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Conserved domains on  [gi|1065004719|gb|ODV93102|]
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hypothetical protein PACTADRAFT_47148 [Pachysolen tannophilus NRRL Y-2460]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
41-96 8.92e-15

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


:

Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 65.14  E-value: 8.92e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1065004719  41 YSEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGIY 96
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWF 68
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
41-96 8.92e-15

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 65.14  E-value: 8.92e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1065004719  41 YSEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGIY 96
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWF 68
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 42-90 5.33e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 53.35  E-value: 5.33e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSI 90
Cdd:MTH00113   31 NEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 43-116 2.32e-05

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 40.87  E-value: 2.32e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1065004719  43 EKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGIYGLIIFIIFLLILIIGFIYEL 116
Cdd:COG0838    37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLIEMLVFIAILLVGLIYAW 110
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
41-96 8.92e-15

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 65.14  E-value: 8.92e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1065004719  41 YSEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGIY 96
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWF 68
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 42-90 5.33e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 53.35  E-value: 5.33e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSI 90
Cdd:MTH00113   31 NEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 42-85 9.40e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 52.69  E-value: 9.40e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLP 85
Cdd:MTH00069   30 SEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 73
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 42-85 2.40e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 51.46  E-value: 2.40e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLP 85
Cdd:MTH00136   32 HEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLP 75
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 42-93 9.88e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 49.86  E-value: 9.88e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSV 93
Cdd:MTH00148   33 REKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSS 84
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 41-91 1.76e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 49.13  E-value: 1.76e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1065004719  41 YSEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIY 91
Cdd:MTH00203   31 DGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQ 81
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 41-85 2.36e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 48.78  E-value: 2.36e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1065004719  41 YSEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLP 85
Cdd:MTH00106   30 YSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLP 74
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 42-86 5.21e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 48.17  E-value: 5.21e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPY 86
Cdd:MTH00055   36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 43-95 1.50e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 46.69  E-value: 1.50e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1065004719  43 EKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGI 95
Cdd:MTH00161   32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNM 84
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 43-86 6.37e-07

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 45.05  E-value: 6.37e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1065004719  43 EKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPY 86
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPW 75
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 42-96 1.59e-06

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 44.20  E-value: 1.59e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGIY 96
Cdd:MTH00042   32 LEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPS 86
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 43-85 2.59e-06

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 43.69  E-value: 2.59e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1065004719  43 EKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLP 85
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMP 76
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 43-92 3.32e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 43.06  E-value: 3.32e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1065004719  43 EKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYS 92
Cdd:MTH00202   34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKS 83
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 42-86 3.95e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 43.38  E-value: 3.95e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPY 86
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPW 85
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 43-116 2.32e-05

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 40.87  E-value: 2.32e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1065004719  43 EKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGIYGLIIFIIFLLILIIGFIYEL 116
Cdd:COG0838    37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLIEMLVFIAILLVGLIYAW 110
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 42-115 4.57e-05

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 40.23  E-value: 4.57e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1065004719  42 SEKLGPFECGFNSFEQSNNPIPVAFILVALLFLPFDLEVSSLLPYIMSIYSVGIYGLIIFIIFLLILIIGFIYE 115
Cdd:PRK06602   39 REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMIFILVLLVGLVYL 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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