|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
47-765 |
7.83e-72 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 247.82 E-value: 7.83e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 47 SEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGaqfnSIRIRGLNvddanfgdyav 126
Cdd:COG1629 2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAG----QISIRGFG----------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 127 ASVATVSTYVNETPV------YANLALVD---INRVEVLRGPQGTLYGSGALGGTVKYILQEPKLGRlEGRA---AGSIT 194
Cdd:COG1629 67 GGGNRVLVLVDGVPLndpsggDGGLSYIDpedIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGK-GGEVsasYGSYG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 195 NVRGSGSIGHQitgianfpmGDSLALRINVQRQDYPGITDYTNlyeltpegvpvqagtiftkgpnstrytskkdadtYGS 274
Cdd:COG1629 146 TYRASLSLSGG---------NGKLAYRLSASYRDSDGYRDNSD----------------------------------SDR 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 275 WYARAALRFAPSEAFDATLSYIYQNDKsggRRQPSGGLDGTGRAYGEFDNGAVILEPADRELHLGSleASLDLGFATLTS 354
Cdd:COG1629 183 YNLRAKLGYQLGDDTRLTLSASYSDSD---QDSPGYLTLAALRPRGAMDDGTNPYSNDTDDNTRDR--YSLSLEYEHLGD 257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 355 ATSFyensgSSQSDNTGFYANAFAKFYYFYPRPLYTAERTFGDEAFVQEVRLVSTG--AKRFDWVLGAYYQNQTRRSSQV 432
Cdd:COG1629 258 GLKL-----SASAYYRYDDTDLDSDFTPTPADGGTLEQTDFDNRTYGLELRLTYDLgfGGKHTLLVGLDYQRQDLDGSGY 332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 433 SDLVGFqnyaaaffGTRAFVGTDNIFTYRRTDkfkdFALFGELTFNITDRLHLTGGLRYfdntsnvtTFVRTGAYNSIAG 512
Cdd:COG1629 333 PLDLGS--------GSLPTLTSGADDDGTTTS----LALYAQDTYKLTDKLTLTAGLRY--------DYVSYDVDDTVTG 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 513 SVETPFRSKDSDVLFKVNASFEYGDDDLLYATVSEGYRRGGNNGVPIIGRFANDPAFLNYQPDSVTNYELGVKGRIFNG- 591
Cdd:COG1629 393 TDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSVGNPDLKPETSTNYELGLRYRLLDGr 472
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 592 MQYDFSLYNIDWRDPQFNTSAP--VGSYFVVLNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRqsfiDPLGNVIA 669
Cdd:COG1629 473 LSLSLALFYSDVDNEILSVPLPndSGFSTYYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFD----DDTDGSAD 548
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 670 TPGSPLPGIPKHAVSVAADYTvpINDKLSsiFRIDGFYQSSTQNVLDQTVsdsRKFGSFSVWDLTTTLA-SGQWSVSLFV 748
Cdd:COG1629 549 LDGNRLPGVPPLTANLGLTYE--FPGGWS--LGLGVRYVGDRYLDDANTQ---GAPGGYTLVDLGAGYRfGDNLTLSLGV 621
|
730
....*....|....*..
gi 1232144480 749 KNVFDNKGVTGAFTGDA 765
Cdd:COG1629 622 DNLFDKKYATSLSVRAS 638
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
66-797 |
1.89e-52 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 193.44 E-value: 1.89e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 66 NISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGAQFNsirIRGLNvddANFGDYAVASVATVSTYVNETPVYANL 145
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTIS---IRGFG---PDRTLVLVDGLPLASSNYGRGVDLNTI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 146 ALVDINRVEVLRGPQGTLYGSGALGGTVKYILQEPK---LGRLEGRAAGSITNVRGSGSIGHQITgianFPMGDSLALRI 222
Cdd:cd01347 75 PPELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTdefGGSVTAGYGSDNSGSSGGGGFDVSGA----LADDGAFGARL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 223 NVQRQDYPGITDYTNlyeltpegvpvqagtiftkgpnSTRYTSKKDADTYGSWYARaalrfaPSEAFDATLSYIYQNDKS 302
Cdd:cd01347 151 YGAYRDGDGTIDGDG----------------------QADDSDEERYNVAGKLDWR------PDDDTRLTLDAGYQDQDA 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 303 GGRRQPS---GGLDGTGRAYGEFDNGAVILEPADRELHLGSLEASLDLGFATLTSATSFYENSGSSQSDNTGFYANAFAK 379
Cdd:cd01347 203 DGPGGTLpanGTGSSLGGGPSSNTNGDRDWDYRDRYRKRASLGLEHDLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAA 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 380 FYYFYPRPLYTAERTFGDEAFVQEVRLVSTGAKRFDWVLGAYYQNQTRRSSQvsdlvgfqnyaaaffgtrafvgtdnift 459
Cdd:cd01347 283 GGDLGRSGYSSERDTTQLGFDAGLNAPFGTGPVAHTLTLGVEYRREELDEKQ---------------------------- 334
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 460 yrrtdkfkdFALFGELTFNITDRLHLTGGLRYfDNTSNVTTFVRTGAynsiagsveTPFRSKDSDVLFKVNASFEYGDDD 539
Cdd:cd01347 335 ---------TALYAQDTIELTDDLTLTLGLRY-DHYDQDSKDTIAGG---------TTAKKSYSHWSPSLGLVYKLTDGL 395
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 540 LLYATVSEGYRRGGNNGV--PIIGRFANDPAFLNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDWRDPQFNTSAPVGSY 617
Cdd:cd01347 396 SLYASYSQGFRAPSLGELygGGSHGGTAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLG 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 618 --FVVLNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSFIDPLGNviatpgsPLPGIPKHAVSVAADYTVPiND 695
Cdd:cd01347 476 lvTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGATTGN-------RLPGIPKHTANLGLDYELP-DE 547
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 696 KLSsiFRIDGFYQSStQNVLDQTVSDSRKFGSFSVWDLTTTLASGQ-WSVSLFVKNVFDNKgvtgaftgdafgPNAVAQF 774
Cdd:cd01347 548 GLT--AGGGVRYRGK-QYADTANGNNTVKVPGYTLVDLSASYQFTKnLTLRLGVNNLFDKD------------YYTSLSV 612
|
730 740
....*....|....*....|...
