 |
1.24e-06 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 50.45 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 883 AEICAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMF 962
Cdd:NF040959 37 AKMYRNKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 963 RKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEVPRFFLMAekhnsrTKLEPGF-QYCKGLHFWYT--GEPN 1039
Cdd:NF040959 117 KIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKA------LELDPNEiKYHQAIGFMYVqkGDHE 190
|
170
....*....|
gi 300795419 1040 DALRHFNKAR 1049
Cdd:NF040959 191 TAAEHFKKAM 200
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
479-677 |
1.42e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.27 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 479 SVLETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfn 558
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD-- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 559 vRDYPLYHLIKAQSQKKMGEVAEAIKTLHMAMNLpgmrrsrasskskhrsevdGSHRLSIFLELVEVHRLNGEQHEAAKV 638
Cdd:COG2956 175 -PDCARALLLLAELYLEQGDYEEAIAALERALEQ-------------------DPDYLPALPRLAELYEKLGDPEEALEL 234
|
170 180 190
....*....|....*....|....*....|....*....
gi 300795419 639 LQDAIHEFSGTCEELRVtianADLALAQGDTERALSMLR 677
Cdd:COG2956 235 LRKALELDPSDDLLLAL----ADLLERKEGLEAALALLE 269
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
221-382 |
2.15e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 221 LQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAaakLENLGNALDvMEPQNAQLFYKITIAFSRTcG 300
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYL-RLGRYEEA---LADYEQALE-LDPDDAEALNNLGLALQAL-G 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 301 RNQLILQkvqsFLEKAFSLTPQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQQ 380
Cdd:COG0457 91 RYEEALE----DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166
|
..
gi 300795419 381 LE 382
Cdd:COG0457 167 LE 168
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
708-783 |
3.80e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.91 E-value: 3.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 708 ITCYREIAERMPS----PRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLAR---KIGKALVKTHNYSKAITYYEA 780
Cdd:COG1729 13 IAAFKAFLKRYPNsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLEE 92
|
...
gi 300795419 781 ALK 783
Cdd:COG1729 93 LIK 95
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
174-350 |
7.10e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.85 E-value: 7.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 174 DGNDIFALLGKVLCLEMRQNYSGALETVSQIIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLA 253
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 254 LYYLcREGDIEKAAAKLEnlgNALDvMEPQNAQLFYKITIAFSRTcGRnqliLQKVQSFLEKAFSLTPQQAEIATELGYQ 333
Cdd:COG0457 84 LALQ-ALGRYEEALEDYD---KALE-LDPDDAEALYNLGLALLEL-GR----YDEAIEAYERALELDPDDADALYNLGIA 153
|
170
....*....|....*..
gi 300795419 334 MILQGKVKEAWKWYRTA 350
Cdd:COG0457 154 LEKLGRYEEALELLEKL 170
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
481-592 |
1.02e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 481 LETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfnvR 560
Cdd:COG4783 27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLD---P 103
|
90 100 110
....*....|....*....|....*....|..
gi 300795419 561 DYPLYHLIKAQSQKKMGEVAEAIKTLHMAMNL 592
Cdd:COG4783 104 EHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
806-956 |
1.10e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 806 KAEKVLQHSLAHDPVnelsalmvDGRSQVLLAKVYSKMERPGDAIAALQQARELQarilkrvqmeqPDAvpsqrhfaAEI 885
Cdd:COG4235 1 EAIARLRQALAANPN--------DAEGWLLLGRAYLRLGRYDEALAAYEKALRLD-----------PDN--------ADA 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 300795419 886 CAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATML 956
Cdd:COG4235 54 LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
51-273 |
1.16e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.57 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 51 GKAQEALREFEAI--KNKQDVSLCSLMALMYVHKMspNPDR-EAILELDTKMKEQRKEAgrkaLYHAGLFLWHIGRHDKA 127
Cdd:COG2956 56 GEYDRAIRIHQKLleRDPDRAEALLELAQDYLKAG--LLDRaEELLEKLLELDPDDAEA----LRLLAEIYEQEGDWEKA 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 128 REYIDRMSKMPHDSNEGPILKAWLDITRGKepyAKKALRYFEEGLQ-DGNDIFALLGKVLCLEMRQNYSGALETVSQIIV 206
Cdd:COG2956 130 IEVLERLLKLGPENAHAYCELAELYLEQGD---YDEAIEALEKALKlDPDCARALLLLAELYLEQGDYEEAIAALERALE 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300795419 207 NFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDgHNVEALRMLALYYLcREGDIEKAAAKLENL 273
Cdd:COG2956 207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALADLLE-RKEGLEAALALLERQ 271
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
660-754 |
1.80e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 660 ADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLK-HRKEKMlyITCYREIAERMPS-PRSFLLLGDAYMNIQEP 737
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAaGDTEEA--EELLERALALDPDnPEALYLLGLAAFQQGDY 101
|
90
....*....|....*..
