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Conserved domains on  [gi|1065004894|gb|ODV93263|]
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hypothetical protein PACTADRAFT_46824, partial [Pachysolen tannophilus NRRL Y-2460]

Protein Classification

GATA-type transcription factor( domain architecture ID 10078896)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

CATH:  3.30.50.10
Gene Ontology:  GO:0003700|GO:0006357|GO:0008270|GO:0043565
PubMed:  31574210
SCOP:  4003617

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 12-60 1.24e-18

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


:

Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 70.86  E-value: 1.24e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1065004894 12 ECSNCQTTKTPLWRKDAN-GNTLCNACGLFQKLHGTMRPLSLKT-DVIKKR 60
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPSgGSTLCNACGLYWKKHGVMRPLSKRKkDQIKRR 51
 
Name Accession Description Interval E-value
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 12-60 1.24e-18

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 70.86  E-value: 1.24e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1065004894 12 ECSNCQTTKTPLWRKDAN-GNTLCNACGLFQKLHGTMRPLSLKT-DVIKKR 60
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPSgGSTLCNACGLYWKKHGVMRPLSKRKkDQIKRR 51
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
6-60 1.08e-17

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 74.52  E-value: 1.08e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1065004894   6 RPKQLIECSNCQTTKTPLWRKD-----ANGNTLCNACGLFQKLHGTMR-PLSLKTDVIKKR 60
Cdd:COG5641   154 NSNQPHVCSNCKTTSTPLWRRAssessLPGNNLCNACGLYLKLHGSPRaPISLKSDSIKSR 214
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
12-57 2.76e-16

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 64.75  E-value: 2.76e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1065004894  12 ECSNCQTTKTPLWRKDANGN-TLCNACGLFQKLHGTM-RPLSLKTDVI 57
Cdd:smart00401  5 SCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 13-47 1.34e-13

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 57.71  E-value: 1.34e-13
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1065004894 13 CSNCQTTKTPLWRKDANGN-TLCNACGLFQKLHGTM 47
Cdd:pfam00320  1 CSNCGTTKTPLWRRGPNGNrTLCNACGLYYKKKGLK 36
 
Name Accession Description Interval E-value
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 12-60 1.24e-18

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 70.86  E-value: 1.24e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1065004894 12 ECSNCQTTKTPLWRKDAN-GNTLCNACGLFQKLHGTMRPLSLKT-DVIKKR 60
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPSgGSTLCNACGLYWKKHGVMRPLSKRKkDQIKRR 51
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
6-60 1.08e-17

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 74.52  E-value: 1.08e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1065004894   6 RPKQLIECSNCQTTKTPLWRKD-----ANGNTLCNACGLFQKLHGTMR-PLSLKTDVIKKR 60
Cdd:COG5641   154 NSNQPHVCSNCKTTSTPLWRRAssessLPGNNLCNACGLYLKLHGSPRaPISLKSDSIKSR 214
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
12-57 2.76e-16

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 64.75  E-value: 2.76e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1065004894  12 ECSNCQTTKTPLWRKDANGN-TLCNACGLFQKLHGTM-RPLSLKTDVI 57
Cdd:smart00401  5 SCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 13-47 1.34e-13

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 57.71  E-value: 1.34e-13
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1065004894 13 CSNCQTTKTPLWRKDANGN-TLCNACGLFQKLHGTM 47
Cdd:pfam00320  1 CSNCGTTKTPLWRRGPNGNrTLCNACGLYYKKKGLK 36
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
5-60 1.39e-08

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 48.71  E-value: 1.39e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1065004894   5 SRPKQLIECSNC--QTTKTPLWRKDANGNTLCNACGLFQKLHGTMRPLSLKTDVIKKR 60
Cdd:COG5641   292 LVLPSDKKRSTLttSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKR 349
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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