gi 1232144480 775 YGSNARTFITLPRTIGIAGQFSF 797
Cdd:cd01347 613 RGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
62-797 |
5.07e-32 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 132.92 E-value: 5.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 62 DVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGprNGAQFNSIRIRGLNVDdanfGDYAVASVATVSTYVNetPV 141
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGSG--GTTQFGNITIRGFGLE----VDIDNVYLDGVPLLSR--GN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 142 YANLALVDINRVEVLRGPQGTLYGSGALGGTV----KYILQEPKlgRLEGRAAGSITNVRGSGSIGHQITGianfpmGDS 217
Cdd:TIGR01783 73 LAIVDPAMVERVEVLRGPASLLYGGSAPGGVInivtKRPQDEPK--GSVTFGAGTRSGYRTAFDLGGPLGA------DGT 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 218 LALRINVQRQDYPGITDytnlyeltpegvpvqagtiftkgpnstRYTSKKDADTYGSWYAraalrfaPSEAFDATLSYIY 297
Cdd:TIGR01783 145 FRGRLNGARQDGDSFYD---------------------------GAGEETRLGATATDWQ-------LDDRTLLRLGAYY 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 298 QNDKSGGRRQP---SGGLDGTG----RAYGEFDNGAVIlepaDRELHLGSLEASLDLGfatltSATSFYENSGSSQSDNT 370
Cdd:TIGR01783 191 QKERDRGGYGGlpaSGGTSGRDlssdRYLGTSSNRNYD----DREYLSYGLSLEYQFN-----DVWTGKQNLRYSYFDTD 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 371 GFYANAFA---KFYYFYPRPLYTAERTFGDEAFVQEVRLVSTGAKRFDWVLGAYYQNQTRRSSQVSDLVGFQNYAAAFFG 447
Cdd:TIGR01783 262 SNQVQASGyssDGGLFGRSLTVVNVKQDRVQIDAGLDGEFETGPIEHDLLLGVSYGQRTTNRFNNTGYPSDNIYSLTATS 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 448 TRAFVGTDNIFTYRRTDKFKDFALFGELTFNITDRLHLTGGLRYFDNTsnvttfvrtgaYNSIAGSVETPFRSKDSDVLF 527
Cdd:TIGR01783 342 SARTDIGDSPKDRALSSTTKALNGVALQRILLADKWTLTLGGRYDSVD-----------VKSNNGVAGSTGKRDDSQFTP 410
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 528 KvnASFEYGDDDL--LYATVSEGYRRGGNNGVPIIgrFANDpaflNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDwRD 605
Cdd:TIGR01783 411 S--LGVAYKPTDDwsLYASYAESFKPGGYYPKGAG--NSGD----ILEPEKGKNYELGVRYDLGDSLLATAALFRIT-KD 481
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 606 PQFnTSAPVGSYFVVlNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRqsfidpLGNVIATPGSPLPGIPKHAVSV 685
Cdd:TIGR01783 482 NQL-VQDPVNGTFSV-NAGKTRNRGVELEARGYLTPGLSLSAGYTYTDAEFT------EDTNGDTQGNTVPFVPKHTASL 553
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 686 AADYTVPiNDKLSSIFRIDGFYQSSTQNVLDQTvsdsRKFGSFSVWDL--TTTLASGQ-WSVSLFVKNVFDNKGVTgaft 762
Cdd:TIGR01783 554 WASYAPP-VGDNGLTLGGGVQYTGKAYVDGGNT----GKVPSYTVVDLsvRYDLTKKKnLTLALNVNNLFDRDYYT---- 624
|
730 740 750
....*....|....*....|....*....|....*
gi 1232144480 763 gdafgpnaVAQFYGSNARTFITLPRTIGIAGQFSF 797
Cdd:TIGR01783 625 --------SGYRWGPSAYIYPGAPRTVGLSVSYDF 651
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
290-767 |
2.99e-26 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 113.33 E-value: 2.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 290 DATLSYIYQNDKSGGRRQPSGGLDGTGRAYGEFDNGAVILEPADRELHLGSLEASLDLgfatltsatSFYENSGSSQSDN 369
Cdd:pfam00593 12 DTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDY---------DLGDGLSWLSTLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 370 TGFYANAFAKFYYFYPRPLYTAERTFGDEAFVQEVRLVSTGAKRFDWVLGAYYqnqtrrsSQVSDLVGFQNYAAAFFGTR 449
Cdd:pfam00593 83 LGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLL-------GVELRTAGLDYRRLDDDAYD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 450 AFVGTDNIFTYRRTDKFKDFALFGELTFNITDRLHLTGGLRYFDNTSNVTTFVRTGAYnsiagsvetpFRSKDSDVLFKV 529
Cdd:pfam00593 156 PYDPANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDN----------FSRSYSAFSPRL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 530 NASFEYGDDDLLYATVSEGYRRGGNNGVPIIGRFANDPAFLNYQPD----SVTNYELGVKGRiFNGMQYDFSLYNIDWRD 605
Cdd:pfam00593 226 GLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAGGNPDlkpeTSDNYELGLKYD-DGRLSLSLALFYIDIKN 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 606 PQFNTSAPVGS---YFVVLNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSfidplgnvIATPGSPLPGIPKHA 682
Cdd:pfam00593 305 LITSDPDGPGLggtVYTYTNVGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDAD--------ADDTGNPLPNVPRHT 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 683 VSVAADYTVPINDklssiFRID-GFYQSSTQNVLDQTVSDSRKFGSFSVWDLTTT-LASGQWSVSLFVKNVFDNKGVTGA 760
Cdd:pfam00593 377 ANLGLTYDFPLGG-----WGARlGARYVGSGERRYGDAANTFKTPGYTLVDLSAGyRLNKNLTLRLGVNNLFDKYYKRYY 451
|
....*..
gi 1232144480 761 FTGDAFG 767
Cdd:pfam00593 452 SSGGGNL 458
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
16-703 |
1.08e-18 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 90.99 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 16 AALACLPIGIAPAAFAQTKVDDAQSPVVtegseiiVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATA 95
Cdd:PRK13483 10 SALCLLPAVFVTHALAQAAPDKTMETVV-------VTASGYEQQIRDAPASISVITREDLENRFYRDLTDALLDVPGVVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 96 IDQGPRNgaqfnSIRIRGLNVDdanfgdYAVASVATVSTYVNETPVYANLALVD---------INRVEVLRGPQGTLYGS 166
Cdd:PRK13483 83 TGGGDRT-----DISLRGMGSQ------YTLILVDGKRQSSRETRPNSDGPGVEqawtpplaaIERIEVIRGPMSSLYGS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 167 GALGGTVKYILQE-PKLGRLEGRAAGSITNVRGSGSIgHQitgiANFPMGDSLAlrinvqrQDYPGITDYTNlyeltpeg 245
Cdd:PRK13483 152 DAIGGVINIITRKvPNEWQGEVRLDTTLQENSDSGNV-YQ----ANFFVNGPLI-------KDLLGLQLYGQ-------- 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 246 vpvqagtiftkgpnstrYTSKKDADTYGSWYARAAlrfapsEAFDATLSYiyqndksggrrQPSggldgtgraygefDNG 325
Cdd:PRK13483 212 -----------------YTQREEDDIEGGYRDKDA------RSLTAKLAL-----------TPN-------------EDH 244
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 326 AVILEPA----DRELHLGSLEASLDLGFA-----TLTSATSFYENSGSSQSdNTGFYANAFAKFYYFYprplytaERTfg 396
Cdd:PRK13483 245 DIMLEVGtsnqERDSTVGKTVAPLAPGEScgrrgCPESSTTEYERSTVSLS-HTGRWDFGTSDTYIQH-------EEF-- 314
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 397 dEAFVQEVRLVSTGAKRfDWV----------LGAYYQNQT---RRSSQVSDLVGFQNYaaaffgtrafvgtdniftyrrt 463
Cdd:PRK13483 315 -DNKSREMKIKNTDFQS-SLVaplgqehtltFGAAYNHQDltdETSNQISDLTDISRT---------------------- 370
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 464 dkfkDFALFGELTFNITDRLHLTGGLRYfDNTSNVTTFVRT---GAYN-----SIAGSVETPFRSKDsdvLFKVNASfey 535
Cdd:PRK13483 371 ----QWAVFSEDEWRIADDFALTGGLRL-DHDENFGGHVSPrvyGVWNlapswTVKGGVSTGFRAPS---LRQTTPD--- 439
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 536 gdddllYATVSegyrRGGNngvpIIGrfanDPaflNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDWRD---------- 605
Cdd:PRK13483 440 ------WGQVS----RGGN----IYG----NP---DLKPETSLNKELGLYYDLGSGLTASLTVFYNEFKDkitrvacpat 498
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 606 -----PQFNTSAPvgSYFVvlNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSfidplgnviATPGSPLPGIPK 680
Cdd:PRK13483 499 qctdgPNQFGADP--TTYV--NIDEAVTQGVEASLSYPITSTLSLSGNYTYTDSEQKSG---------AYKGSPLNQLPK 565
|
730 740
....*....|....*....|...
gi 1232144480 681 HAVSVAADYTvPInDKLSSIFRI 703
Cdd:PRK13483 566 HLFQASLNWE-PT-DRLNSWARV 586
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
47-765 |
7.83e-72 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 247.82 E-value: 7.83e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 47 SEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGaqfnSIRIRGLNvddanfgdyav 126
Cdd:COG1629 2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAG----QISIRGFG----------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 127 ASVATVSTYVNETPV------YANLALVD---INRVEVLRGPQGTLYGSGALGGTVKYILQEPKLGRlEGRA---AGSIT 194
Cdd:COG1629 67 GGGNRVLVLVDGVPLndpsggDGGLSYIDpedIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGK-GGEVsasYGSYG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 195 NVRGSGSIGHQitgianfpmGDSLALRINVQRQDYPGITDYTNlyeltpegvpvqagtiftkgpnstrytskkdadtYGS 274
Cdd:COG1629 146 TYRASLSLSGG---------NGKLAYRLSASYRDSDGYRDNSD----------------------------------SDR 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 275 WYARAALRFAPSEAFDATLSYIYQNDKsggRRQPSGGLDGTGRAYGEFDNGAVILEPADRELHLGSleASLDLGFATLTS 354
Cdd:COG1629 183 YNLRAKLGYQLGDDTRLTLSASYSDSD---QDSPGYLTLAALRPRGAMDDGTNPYSNDTDDNTRDR--YSLSLEYEHLGD 257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 355 ATSFyensgSSQSDNTGFYANAFAKFYYFYPRPLYTAERTFGDEAFVQEVRLVSTG--AKRFDWVLGAYYQNQTRRSSQV 432
Cdd:COG1629 258 GLKL-----SASAYYRYDDTDLDSDFTPTPADGGTLEQTDFDNRTYGLELRLTYDLgfGGKHTLLVGLDYQRQDLDGSGY 332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 433 SDLVGFqnyaaaffGTRAFVGTDNIFTYRRTDkfkdFALFGELTFNITDRLHLTGGLRYfdntsnvtTFVRTGAYNSIAG 512
Cdd:COG1629 333 PLDLGS--------GSLPTLTSGADDDGTTTS----LALYAQDTYKLTDKLTLTAGLRY--------DYVSYDVDDTVTG 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 513 SVETPFRSKDSDVLFKVNASFEYGDDDLLYATVSEGYRRGGNNGVPIIGRFANDPAFLNYQPDSVTNYELGVKGRIFNG- 591
Cdd:COG1629 393 TDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSVGNPDLKPETSTNYELGLRYRLLDGr 472
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 592 MQYDFSLYNIDWRDPQFNTSAP--VGSYFVVLNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRqsfiDPLGNVIA 669
Cdd:COG1629 473 LSLSLALFYSDVDNEILSVPLPndSGFSTYYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFD----DDTDGSAD 548
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 670 TPGSPLPGIPKHAVSVAADYTvpINDKLSsiFRIDGFYQSSTQNVLDQTVsdsRKFGSFSVWDLTTTLA-SGQWSVSLFV 748
Cdd:COG1629 549 LDGNRLPGVPPLTANLGLTYE--FPGGWS--LGLGVRYVGDRYLDDANTQ---GAPGGYTLVDLGAGYRfGDNLTLSLGV 621
|
730
....*....|....*..