gi 300795419 738 EEAIVAYEQALNQNPKD 754
Cdd:COG4235 102 AEAIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
180-323 |
2.01e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 180 ALLGKVLCLEMRQNYSGALETVSQIIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcR 259
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL-K 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300795419 260 EGDIEKAAAKLEnlgNALDvMEPQNAQLFYKITIAFSRTcGRnqliLQKVQSFLEKAFSLTPQQ 323
Cdd:COG4783 85 AGDYDEALALLE---KALK-LDPEHPEAYLRLARAYRAL-GR----PDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
635-784 |
2.83e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 635 AAKVLQDAIHEFSGTCEELRVTIANADLALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLKHRKEKMLYITCYREI 714
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 300795419 715 AERMP-SPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKS 784
Cdd:COG5010 81 LQLDPnNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
711-820 |
3.20e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 711 YREIAERMPSPRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKSGQQNC- 789
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPn 123
|
90 100 110
....*....|....*....|....*....|.
gi 300795419 790 LCYDLAELLLRLKLYEKAEKVLQHSLAHDPV 820
Cdd:COG5010 124 AYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
246-382 |
3.37e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 246 VEALRMLALYYLcREGDIEKAAAKLENLGNAldvmEPQNAQLFYKITIAFSRTcGRnqliLQKVQSFLEKAFSLTPQQAE 325
Cdd:COG4783 4 AEALYALAQALL-LAGDYDEAEALLEKALEL----DPDNPEAFALLGEILLQL-GD----LDEAIVLLHEALELDPDEPE 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 300795419 326 IATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQQLE 382
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1199-1305 |
3.78e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 3.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1199 WLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAWKHsNQTNPAVGYKLAFNYLKA 1278
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 300795419 1279 KRYVDAIDVCHQVLEAHPTYPKIRKDI 1305
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
730-819 |
4.57e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 730 AYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITyYEAALKSGQQNCLCYDLA-ELLLRLKLYEKAE 808
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLaELLLELGDYDEAL 79
|
90
....*....|.
gi 300795419 809 KVLQHSLAHDP 819
Cdd:COG3063 80 AYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1139-1223 |
4.80e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1139 EQALNTFTEIAASEKDHIPALLGMATAYMILKQTPKARNQLKRIAKMtwNPIEAEelekSWLLLADIYIQSAKYDMAEEL 1218
Cdd:COG4235 34 DEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL--DPDNPE----ALYLLGLAAFQQGDYAEAIAA 107
|
....*
gi 300795419 1219 LKRCL 1223
Cdd:COG4235 108 WQKLL 112
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
876-1128 |
5.44e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.68 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 876 PSQRHFAAEICAEIAKHSAAQRDYEKAITFYREA---LVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEP 952
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAaalAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 953 ATMLMADLMfRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEvprfflmAEKHNSR-TKLEPGF---QYCK 1028
Cdd:COG3914 81 LELAALLLQ-ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-------ALAALRRaLALNPDFaeaYLNL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1029 GLHFWYTGEPNDALRHFNKArkdsdwgqnalynmieICLNPDNETIggevfenLNGdLGTSPEKQESVQLAVRTAEKLLk 1108
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRA----------------LELDPDNAEA-------LNN-LGNALQDLGRLEEAIAAYRRAL- 207
|
250 260
....*....|....*....|.
