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Conserved domains on  [gi|50659077|ref|NP_446030|]
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V-type proton ATPase subunit e 1 [Rattus norvegicus]

Protein Classification

V-type proton ATPase subunit e( domain architecture ID 10527487)

V-type proton ATPase subunit e is an an essential component of vacuolar ATPase that is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Gene Ontology:  GO:0046961|GO:1902600|GO:0033179
PubMed:  20450191|15473999

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP_synt_H pfam05493
ATP synthase subunit H; ATP synthase subunit H is an extremely hydrophobic of approximately 9 ...
 9-67 5.42e-19

ATP synthase subunit H; ATP synthase subunit H is an extremely hydrophobic of approximately 9 kDa. This subunit may be required for assembly of vacuolar ATPase.


:

Pssm-ID: 461663  Cd Length: 59  Bit Score: 72.57  E-value: 5.42e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 50659077    9 PLIVMSVFWGFVGLLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQ 67
Cdd:pfam05493  1 PILIGTIIWAAVGIVGPFFAPKGPNRGLIRTSLILTAVCCWLMWAITYLAQLNPLIGPR 59
 
Name Accession Description Interval E-value
ATP_synt_H pfam05493
ATP synthase subunit H; ATP synthase subunit H is an extremely hydrophobic of approximately 9 ...
 9-67 5.42e-19

ATP synthase subunit H; ATP synthase subunit H is an extremely hydrophobic of approximately 9 kDa. This subunit may be required for assembly of vacuolar ATPase.


Pssm-ID: 461663  Cd Length: 59  Bit Score: 72.57  E-value: 5.42e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 50659077    9 PLIVMSVFWGFVGLLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQ 67
Cdd:pfam05493  1 PILIGTIIWAAVGIVGPFFAPKGPNRGLIRTSLILTAVCCWLMWAITYLAQLNPLIGPR 59
 
Name Accession Description Interval E-value
ATP_synt_H pfam05493
ATP synthase subunit H; ATP synthase subunit H is an extremely hydrophobic of approximately 9 ...
 9-67 5.42e-19

ATP synthase subunit H; ATP synthase subunit H is an extremely hydrophobic of approximately 9 kDa. This subunit may be required for assembly of vacuolar ATPase.


Pssm-ID: 461663  Cd Length: 59  Bit Score: 72.57  E-value: 5.42e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 50659077    9 PLIVMSVFWGFVGLLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQ 67
Cdd:pfam05493  1 PILIGTIIWAAVGIVGPFFAPKGPNRGLIRTSLILTAVCCWLMWAITYLAQLNPLIGPR 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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