gi 1232144480 749 KNVFDNKGVTGAFTGDA 765
Cdd:COG1629 622 DNLFDKKYATSLSVRAS 638
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
55-770 |
8.99e-55 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 200.10 E-value: 8.99e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 55 RREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAidqGPRNGAQFNSIRIRGLNvddanfgdyavasvATVST 134
Cdd:COG4774 1 KTDTPLLDTPQSVTVVTRELIEDQGATSLADALRNVPGVTF---GAGEGGNGDSFSIRGFS--------------ASGDI 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 135 YVNETPVYA--NLALVDINRVEVLRGPQGTLYGSGALGGTVKYILQEPKLGRLeGRAAGSItnvrGSGSiGHQITGIANF 212
Cdd:COG4774 64 YVDGLRDPGqyRRDTFNLERVEVLKGPASVLYGRGSPGGVINLVTKRPTDEPF-TEVTLTY----GSDG-QRRATLDVNG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 213 PMGDSLALRINVQRQDYpgitdytnlyeltpegvpvqagtiftkgpNSTRYTSKKDadtygSWYARAALRFAPSEAFDAT 292
Cdd:COG4774 138 PLGDDLAYRLNGMYRDS-----------------------------DSYRDGVDND-----RWGIAPSLTWRLGDRTRLT 183
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 293 LSYIYQNDksggRRQPSGGL--DGTGRAYGEfDNGAVILEPADR---ELHLGSLEASLDLgfatlTSATSFYENSGSSQS 367
Cdd:COG4774 184 LDYEYQDD----DRTPDYGVpaVANGRPVDV-DRSTFYGQPDDYsdsETDSATLRLEHDF-----NDNWTLRNALRYSDY 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 368 DNTGFYANAF-AKFYYFYPRPLYTAERTfgDEAFVQEVRL---VSTGAKRFDWVLGAYYQNQTRRSSQVSDLVGFQNYAA 443
Cdd:COG4774 254 DRDYRNTYPTgGNATGTVTRSAYRRDQD--NDTLSNQTDLtgkFDTGGVKHTLLAGVEYSREDSDNARYSGGGTAPTVNL 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 444 AFFGTRAFVGTDNIFTYRRTDKFKDFALFGELTFNITDRLHLTGGLRYfdntsnvtTFVRTGAYNSIAGSveTPFRSKDS 523
Cdd:COG4774 332 YNPVYGAPVTGPTLGGADNDSRTDTTGLYLQDTISLTDRWSLLAGLRY--------DRFDTDYTDRTTGA--TTSSYDDS 401
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 524 DVLFKVNASFEYGDDDLLYATVSEGYRrggnngvPIIGRFANDPAFLNYQPDSVTNYELGVKGRIFNG-MQYDFSLYNID 602
Cdd:COG4774 402 AFSPRAGLVYKPTPNLSLYASYSTSFN-------PGGGAPSLSNAGQALDPEKSRQYEVGVKWDLLDGrLSLTAALFRIE 474
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 603 wrdpQFN--TSAPVGSYFVVLNGdRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSfidplgNVIATPGSPLPGIPK 680
Cdd:COG4774 475 ----KTNvrTTDPANPGVYVQTG-EQRSRGVELEATGELTPGWSVLAGYTYLDAEITKS------ANAANVGNRLPNVPR 543
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 681 HAVSVAADYTVPInDKLSsiFRIDGFYQSSTQNVLDQTVsdsrKFGSFSVWDLTTTLA-SGQWSVSLFVKNVFDNKGVTG 759
Cdd:COG4774 544 HSASLWTTYDLPL-PGLT--LGGGVRYVGSRYADAANTV----KLPSYTRFDAGASYRlNKNLTLRLNVNNLTDKRYYAS 616
|
730
....*....|.
gi 1232144480 760 AFTGDAFGPNA 770
Cdd:COG4774 617 AYGSGYVTPGA 627
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
66-797 |
1.89e-52 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 193.44 E-value: 1.89e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 66 NISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGAQFNsirIRGLNvddANFGDYAVASVATVSTYVNETPVYANL 145
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTIS---IRGFG---PDRTLVLVDGLPLASSNYGRGVDLNTI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 146 ALVDINRVEVLRGPQGTLYGSGALGGTVKYILQEPK---LGRLEGRAAGSITNVRGSGSIGHQITgianFPMGDSLALRI 222
Cdd:cd01347 75 PPELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTdefGGSVTAGYGSDNSGSSGGGGFDVSGA----LADDGAFGARL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 223 NVQRQDYPGITDYTNlyeltpegvpvqagtiftkgpnSTRYTSKKDADTYGSWYARaalrfaPSEAFDATLSYIYQNDKS 302
Cdd:cd01347 151 YGAYRDGDGTIDGDG----------------------QADDSDEERYNVAGKLDWR------PDDDTRLTLDAGYQDQDA 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 303 GGRRQPS---GGLDGTGRAYGEFDNGAVILEPADRELHLGSLEASLDLGFATLTSATSFYENSGSSQSDNTGFYANAFAK 379
Cdd:cd01347 203 DGPGGTLpanGTGSSLGGGPSSNTNGDRDWDYRDRYRKRASLGLEHDLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAA 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 380 FYYFYPRPLYTAERTFGDEAFVQEVRLVSTGAKRFDWVLGAYYQNQTRRSSQvsdlvgfqnyaaaffgtrafvgtdnift 459
Cdd:cd01347 283 GGDLGRSGYSSERDTTQLGFDAGLNAPFGTGPVAHTLTLGVEYRREELDEKQ---------------------------- 334
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 460 yrrtdkfkdFALFGELTFNITDRLHLTGGLRYfDNTSNVTTFVRTGAynsiagsveTPFRSKDSDVLFKVNASFEYGDDD 539
Cdd:cd01347 335 ---------TALYAQDTIELTDDLTLTLGLRY-DHYDQDSKDTIAGG---------TTAKKSYSHWSPSLGLVYKLTDGL 395
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 540 LLYATVSEGYRRGGNNGV--PIIGRFANDPAFLNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDWRDPQFNTSAPVGSY 617
Cdd:cd01347 396 SLYASYSQGFRAPSLGELygGGSHGGTAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLG 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 618 --FVVLNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSFIDPLGNviatpgsPLPGIPKHAVSVAADYTVPiND 695
Cdd:cd01347 476 lvTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGATTGN-------RLPGIPKHTANLGLDYELP-DE 547
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 696 KLSsiFRIDGFYQSStQNVLDQTVSDSRKFGSFSVWDLTTTLASGQ-WSVSLFVKNVFDNKgvtgaftgdafgPNAVAQF 774
Cdd:cd01347 548 GLT--AGGGVRYRGK-QYADTANGNNTVKVPGYTLVDLSASYQFTKnLTLRLGVNNLFDKD------------YYTSLSV 612
|
730 740
....*....|....*....|...