gi 300795419 1109 ELKPQTVQGR-LQLRIMENCC 1128
Cdd:COG3914 208 ELDPDNADAHsNLLFALRQAC 228
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
220-405 |
8.39e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.44 E-value: 8.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 220 KLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAAAKLENLGNALDVMEPQNAQLFYKITIAFSRTC 299
Cdd:COG3071 93 ELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYR-QLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 300 GRNQLILQKVQSFLEKAFSltpQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNisavtGLIRcQLIEGQLQDADQ 379
Cdd:COG3071 172 ARDAEALKALWKALPRAER---RDPELAAAYARALIALGDHDEAERLLREALKRQWDP-----RLVR-LYGRLQGGDPAK 242
|
170 180
....*....|....*....|....*.
gi 300795419 380 QLEFFSEFQQSMGRSAELMYLHAVLA 405
Cdd:COG3071 243 QLKRAEKWLKKHPNDPDLLLALGRLC 268
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
110-287 |
9.88e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 9.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 110 ALYHAGLFLWHIGRHDKAREYIDRMSKMPHDSNEGPILKAWLDITRGKepyAKKALRYFEEGLQ-DGNDIFALLGKVLCL 188
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR---YEEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 189 EMRQNYSGALETVSQIIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAAA 268
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE-KLGRYEEALE 165
|
170
....*....|....*....
gi 300795419 269 KLENLGNALDVMEPQNAQL 287
Cdd:COG0457 166 LLEKLEAAALAALLAAALG 184
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1198-1302 |
1.19e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1198 SWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAWKHsNQTNPAVGYKLAFNYLK 1277
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-DPDDAEALNNLGLALQA 88
|
90 100
....*....|....*....|....*
gi 300795419 1278 AKRYVDAIDVCHQVLEAHPTYPKIR 1302
Cdd:COG0457 89 LGRYEEALEDYDKALELDPDDAEAL 113
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
896-983 |
1.20e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 896 QRDYEKAITFYREALVHCETDS---KIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEP---ATMLMADLMFRKQDYEQ 969
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDK 85
|
90
....*....|....
gi 300795419 970 AVFHLQQLLERKPD 983
Cdd:COG1729 86 ARATLEELIKKYPD 99
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
804-983 |
1.47e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 45.67 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 804 YEKAEKVLQHSLAHDPVNELSALMVDGRSQV---------------------------LLAKVYSKMERPGDAIAAL--- 853
Cdd:COG3071 66 YERRDEYLAQALELAPEAELAVLLTRAELLLdqgqaeqalatlealragaprhpqvlrLLLQAYRQLGDWEELLELLpal 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 854 --------QQARELQARI---LKRVQMEQPDA-------VPSQRHFAAEICAEIAKHSAAQRDYEKAITFYREALVHCET 915
Cdd:COG3071 146 rkhkalsaEEAQALERRAylgLLRQAARDAEAlkalwkaLPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQWD 225
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 916 DskimlELAQLY--LAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPD 983
Cdd:COG3071 226 P-----RLVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS 290
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
235-442 |
1.88e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.52 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 235 AQRLLLQDGHNVEALRMLALYYLCRegDIEKAAAKLENLGNALDVMEPQNAQLFYKITIAFSRtCGRNQLILqkvqSFLE 314
Cdd:COG4785 25 LLAALLFAAVLALAIALADLALALA--AAALAAAALAAERIDRALALPDLAQLYYERGVAYDS-LGDYDLAI----ADFD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 315 KAFSLTPQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQQLEFFSEFQQSMGRS 394
Cdd:COG4785 98 QALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 300795419 395 AELMYLhavlaTKKNNRQEEVINLLNDVVNTHFSHLEDLPLGIQYFEK 442
Cdd:COG4785 178 ALWLYL-----AERKLDPEKALALLLEDWATAYLLQGDTEEARELFKL 220
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
494-783 |
2.28e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 44.90 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 494 AVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNFNVRDypLYHLIKAQSQ 573
Cdd:COG3071 18 AALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAEL--AVLLTRAELL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 574 KKMGEVAEAIKTLhmamnlpgmrrSRASSKSKHRSEVdgshrlsiFLELVEVHRLNGEQHEAAKVL-----QDAIHEfsg 648
Cdd:COG3071 96 LDQGQAEQALATL-----------EALRAGAPRHPQV--------LRLLLQAYRQLGDWEELLELLpalrkHKALSA--- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 649 tcEELRVTIANADLALAQgDTERALSMLRNVTTEQPYFIEAKEKMADIYLKHRKEKMLYITCYREIAE---RMPSPRSFL 725