gi 1232144480 775 YGSNARTFITLPRTIGIAGQFSF 797
Cdd:cd01347 613 RGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
25-745 |
4.68e-50 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 186.22 E-value: 4.68e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 25 IAPAAFAQTKVDDAQSPVvTEGSEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGA 104
Cdd:COG4771 7 LLLLALAAQAADALAEDA-TELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVTRSGGRGGS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 105 QfnSIRIRGLNvddanfGDYavasvatVSTYVNETPVY----------ANLALVDINRVEVLRGPQGTLYGSGALGGTVK 174
Cdd:COG4771 86 S--GISIRGLG------GDR-------VLVLIDGVPVNnpalggggdlSYIPPDDIERIEVIRGPASALYGSDAIGGVIN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 175 YILQEPKlGRLEGRAAGSITNvrgSGSIGHQITGIANFPmGDSLALRINVQRQDYPGITDYTNLYELTPEGvpvqagtif 254
Cdd:COG4771 151 IITKKPT-DELEGSVSLGYGS---NGNGTYSGSLSLGGP-GDKLSFLLSGSYRDRDGYLDYRNGGFVGNSG--------- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 255 tkgpnstrytskkdadtYGSWYARAALRFAPSEAFDATLSYIYQNDKSGGRRQPSGGLDGTGRAYGEFDNgavilepaDR 334
Cdd:COG4771 217 -----------------YERYNLNAKLGYRLSDNHRLSLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDT--------TT 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 335 ELHLGSLEASLDLGFaTLTSATSFYENSGSSQSDNTGFYANAFakfyyfyprplytaeRTFGDEAFVQEVRLVSTGAKRF 414
Cdd:COG4771 272 DRGNYSLRYNGDLGD-NLDLSLYYSRTDRDSTNGSLGGSTGSF---------------SDSDDTTYGLELDLTYPLGGNH 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 415 DWVLGAYYQNQTRRSSQvsdlvgfqnyaaaffgtrafvgtdniFTYRRTDKFKDFALFGELTFNITDRLHLTGGLRYfDN 494
Cdd:COG4771 336 TLTLGAEYRYDDLDSSS--------------------------FLGGADASRDTYGLFAQDEWKLTDKLTLTAGLRY-DY 388
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 495 TSNVTTfvrtgaynsiagsvetpfrSKDSDVLFKVNASFEYGDDDLLYATVSEGYRRGG---NNGVPIIGRFANDPAFLN 571
Cdd:COG4771 389 YSTFGA-------------------SNYTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSlaeLYGSGTGTPGRYVLGNPD 449
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 572 YQPDSVTNYELGVKGRIFN-GMQYDFSLYNIDWRDP--QFNTSAPVGSYFVVLNGDRARTRGLEAQISGRVGSNLGYALG 648
Cdd:COG4771 450 LKPETSDNYELGLEYRLGNgGLSLSLTGFYTDIKDLivLVPVGPGPGDVLQYENVGKARTYGLELELKYRLGKGLTLTAS 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 649 YAYVDAQVRQSfidplgnviaTPGSPLPGIPKHAVSVAADYTVPINDKLSSifridGFYQSSTQNVLDQTVSDSRKFGSF 728
Cdd:COG4771 530 YTYLDSKIDDG----------DTGEPLPNVPPHKANLGLDYRLPKWWLLLL-----LTRYYGGRYVTPPSGRLEGYTPGY 594
|
730
....*....|....*...
gi 1232144480 729 SVWDLTTT-LASGQWSVS 745
Cdd:COG4771 595 TLLDLRASyKLTKNLTLS 612
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
16-770 |
3.59e-47 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 178.94 E-value: 3.59e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 16 AALACLPIGIAPAAFAQTKVDDAQSP--VVTEGSE--------IIVTANRREQSVLDVPYNISVIGGDSIE--AAQTLDn 83
Cdd:COG4773 8 SGLAAAAAGALAQAAAAAAAEATTLPevTVTGTAEgtggytakSSSTATKLDTPLRETPQSVSVVTRQLIEdqGATTLD- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 84 aELFRSIPGATaidQGPRNGAQFNSIRIRGLNVDdanfgdyavasvatvSTYVNETPVYA------NLALVDinRVEVLR 157
Cdd:COG4773 87 -DALRNVPGVT---VSSYDGGGRDSFSIRGFSID---------------NYLRDGLPLGGfgggqpDTANLE--RVEVLK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 158 GPQGTLYGSGALGGTVKYI----LQEPKlGRLEGRAaGSITNVRGSGSIGHQITGianfpmGDSLALRINVQRQDYPGIT 233
Cdd:COG4773 146 GPAGLLYGAGSPGGLVNLVtkrpTAEPQ-GEVSLSA-GSWDTYRATADVGGPLNE------DGTLRYRLNAAYEDGDSFR 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 234 DYTNlyeltpegvpvqagtiftkgpnSTRYtskkdadtygswYARAALRFAPSEAFDATLSYIYQNDKSGGrrqPSGGLD 313
Cdd:COG4773 218 DGVD----------------------NRRT------------LIAPSLDWDLTDDTTLTLGAEYQDDDSTG---DRGFLP 260
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 314 GTGRAYGeFDNGAVILEPADR-ELHLGSLEASLDLGFA---TLTSATSFYENSGSSQSDNTGFYANAFAKFYYFYPRPLY 389
Cdd:COG4773 261 LDGTLLD-LPRSTNLGEPWDYyDTETTTLFAELEHRFNddwSLRANARYSDSDRDGRSAYAYGAPDAATGTLTRYASARD 339
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 390 TAERTFGDEAFVQevRLVSTGAKRFDWVLGA-YYQNQTRRSSQVSDLVGFQNYAAAFFGTRAFVGTDNIFTYRRTdkfkd 468
Cdd:COG4773 340 GDSRSDSLDANLN--GKFETGGLEHTLLVGAdYSRYDSDSDSATAGTINIYNPVYGNLPEPDFDASDTDTTTRQT----- 412
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 469 fALFGELTFNITDRLHLTGGLRYfDNTSNVTTFVRTGAYNSIAGSVETPFRSkdsdVLFKVnasfeygDDDL-LYATVSE 547
Cdd:COG4773 413 -GLYAQDQISLTDRLSLLLGGRY-DWYETDSTNRLGGSTTSYDDSAFTPRAG----LVYDL-------TPGLsLYASYSE 479
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 548 GYrrggnngVPIIGRFANDPAFlnyQPDSVTNYELGVKGRIFNG-MQYDFSLYNIdwRDPQFNTSAPVGSYFVVLNGdRA 626
Cdd:COG4773 480 SF-------EPQSGADNNGNPL---DPETGKQYEAGVKGELFDGrLNATLAVFDI--TQKNVATTDPDNPNFYVQVG-EV 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 627 RTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSFIDPLGNviatpgsPLPGIPKHAVSVAADYTVPIND--KLSsiFRID 704
Cdd:COG4773 547 RSRGVELELSGELTPGLNLIAGYTYTDAKITKDADALEGK-------RLTNVPRHTASLWTTYRFPSGAlkGLG--LGGG 617
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1232144480 705 GFYQSSTQNVLDQTVsdsrKFGSFSVWDLTTTLA-SGQWSVSLFVKNVFDNKGVTGAFTGDAFGPNA 770
Cdd:COG4773 618 VRYVGERYGDAANTF----TLPSYTLVDAGARYDlGKNWTLQLNVNNLFDKKYYASSGSRGYVYYGA 680
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
25-776 |
2.69e-39 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 155.47 E-value: 2.69e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 25 IAPAAFAQTKVDDAQSPVVTEgSEIIVTANR-REQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGprNG 103
Cdd:COG4772 3 RALAAALLLAAAAAAEAATTL-ETVVVTGSRaAEARLKDVPGSVSVVDREELENQAATSLREVLRRVPGVNVQEED--GF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 104 AQFNSIRIRGLNVDDanfgdyavasVATVSTYVNETPV----------YANLALVDINRVEVLRGPQGTLYGSGALGGTV 173
Cdd:COG4772 80 GLRPNIGIRGLGPRR----------SRGITLLEDGIPIapapygdpaaYYFPDLERMERIEVLRGAAALRYGPQTVGGAI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 174 KYILQEPKlGRLEGRAAGSITNvRGSGSIGHQITGianfpMGDSLALRINVQRQDYPGITDYTnlyeltpegvpvqagti 253
Cdd:COG4772 150 NFVTRTIP-TAFGGELRVTGGS-FGYRRTHASVGG-----TVGNFGYLVEYSRKRGDGFRDNS----------------- 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 254 ftkgpnstrytskkDADTYGswyARAALRFAPSEAFDATLSYIYQNDKSggrRQPsGGL------DGTGRAYGEFDNGAV 327
Cdd:COG4772 206 --------------GFDIND---FNAKLGYRLSDRQELTLKFQYYDEDA---NTP-GGLtdaqfdADPRQSYRPADQFDT 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 328 ilepaDRELhlgsleasLDLGFA-TLTSATSFyensgssqsdNTGFYANAFAKFYYF---------YPRPLYTAERTFGD 397
Cdd:COG4772 265 -----RRTQ--------LSLRYEhQLSDNTTL----------TTTAYYNDFSRNWYIrqntadpntPGLGLRGNPRGYRS 321
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 398 EAFvqEVRL---VSTGAKRFDWVLGA-YYQNQTRRssqvsdlvgFQNYAAAFFGTRAFVGTDNiftyrRTDKFKDFALFG 473
Cdd:COG4772 322 YGI--EPRLthrFELGGVPHTLEVGLrYHREEEDR---------KQYVNTYGQGRSGAGLRRD-----RRFSADALAAYA 385
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 474 ELTFNITDRLHLTGGLRYFDNTSNVTTFVRTGAYNSIAGSVETpfrskdSDVLFKVNASFEYGDDDLLYATVSEGYRrgg 553
Cdd:COG4772 386 QNRFELTGRLTLTPGLRYEHIRRDRTDRYSTRTGGDDSGSNSY------SEFLPGLGLLYQLTDNLQLYANVSRGFE--- 456
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 554 nngVPIIGRFAN-DPAFLNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDWRDPQFNTSAPVGSYFVVLNGDRARTRGLE 632
Cdd:COG4772 457 ---PPTFGDLAYgNGGNPDLKPEKSWNYELGTRGRIGNGLSAEVALFYIDYDNELGSCSAAGGDRSTFTNAGETRHQGLE 533
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 633 AQISGRVGSNLGYAL----GYAYVDAQVRQSFidplGNVIAtpGSPLPGIPKHAVSVAADYTvpiNDKLSsiFRIDGFYQ 708
Cdd:COG4772 534 LALDYDLLKGGGLGLplfaAYTYTDAEFTSDF----GPVFA--GNRLPYVPRHQLTAGLGYE---HGGWT--ANLNGRYV 602
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1232144480 709 SSTQNVLDQTVSDSR--KFGSFSVWDLTTTLA-SGQWSVSLFVKNVFDNKGVTGAFTGDAFG--PNAVAQFYG 776
Cdd:COG4772 603 SEQFTDAANTVADGSfgKIPSYTVLDLSASYDfGKNLSLFAGVNNLFDKRYIASRAPNYAAGirPGPPRTVYA 675
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
62-797 |
5.07e-32 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 132.92 E-value: 5.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 62 DVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGprNGAQFNSIRIRGLNVDdanfGDYAVASVATVSTYVNetPV 141
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGSG--GTTQFGNITIRGFGLE----VDIDNVYLDGVPLLSR--GN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 142 YANLALVDINRVEVLRGPQGTLYGSGALGGTV----KYILQEPKlgRLEGRAAGSITNVRGSGSIGHQITGianfpmGDS 217
Cdd:TIGR01783 73 LAIVDPAMVERVEVLRGPASLLYGGSAPGGVInivtKRPQDEPK--GSVTFGAGTRSGYRTAFDLGGPLGA------DGT 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 218 LALRINVQRQDYPGITDytnlyeltpegvpvqagtiftkgpnstRYTSKKDADTYGSWYAraalrfaPSEAFDATLSYIY 297
Cdd:TIGR01783 145 FRGRLNGARQDGDSFYD---------------------------GAGEETRLGATATDWQ-------LDDRTLLRLGAYY 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 298 QNDKSGGRRQP---SGGLDGTG----RAYGEFDNGAVIlepaDRELHLGSLEASLDLGfatltSATSFYENSGSSQSDNT 370
Cdd:TIGR01783 191 QKERDRGGYGGlpaSGGTSGRDlssdRYLGTSSNRNYD----DREYLSYGLSLEYQFN-----DVWTGKQNLRYSYFDTD 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 371 GFYANAFA---KFYYFYPRPLYTAERTFGDEAFVQEVRLVSTGAKRFDWVLGAYYQNQTRRSSQVSDLVGFQNYAAAFFG 447
Cdd:TIGR01783 262 SNQVQASGyssDGGLFGRSLTVVNVKQDRVQIDAGLDGEFETGPIEHDLLLGVSYGQRTTNRFNNTGYPSDNIYSLTATS 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 448 TRAFVGTDNIFTYRRTDKFKDFALFGELTFNITDRLHLTGGLRYFDNTsnvttfvrtgaYNSIAGSVETPFRSKDSDVLF 527
Cdd:TIGR01783 342 SARTDIGDSPKDRALSSTTKALNGVALQRILLADKWTLTLGGRYDSVD-----------VKSNNGVAGSTGKRDDSQFTP 410
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 528 KvnASFEYGDDDL--LYATVSEGYRRGGNNGVPIIgrFANDpaflNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDwRD 605
Cdd:TIGR01783 411 S--LGVAYKPTDDwsLYASYAESFKPGGYYPKGAG--NSGD----ILEPEKGKNYELGVRYDLGDSLLATAALFRIT-KD 481
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 606 PQFnTSAPVGSYFVVlNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRqsfidpLGNVIATPGSPLPGIPKHAVSV 685
Cdd:TIGR01783 482 NQL-VQDPVNGTFSV-NAGKTRNRGVELEARGYLTPGLSLSAGYTYTDAEFT------EDTNGDTQGNTVPFVPKHTASL 553
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 686 AADYTVPiNDKLSSIFRIDGFYQSSTQNVLDQTvsdsRKFGSFSVWDL--TTTLASGQ-WSVSLFVKNVFDNKGVTgaft 762
Cdd:TIGR01783 554 WASYAPP-VGDNGLTLGGGVQYTGKAYVDGGNT----GKVPSYTVVDLsvRYDLTKKKnLTLALNVNNLFDRDYYT---- 624
|
730 740 750
....*....|....*....|....*....|....*
gi 1232144480 763 gdafgpnaVAQFYGSNARTFITLPRTIGIAGQFSF 797
Cdd:TIGR01783 625 --------SGYRWGPSAYIYPGAPRTVGLSVSYDF 651
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
290-767 |
2.99e-26 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 113.33 E-value: 2.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 290 DATLSYIYQNDKSGGRRQPSGGLDGTGRAYGEFDNGAVILEPADRELHLGSLEASLDLgfatltsatSFYENSGSSQSDN 369
Cdd:pfam00593 12 DTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDY---------DLGDGLSWLSTLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 370 TGFYANAFAKFYYFYPRPLYTAERTFGDEAFVQEVRLVSTGAKRFDWVLGAYYqnqtrrsSQVSDLVGFQNYAAAFFGTR 449
Cdd:pfam00593 83 LGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLL-------GVELRTAGLDYRRLDDDAYD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 450 AFVGTDNIFTYRRTDKFKDFALFGELTFNITDRLHLTGGLRYFDNTSNVTTFVRTGAYnsiagsvetpFRSKDSDVLFKV 529
Cdd:pfam00593 156 PYDPANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDN----------FSRSYSAFSPRL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 530 NASFEYGDDDLLYATVSEGYRRGGNNGVPIIGRFANDPAFLNYQPD----SVTNYELGVKGRiFNGMQYDFSLYNIDWRD 605
Cdd:pfam00593 226 GLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAGGNPDlkpeTSDNYELGLKYD-DGRLSLSLALFYIDIKN 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 606 PQFNTSAPVGS---YFVVLNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSfidplgnvIATPGSPLPGIPKHA 682
Cdd:pfam00593 305 LITSDPDGPGLggtVYTYTNVGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDAD--------ADDTGNPLPNVPRHT 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 683 VSVAADYTVPINDklssiFRID-GFYQSSTQNVLDQTVSDSRKFGSFSVWDLTTT-LASGQWSVSLFVKNVFDNKGVTGA 760
Cdd:pfam00593 377 ANLGLTYDFPLGG-----WGARlGARYVGSGERRYGDAANTFKTPGYTLVDLSAGyRLNKNLTLRLGVNNLFDKYYKRYY 451
|
....*..