Cdd:COG3071 154 --EEAQALERRAYLGLLR-QAARDAEALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREalkRQWDPRLVR 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 300795419 726 LLGDAymNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALK 783
Cdd:COG3071 231 LYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALA 286
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
896-960 |
3.05e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.26 E-value: 3.05e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 300795419 896 QRDYEKAITFYREALVHCETDSKIMLELAQLYLAQEDLDASLRHCALLLQRDQDNEPATMLMADL 960
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
926-1003 |
3.16e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 3.16e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 300795419 926 LYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVfHLQQLLERKPDNFMTLSRLIDLLRRCGKLEE 1003
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
506-592 |
3.96e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.60 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 506 GDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfnvRDYPLYHLIKAQSQKKMGEVAEAIKT 585
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEAYLNLGEALRRLGRLEEAIAA 168
|
....*..
gi 300795419 586 LHMAMNL 592
Cdd:COG3914 169 LRRALEL 175
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
926-1003 |
4.04e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.25 E-value: 4.04e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 300795419 926 LYLAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEE 1003
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
234-382 |
5.12e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.25 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 234 TAQRLLLQDGHNVEALRMLALYYLCREGDIEKAAAKLENLGNALDVMEPQNAQLFYKITIAFSRtcGRnqliLQKVQSFL 313
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKL--GD----FEESLALL 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 300795419 314 EKAFSLTPQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQQLE 382
Cdd:COG5010 78 EQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
493-592 |
6.19e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 6.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 493 QAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfnvRDYPLYHLIKAQS 572
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNLGLA 81
|
90 100
....*....|....*....|
gi 300795419 573 QKKMGEVAEAIKTLHMAMNL 592
Cdd:COG4783 82 LLKAGDYDEALALLEKALKL 101
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
481-594 |
6.44e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 481 LETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNFNVR 560
Cdd:COG4785 96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
|
90 100 110
....*....|....*....|....*....|....*..
gi 300795419 561 DYPLYHLI---KAQSQKKMGEVAEAIKTLHMAMNLPG 594
Cdd:COG4785 176 ERALWLYLaerKLDPEKALALLLEDWATAYLLQGDTE 212
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
109-277 |
6.58e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.07 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 109 KALYHAGLFLWHIGRHDKAREYIDRMSKMPHDSNEGPILKAWLDITRGKepyAKKALRYFEEGLQ-DGNDIFALLGKVLC 187
Cdd:COG0457 43 EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGR---YEEALEDYDKALElDPDDAEALYNLGLA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 188 LEMRQNYSGALETVSQIIVNFPSFLPAFEKKMKLQLALQDWDQTVETAQRLLLQDGHNVEALRMLALYYLCREGDIEKAA 267
Cdd:COG0457 120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
170
....*....|
gi 300795419 268 AKLENLGNAL 277
Cdd:COG0457 200 LLALEQALRK 209
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
849-984 |
7.25e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 849 AIAALQQARELQARILKRVQMEQPDAVPSQRH-FAAEICAEIAKHSAAQRDYEKAITFYREALVHCETDSKIMLELAQLY 927
Cdd:COG4785 38 AIALADLALALAAAALAAAALAAERIDRALALpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAY 117
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 300795419 928 LAQEDLDASLRHCALLLQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDN 984
Cdd:COG4785 118 LLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
689-783 |
1.35e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.18 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 689 AKEKMADIYLKHRKEKMLyitcyREIAERMPSPRSFLLLGDAYMNIQEPEEAIVAYEQALNQN-PKDGTLARKIGKALVK 767
Cdd:COG4700 62 VQRAARNALDPGRELREL-----EKALEFADTVQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFE 136
|
90
....*....|....*.