gi 1232144480 761 FTGDAFG 767
Cdd:pfam00593 452 SSGGGNL 458
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
47-774 |
1.18e-23 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 106.71 E-value: 1.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 47 SEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIdQGPRNGAQfnSIRIRGLnvddanfGDYAV 126
Cdd:TIGR01785 2 DTVTVTATRTRQVLSEAPASVSVISGEQIESKQANNLADALNTVPGVDVT-GGGRPPGQ--SINIRGL-------QDNRV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 127 ASV------ATVSTYVNETPVYANLALvdINRVEVLRGPQGTLYGSGALGGTVKYILQEPK-LGRLEGRAAGSITNVRGS 199
Cdd:TIGR01785 72 LVVvdgarqNYQRGGAHNGSLFVDPEL--LKRIEIVKGPSSSLYGSGALGGVVAFRTKDAAdLLRPGQLFGGLAKLSYGS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 200 GSIGHQITGIANFPMGDSLALRINVqrqDYPGITDYTNlyeltpegvpvqagtiFTKGPNSTRYTSKKDADTYGSWYARA 279
Cdd:TIGR01785 150 NNNSFGGSVAVAGRLDDNLDALVAA---TYRDGGNYRN----------------GNKEEATNSAYVQKNLLAKLGWQLDD 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 280 ALRFApseafdatLSYIYQNDKsggRRQPSGGLDGTGRAYGEfDNGAVILEPADRELHLGSLEASLDLGFATLTSATSFY 359
Cdd:TIGR01785 211 AQRLE--------FSYFTTEGS---LDEAQNSGPGTEYVLGS-SSTLLASSTRDRSATLTYNWTPEDNPWLDATASLYYN 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 360 ENsgssQSDNTGFYANAFAKFYYFYprplytaeRTFGDEA------FVQEVRLVSTGAkrfDWVlgaYYQNQTRRSSQVS 433
Cdd:TIGR01785 279 RT----ENDNDRSARGVGREEGYQY--------TTYGATLqntsrfDVASWSTLTYGV---DWM---KDKRRTESFDPNS 340
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 434 dlvgfqnyaaaffgtrafVGTDNIFTYRRTDKFkdFALFGELTFNI-TDRLHLTGGLRY----FDNTSNVTTFVRTGAYN 508
Cdd:TIGR01785 341 ------------------VTTIVPNPPSAKEYF--FGLFLQDNIPLlDDRLTLSAGLRYdhykLSPKTTADTEAVDRSYS 400
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 509 SIAGSvetpfrskdsdvlfkVNASFEYGDDDLLYATVSEGYR---------RGGNNGVPIIGRFANDPaflNYQPDSVTN 579
Cdd:TIGR01785 401 RWSPS---------------LGLSYKPVDWLTLYASYSQGFRapsidelygTGDHPGTPGGYTFAPNP---NLKPETSKT 462
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 580 YELGVKGRIFN----------GMQY------DFSLYNIDWRDPQFNTSAPVGSYfvvLNGDRARTRGLEAQISgrvgsnl 643
Cdd:TIGR01785 463 WELGANLSFDNllldndqlqfKVAYfyndvkDFIDLTIGVTDNVTAGMNNITQY---VNIDGARIRGIEASAS------- 532
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 644 gYALGYAYVDAQVRQS-FIDPLGNviatpgSPLPGIPKHAVSVAADYTVPiNDKLSSIFRIDgFY--QSSTQNVLDQTVS 720
Cdd:TIGR01785 533 -YDAGLWATGLSYGYTiGKDQNTN------QWLSNIPPLKLVVTVGYRFP-DRRLDLGAKAA-YYerQSESPTTEDVAAN 603
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1232144480 721 DSRKFGSFSVWDLTTTLASGQW---SVSLFVKNVFDNK-----GVTGAFTGDAFGPNAVAQF 774
Cdd:TIGR01785 604 GLLTTPGYTVVDLYATYQPNAVkglTVRFGVNNLTDRKytpaqSVPGAGPGRNFKGSVKYQF 665
|
|
| TonB-hemlactrns |
TIGR01786 |
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ... |
48-676 |
9.32e-22 |
|
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273808 [Multi-domain] Cd Length: 715 Bit Score: 100.95 E-value: 9.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 48 EIIVTANRREQ----SVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGpRNGAQfnSIRIRGLNvddanfGD 123
Cdd:TIGR01786 2 TITVTATRTADpqrrDLSVTPASVSVISREQLKSQQVRNLRDLLRYEPGVSVVEGG-RGGSQ--GINIRGLD------KN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 124 YAVASVATVS---TYVNETPVYANLALVDIN---RVEVLRGPQGTLYGSGALGGTVKYILQEPKLGRLEGRAAGSITNVr 197
Cdd:TIGR01786 73 RVAVLVDGIRqntSYGGQGSTFYAINSIDPElikSIEIVKGASSSLYGSGALGGVVAFRTKDAADLLKPGKDLGGLSKL- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 198 GSGSIGHQITGIAnfpmgdSLALRInvQRQDYPGITDYTNLYELtpegvpvQAGTIFTKGPNSTRYTSKKDADTYGSWYA 277
Cdd:TIGR01786 152 GYSSANNRFTQSV------AAAGRN--DDVDALVQATYRRGHEL-------KNGNKANIGNESKRSKPNPSDYKSQSFLA 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 278 RAALRFAPSEAFDATLSYIYQ--NDKSGGRRQPSGGLDGTGRAYGEFdngavilEPADRELHLGSleASLDLGFATLTSA 355
Cdd:TIGR01786 217 KLGWQLNDAHRLGLSLEYTQTdyDEPEMTNTSYLTKPLGAPLLSSTV-------VLGDSKTRDRR--TGLDYELNPDNSW 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 356 TSFYENSGSSQSDNTGFYANAFAKFYYFYPRPLYTAERTFGDEAFVQEVRLVST---GAKRFDWVLGAYYQNQTRRSSQV 432
Cdd:TIGR01786 288 LDTVKLALDKQYIQLYNYLNATSASDYPGVDKNGRYKDKYDYYTLGFDTNNKIEfsvHSLSLTYGLDRFKDKVSTGDSRR 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 433 SDLVGFQNyAAAFFGTRAFVGTDNiftyrrtdkfkdFALFGELTFNITDRLHLTGGLRYfDNTSNVTTFVRTGAYNSIAG 512
Cdd:TIGR01786 368 NLPTAAYN-LYGYEGENRPVKGSN------------FGLFLQDNIKLGDWLSLSAGLRY-DHYKTDPKADESKDYGAISK 433
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 513 SvetpfrskDSDVLFKVNASFEYGDDDLLYATVSEGYR---------RGGNNGVPIIGRFANdpafLNYQPDSVTNYELG 583
Cdd:TIGR01786 434 T--------YSRWSPSLGLTYKPTPWLTLYYSYSQGFRapsfdelygTGAHPGGGPYTFLPN----PNLKPETSKNWEIG 501
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 584 VKGRiFNGMQYDFSLYNIDWRD--------PQFNTSAPVGSYFVV--LNGDRARTRGLEAQIS---GRVGSNL-GYALGY 649
Cdd:TIGR01786 502 INLH-FDQLDFKVSYFRNDYKDfidlgigvTAKGNMAQVGSNTITnyVNIDNARIRGIELSGRydlGSFFSGPdGWTTTL 580
|
650 660 670
....*....|....*....|....*....|...
gi 1232144480 650 AYVDAQVRQSFIDPL------GNVIATPGSPLP 676
Cdd:TIGR01786 581 KYGYTKGKDSDTNPWlnaitpLKVVLGLGYDHP 613
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
16-703 |
1.08e-18 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 90.99 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 16 AALACLPIGIAPAAFAQTKVDDAQSPVVtegseiiVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATA 95
Cdd:PRK13483 10 SALCLLPAVFVTHALAQAAPDKTMETVV-------VTASGYEQQIRDAPASISVITREDLENRFYRDLTDALLDVPGVVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 96 IDQGPRNgaqfnSIRIRGLNVDdanfgdYAVASVATVSTYVNETPVYANLALVD---------INRVEVLRGPQGTLYGS 166
Cdd:PRK13483 83 TGGGDRT-----DISLRGMGSQ------YTLILVDGKRQSSRETRPNSDGPGVEqawtpplaaIERIEVIRGPMSSLYGS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 167 GALGGTVKYILQE-PKLGRLEGRAAGSITNVRGSGSIgHQitgiANFPMGDSLAlrinvqrQDYPGITDYTNlyeltpeg 245
Cdd:PRK13483 152 DAIGGVINIITRKvPNEWQGEVRLDTTLQENSDSGNV-YQ----ANFFVNGPLI-------KDLLGLQLYGQ-------- 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 246 vpvqagtiftkgpnstrYTSKKDADTYGSWYARAAlrfapsEAFDATLSYiyqndksggrrQPSggldgtgraygefDNG 325
Cdd:PRK13483 212 -----------------YTQREEDDIEGGYRDKDA------RSLTAKLAL-----------TPN-------------EDH 244
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 326 AVILEPA----DRELHLGSLEASLDLGFA-----TLTSATSFYENSGSSQSdNTGFYANAFAKFYYFYprplytaERTfg 396
Cdd:PRK13483 245 DIMLEVGtsnqERDSTVGKTVAPLAPGEScgrrgCPESSTTEYERSTVSLS-HTGRWDFGTSDTYIQH-------EEF-- 314
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 397 dEAFVQEVRLVSTGAKRfDWV----------LGAYYQNQT---RRSSQVSDLVGFQNYaaaffgtrafvgtdniftyrrt 463
Cdd:PRK13483 315 -DNKSREMKIKNTDFQS-SLVaplgqehtltFGAAYNHQDltdETSNQISDLTDISRT---------------------- 370
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 464 dkfkDFALFGELTFNITDRLHLTGGLRYfDNTSNVTTFVRT---GAYN-----SIAGSVETPFRSKDsdvLFKVNASfey 535
Cdd:PRK13483 371 ----QWAVFSEDEWRIADDFALTGGLRL-DHDENFGGHVSPrvyGVWNlapswTVKGGVSTGFRAPS---LRQTTPD--- 439
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 536 gdddllYATVSegyrRGGNngvpIIGrfanDPaflNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDWRD---------- 605
Cdd:PRK13483 440 ------WGQVS----RGGN----IYG----NP---DLKPETSLNKELGLYYDLGSGLTASLTVFYNEFKDkitrvacpat 498
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 606 -----PQFNTSAPvgSYFVvlNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSfidplgnviATPGSPLPGIPK 680
Cdd:PRK13483 499 qctdgPNQFGADP--TTYV--NIDEAVTQGVEASLSYPITSTLSLSGNYTYTDSEQKSG---------AYKGSPLNQLPK 565
|
730 740
....*....|....*....|...
gi 1232144480 681 HAVSVAADYTvPInDKLSSIFRI 703
Cdd:PRK13483 566 HLFQASLNWE-PT-DRLNSWARV 586
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
49-205 |
2.57e-16 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 79.92 E-value: 2.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 49 IIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGAQfnSIRIRGLNVDDANFgdyavas 128
Cdd:COG4206 1 VVVTATRLEQSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVQVSSSGGPGSAA--SISIRGLGSNQTLV------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 129 vatvstYVNETPVY---------ANLALVDINRVEVLRGPQGTLYGSGALGGTVKYILQEPKlGRLEGRA---AGSITNV 196
Cdd:COG4206 72 ------LIDGVPLNdpslggvdlSLIPPDDIERIEVLKGAASALYGSDAIGGVINITTKKGK-KGFKGSVsasYGSFGTR 144
|
....*....
gi 1232144480 197 RGSGSIGHQ 205
Cdd:COG4206 145 RLSASLSGG 153
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
59-172 |
7.80e-16 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 73.84 E-value: 7.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 59 SVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGAQFNsirIRGLNVDDANF---GdyavasvATVSTY 135
Cdd:pfam07715 1 DLRDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSSGGGGGGSSIS---IRGFGSNRVLVlvdG-------VPLNSG 70
|
90 100 110
....*....|....*....|....*....|....*..
gi 1232144480 136 VNETPVYANLALVDINRVEVLRGPQGTLYGSGALGGT 172
Cdd:pfam07715 71 GGGSVDLNSIDPEDIERVEVLKGPASALYGSGAIGGV 107
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
5-689 |
5.29e-11 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 66.18 E-value: 5.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 5 LKYRLTASAGFAALaCLPIGIAPAAFAQTKVDdaqspvvtegsEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNA 84
Cdd:PRK13484 1 MKNKYIIAPGIAVM-CSAVISSGYASSDKKED-----------TLVVTASGFTQQLRNAPASVSVITSEQLQKKPVSDLV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 85 ELFRSIPGATAidqgpRNGAQFNSIRIRGLNvddanfGDYAVASVATVSTYVNET--------------PVYAnlalvdI 150
Cdd:PRK13484 69 DAVKDVEGISI-----TGGNEKPDISIRGLS------GDYTLILVDGRRQSGRESrpngsggfeagfipPVEA------I 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 151 NRVEVLRGPQGTLYGSGALGGTVKyILQEPKLGRLEGRAAGSITNVRGSGSIGHQITGiaNFPMGDSLAlrinvqrQDYP 230
Cdd:PRK13484 132 ERIEVIRGPMSSLYGSDAIGGVIN-IITKPVNNQTWDGVLGLGGIIQEHGKFGNSTTN--DFYLSGPLI-------KDKL 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 231 GITDYTNLYELTPEGVPVQAGTIFTKGPNSTRYTSKKDADTYGSWYARAALR--FAPSEAFDAtlsyiYQNdkSGGRRQP 308
Cdd:PRK13484 202 GLQLYGGMNYRKEDSISQGTPAKDNKNITATLQFTPTESQKFVFEYGKNNQVhtLTPGESLDA-----WTM--RGNLKQP 274
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 309 SGGLD---------GTGRAYGEFDNG--AVILEPADRELHLGSLEASldlgfatltSATSFYENSGSSQSDNTGFYanaf 377
Cdd:PRK13484 275 NSKREthnsrshwvAAWNAQGEILHPeiAVYQEKVIREVKSGKKDKY---------NHWDLNYESRKPEITNTIID---- 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 378 AKFYYFYPRPLYtaerTFGDEafVQEVRL---VSTGAKrfdwvlgayyqnqTRRSSQVSdlvgfqnyaaaffgtrafvgt 454
Cdd:PRK13484 342 AKVTAFLPENVL----TIGGQ--FQHAELrddSATGKK-------------TTETQSVS--------------------- 381
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 455 dniftyrrtdkFKDFALFGELTFNITDRLHLTGGLRyFDNTSNVTTFVRTGAYN--------SIAGSVETPFR------- 519
Cdd:PRK13484 382 -----------IKQKAVFIENEYAATDSLALTGGLR-LDNHEIYGSYWNPRLYAvynltdnlTLKGGIAKAFRapsirev 449
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 520 SKDSDVLFKVNASFEYGDDDLLYAT-VSEGYRRGGNNGvpiiGRFANDPAFLNYQ-PDSVTNYELGVKGRI--FNGMQYD 595
Cdd:PRK13484 450 SPGFGTLTQGGASIMYGNRDLKPETsVTEEIGIIYSND----SGFSASATLFNTDfKNKLTSYDIGTKDPVtgLNTFIYD 525
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 596 fslynidwrdpqfntsapvgsyfvvlNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQvRQSFIDPLgNVIATPGSPL 675
Cdd:PRK13484 526 --------------------------NVGEANIRGVELATQIPVYDKWHVSANYTFTDSR-RKSDDESL-NGKSLKGEPL 577
|
730
....*....|....
gi 1232144480 676 PGIPKHAVSVAADY 689
Cdd:PRK13484 578 ERTPRHAANAKLEW 591
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
42-176 |
1.30e-10 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 64.91 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 42 VVTEGSEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGP-RNGAQ-------FNSIRIRG 113
Cdd:PRK10064 26 VDDDGETMVVTASAVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDnRKGVSirgldssYTLILIDG 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1232144480 114 LNVDDANfgdyAVASVATVSTyvNETPVYAnlalvdINRVEVLRGPQGTLYGSGALGGTVKYI 176
Cdd:PRK10064 106 KRVNSRN----AVFRHNDFDL--NWIPVDA------IERIEVVRGPMSSLYGSDALGGVVNII 156
|
|
| TonB-B12 |
TIGR01779 |
TonB-dependent vitamin B12 receptor; This model represents the TonB-dependent outer membrane ... |
49-753 |
4.32e-10 |
|
TonB-dependent vitamin B12 receptor; This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins]
Pssm-ID: 273802 [Multi-domain] Cd Length: 614 Bit Score: 62.96 E-value: 4.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 49 IIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRngAQFNSIRIRGLN-------VDDANF 121
Cdd:TIGR01779 31 VVVTANRFAQTASQTLAPVTIITRQDIERTQAKSLPELLRRLPGVSIAQNGGR--GQNTSLFLRGTEsdhvlvlIDGIRF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 122 GDYAVASVAtvstyvnetpvYANLALVDINRVEVLRGPQGTLYGSGALGGTVKYILQEPK--LGRLEGRAAGSITNVRGS 199
Cdd:TIGR01779 109 GSAAAGAAD-----------FQQLPVELVERIEYVRGPRSSLYGSEAIGGVINIITRRRSggQGTTLSAGLGSLDYQEYS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 200 GSIGHQITGIANFPMGdslalrinvqrqdypGITDYTnlyeltpEGVPVQAGTIFTKGPNSTRYTSKkdadtygSWYARA 279
Cdd:TIGR01779 178 IASGVAIGENGWYSVA---------------LGTEST-------KGINVRPGGPGVYDPDRDGFRSD-------SLLLGG 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 280 ALRFAPS-EAFDATLSYIYQNDKSGgrrQPSGGLDGTGRAYGE--FDNGAVILEPADRELHLGSLEASLDLGFAtltsat 356
Cdd:TIGR01779 229 GHRFDESwSLFVNALRYENRNDYDN---YSFGTRLYKEAEKGDqsFTGGRQRQSERDVSELTLSTGKSKDWDYA------ 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 357 sFYENSGSSQSDNTGFYANAfakfyyfyprplYTAERTFGDeafvqevrlVSTGAKRFDWvlgayyQNQTRRSSQVSDlv 436