gi 300795419 768 THNYSKAITYYEAALK 783
Cdd:COG4700 137 LGRYAEALETLEKLIA 152
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
480-553 |
1.70e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 42.67 E-value: 1.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300795419 480 VLETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCL 553
Cdd:COG3914 134 ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1205-1296 |
2.12e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1205 IYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIMEKEQAYtDAAFNYEMAWKHsNQTNPAVGYKLAFNYLKAKRYVDA 1284
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKL-DPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 300795419 1285 IDVCHQVLEAHP 1296
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
835-1101 |
2.81e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.67 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 835 LLAKVYSKMERPGDAIAALQQARELQARILK-RVQMEQPDAVPSQRHFAAEICA----EIAKHSAAQRDYEKAITFYREA 909
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFaAVLALAIALADLALALAAAALAaaalAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 910 LVHcetdskimLELAQLYLAQEDLDASLRhcalllqRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLS 989
Cdd:COG4785 81 VAY--------DSLGDYDLAIADFDQALE-------LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 990 RLidllrrcgkleevprfflmaekhnsrtklepgfqyckGLHFWYTGEPNDALRHFNKARKDSDWGQNALYNMIEICLNP 1069
Cdd:COG4785 146 NR-------------------------------------GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
|
250 260 270
....*....|....*....|....*....|..
gi 300795419 1070 DNEtiggEVFENLNGDLGTSPEKQESVQLAVR 1101
Cdd:COG4785 189 DPE----KALALLLEDWATAYLLQGDTEEARE 216
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1191-1296 |
3.03e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1191 EAEELEKSWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAWKHsNQTNPAVGYK 1270
Cdd:COG5010 49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL-SPDNPNAYSN 127
|
90 100
....*....|....*....|....*.
gi 300795419 1271 LAFNYLKAKRYVDAIDVCHQVLEAHP 1296
Cdd:COG5010 128 LAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
481-592 |
3.20e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 481 LETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfnvR 560
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---P 82
|
90 100 110
....*....|....*....|....*....|..
gi 300795419 561 DYPLYHLIKAQSQKKMGEVAEAIKTLHMAMNL 592
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
721-754 |
3.50e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 3.50e-03
10 20 30
....*....|....*....|....*....|....
gi 300795419 721 PRSFLLLGDAYMNIQEPEEAIVAYEQALNQNPKD 754
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
944-1048 |
3.53e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.76 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 944 LQRDQDNEPATMLMADLMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEVPRFFLMAEKHNSRTklePG 1023
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---AE 77
|
90 100
....*....|....*....|....*
gi 300795419 1024 FQYCKGLHFWYTGEPNDALRHFNKA 1048
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKA 102
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1139-1314 |
3.83e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.76 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1139 EQALNTFTEIAASEKDHIPALLGMATAYMILKQTPKARNQLKRIAKMtwNPieaeELEKSWLLLADIYIQSAKYDMAEEL 1218
Cdd:COG0457 59 EEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALEL--DP----DDAEALYNLGLALLELGRYDEAIEA 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1219 LKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAWKHSNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTY 1298
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
170
....*....|....*.
gi 300795419 1299 PKIRKDILDKARASLR 1314
Cdd:COG0457 213 ILTLAALAELLLLALA 228
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
149-287 |
3.83e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 40.64 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 149 AWLDITRgkepyAKKALRYFEEGLQD--GNDIFALLGKVLCLEMRQNYSGALETVSQIIVNFPSFlpafeKKMKLQL--- 223
Cdd:COG4700 98 ALLELGR-----YDEAIELYEEALTGifADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDF-----KSSDAHLlya 167
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 300795419 224 ----ALQDWDQTvETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAAAKLENLGNALDVMEPQNAQL 287
Cdd:COG4700 168 raleALGDLEAA-EAELEALARRYSGPEARYRYAKFLA-RQGRTAEAKELLEEILDEAKHMPKHYRRL 233
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
505-571 |
4.14e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 4.14e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300795419 505 SGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQlcsQSLELCLSYNFNVRDYPLYHLIKAQ 571
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLD---EAEALLAALPAADPDDPRYAALLAK 64
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
662-753 |
4.27e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 662 LALAQGDTERALSMLRNVTTEQPYFIEAKEKMADIYLKHRKEKMLYItcYREIAERMPS-PRSFLLLGDAYMNIQEPEEA 740
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA--LEKALKLDPNnAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 300795419 741 IVAYEQALNQNPK 753
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
739-910 |
4.43e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 739 EAIVAYEQALNQNPKDGTLARKIGKALVKTHNYSKAITYYEAALKsgqqnclcydlaelllrlklyekaekvlqhsLAHD 818
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR-------------------------------LDPD 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 819 pvnelsalmvDGRSQVLLAKVYSKMERPGDAIAALQQARELQArilkrvqmEQPDAvpsqRHFAAEICAEiakhsaaQRD 898
Cdd:COG4235 50 ----------NADALLDLAEALLAAGDTEEAEELLERALALDP--------DNPEA----LYLLGLAAFQ-------QGD 100
|
170
....*....|..
gi 300795419 899 YEKAITFYREAL 910
Cdd:COG4235 101 YAEAIAAWQKLL 112
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1139-1223 |
4.87e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 38.63 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1139 EQALNTFTEIAASEKDHIPALLGMATAYMILKQTPKARNQLKRIAKMTWNPIEAeeleksWLLLADIYIQSAKYDMAEEL 1218
Cdd:COG4783 55 DEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAA 128
|
....*
gi 300795419 1219 LKRCL 1223
Cdd:COG4783 129 LEKAL 133
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1198-1307 |
5.12e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 40.48 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 1198 SWLLLADIYIQSAKYDMAEELLKRCLCHNRSCCKAYEYMGYIMEKEQAYTDAAFNYEMAwKHSNQTNPAVGYKLAFNYLK 1277
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL-LERDPDRAEALLELAQDYLK 88
|
90 100 110
....*....|....*....|....*....|
gi 300795419 1278 AKRYVDAIDVCHQVLEAHPTYPKIRKDILD 1307
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
960-1050 |
5.51e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 960 LMFRKQDYEQAVFHLQQLLERKPDNFMTLSRLIDLLRRCGKLEEvprfflmAEKHNSRTKLEPGF---QYCKGLHFWYTG 1036
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-------AIALEKALKLDPNNaeaLLNLAELLLELG 73
|
90
....*....|....
gi 300795419 1037 EPNDALRHFNKARK 1050
Cdd:COG3063 74 DYDEALAYLERALE 87
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
663-753 |
7.07e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 663 ALAQGDTERALSMLRNVTTEQP---YFIEAKEKMADIYLKHRKekmlY---ITCYREIAERMPS----PRSFLLLGDAYM 732
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGD----YdeaAEAFEKLLKRYPDspkaPDALLKLGLSYL 78
|
90 100
....*....|....*....|.
gi 300795419 733 NIQEPEEAIVAYEQALNQNPK 753
Cdd:COG1729 79 ELGDYDKARATLEELIKKYPD 99
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
481-592 |
8.64e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.60 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 481 LETIIRSVPGLPQAVFLMAKVKYLSGDTEAAYNNLQHCLEHSPSYAEAHLLMAQVYLSQDKVQLCSQSLELCLSYNfnvR 560
Cdd:COG0457 31 YEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD---P 107
|
90 100 110
....*....|....*....|....*....|..
gi 300795419 561 DYPLYHLIKAQSQKKMGEVAEAIKTLHMAMNL 592
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
230-382 |
9.71e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300795419 230 QTVETAQRLLLQDGHNVEALRMLALYYLcREGDIEKAAAklenlgnaldvmepqnaqlfykitiafsrtcgrnqlilqkv 309
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYL-RLGRYDEALA----------------------------------------- 38
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 300795419 310 qsFLEKAFSLTPQQAEIATELGYQMILQGKVKEAWKWYRTAMTLNESNISAVTGLIRCQLIEGQLQDADQQLE 382
Cdd:COG4235 39 --AYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQ 109
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
728-767 |
9.99e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.14 E-value: 9.99e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 300795419 728 GDAYMNIQEPEEAIVAYEQALNQNPKDGTLARKIGKALVK 767
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| |