Cdd:TIGR01779 300 -YSKGRYSSTSDTREQRNIQ------------WQNDLLVGD---------GWVLAGGVDW------QKDSIISSTADK-- 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 437 GFQNYAAAFFGTraFVGTDNIFTYRRTDKFKDFALFG-ELTFNITDRLHLTGGLRYfdntsnvttfvrTGAYNsiagsve 515
Cdd:TIGR01779 350 EDDRSNTAAFAQ--VLQQWGQQLLEASLRRDDNQQFGsHTTGSIAWGYQFIEELRF------------TASYG------- 408
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 516 TPFRSKDSDVLFKVnasfEYGDDDLlyatvsegyrrggnngvpiigrfandpaflnyQPDSVTNYELGVKGRiFNGMQYD 595
Cdd:TIGR01779 409 TAFKAPNLNQLYYP----SYGNPNL--------------------------------QPETSKSAELGFYGL-FSGGKWS 451
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 596 FSLYNIDWRDPQFNTSAPVGSYFVVlngDRARTRGLEAqisgrvgsnlGYALGYAYVDAQVRQSFIDPlGNVIAtpGSPL 675
Cdd:TIGR01779 452 ISGYRTKINDLIDYDSHPKGYPNNI---GEARIKGVEA----------TAEFATGGWTHQLSVDLLDA-QNVNT--GNTL 515
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1232144480 676 PGIPKHAVSVAADYTVPINDKLSSIFRIDGFYQSSTQNVLDQTVsdsrKFGSFSVWDLTTTLA-SGQWSVSLFVKNVFD 753
Cdd:TIGR01779 516 PRRARQMYKWNADRAFEQFDWGASYQYVGKRYDDDYNTYPTQNV----RLGGYSLLDLRVSYYvTDSWTVQGRIANLFD 590
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
8-228 |
7.15e-10 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 62.52 E-value: 7.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 8 RLTASAGFAALAclpIGIAPAAFAQTK--VDDAQSPVVTEGSEI------IVTANRREQSVLDVPYNISVIGGDSI--EA 77
Cdd:PRK09840 11 QFHSLAFFAGLC---IGITPVAQALAAegQTNADDTLVVEASTPslyapdQSADPKFSQPLADTTQTITVISEQVIkdQG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 78 AQTLDNAelFRSIPGATAIDQGPR-NGAQFNSIRIRGLNVDDANFGDyAVASVATVSTYVnetpvyanlalVDINRVEVL 156
Cdd:PRK09840 88 ATNLTEA--LRNVPGVGTFFAGENgNTTTGDAIYMRGFDTSNSIYVD-GIRDIGSISRDT-----------FNTEQVEVI 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1232144480 157 RGPQGTLYGSGALGGTVKYILQEPklgRLEGRAAGSITnvRGSGSIgHQITGIANFPMGDSLALRINVQRQD 228
Cdd:PRK09840 154 KGPSGTDYGRSAPTGSINMISKQP---RNDSGIDASAS--IGSAWF-RRGTLDVNQVIGDTTAVRLNVMGEK 219
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
21-755 |
9.79e-09 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 59.01 E-value: 9.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 21 LPIGIApAAFAQTKVDDAQSPVVTEGSEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDqgp 100
Cdd:PRK13513 11 AALVIA-AAISSQAYAAEKTNTATPTDTMVVTASGFQQRIQDAPASISVVTREQLENKAYRDVTDALKDVPGVVVTG--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 101 rnGAQFNSIRIRGLNvddanfGDYAV-----ASVATVSTYVNE---------TPvyanlALVDINRVEVLRGPQGTLYGS 166
Cdd:PRK13513 87 --GGSTSDISIRGMA------AKYTLilvdgKRVDTRSTRPNSdgsgieqgwLP-----PLAAIERIEVVRGPMSSLYGS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 167 GALGGTVKYI---LQEPKLGRLegRAAGSITNVRGSGSIgHQITGIANFPMGDS-LALRINVQrqdypgitdytnlyelt 242
Cdd:PRK13513 154 DAMGGVINIItrkVQKEWHGSL--RADATLQEDSKSGDI-FQTNAYASGPLIDGlLGLKVSGL----------------- 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 243 pegvpvqagtiftkgpnstryTSKKDADTYGSWYAR-------AALRFAPSEA----FDATlSYIYQNDKSGGRRQPSGG 311
Cdd:PRK13513 214 ---------------------LSHRSEDKIIDGYNEqrmrngtATFSLTPDDNnefdFEIG-RYVQDRNSTPGRTLALNG 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 312 LDGTGRaYgEFDNGAVIlepadrelHLGSLEasldlgFATLTSATSFYENSGSSQ---SDNTGFyaNAFAKFyyfyprpl 388
Cdd:PRK13513 272 TNSDTQ-Y-DRNNYAIT--------HNGYYD------FGNSTSYIQRDETRNPSRqmkSVDTIF--NTQTSF-------- 325
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 389 ytaerTFGDEafvqevrLVSTGakrfdwvlGAY-YQnqtrrssqvsDLVGFQNYAAAffgtrafvgTDNIFTYRRTDkfk 467
Cdd:PRK13513 326 -----LLDDH-------TLSLG--------GQYrYE----------ELYDKGNQLPS---------ASDLNKLTRWS--- 363
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 468 dFALFGELTFNITDRLHLTGGLRYfDNTSNVTTFVRTGAYN--------SIAGSVETPFRSKdsdvlfkvnasfeygddD 539
Cdd:PRK13513 364 -WALFAEDEWQMTNDFALTGGIRM-DQDQNYGTHWTPRLYGvwhladqwTLKGGVSTGYRSP-----------------D 424
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 540 LLYATVSEGYRRGG--NNGVpIIGrfanDPaflNYQPDSVTNYELGVKGRIFNGMQYDFSLYNIDWRD--------PQFN 609
Cdd:PRK13513 425 LRQATDNWGQLTGGggLPAL-ILG----NS---DLKPEKSISQEIGILWDNQENLNASVTLFNTDFKDkitevrncDTTN 496
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 610 TSAPV----GSYFVV---LNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSfidplgnviATPGSPLPGIPKHA 682
Cdd:PRK13513 497 TDGQCvfngINYDFIsdrINVDKANMRGVEATFNWDINQAWSLATNYTFTQSEQKSG---------AFAGQPLNQMPKHM 567
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1232144480 683 VSVAADYTVpiNDKLSSIFRIDgfYQSSTQNVLDQTvSDSRKFGSFSVWDLTTTL-ASGQWSVSLFVKNVFDNK 755
Cdd:PRK13513 568 ANATLNWQT--TEDFATWIRIN--YRGKTSEYLNRT-SMGSGTPSYTFVDLGASYqLTKELRLMGGVYNLLDKR 636
|
|
| btuB |
PRK10641 |
TonB-dependent vitamin B12 receptor BtuB; |
48-183 |
8.47e-07 |
|
TonB-dependent vitamin B12 receptor BtuB;
Pssm-ID: 236730 [Multi-domain] Cd Length: 614 Bit Score: 52.69 E-value: 8.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 48 EIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGataIDQGpRNGA--QFNSIRIRGLN-------VDD 118
Cdd:PRK10641 27 TLVVTANRFQQPVSTVLAPTTVVTRDDIDRWQSKSVNDVLRRLPG---VDIA-QNGGlgQLSSLFIRGTNsshvlvlIDG 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1232144480 119 ANFGDYAVASVATVStyvnETPVyanlALVdiNRVEVLRGPQGTLYGSGALGGTVKYILQEPKLG 183
Cdd:PRK10641 103 VRLNQAGISGSADLS----QIPI----SLV--QRIEYIRGPRSAVYGSDAIGGVVNIITTRDKPG 157
|
|
| PRK14050 |
PRK14050 |
TonB-dependent siderophore receptor; |
5-759 |
1.96e-06 |
|
TonB-dependent siderophore receptor;
Pssm-ID: 237595 [Multi-domain] Cd Length: 728 Bit Score: 51.34 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 5 LKYRLTASAGFAALACLPIGIAPAAFA-----------QTKVDDAQSPVVTEGSEIIVTANRREQSVLDVPYNISVIGG- 72
Cdd:PRK14050 10 FMMLLAAGVALAALVLSGLVAAQEGNTtqletivveggNAASATATGPVDGYVAKATATGSKTDTPITEIPQSVSVVGRq 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 73 --DSIEAAQTLDnaELFRSIPGATAIDQGPRNGAQFNSIR----------IRGLNVDDANFGDYAVASVAtvstyvnetp 140
Cdd:PRK14050 90 emDDRGVTNKVD--EALRYTPGVLSQPFGTDGDTDWFYIRgfdatqtgvfLDGLNLFSYGFGGFQIDPFM---------- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 141 vyanlalvdINRVEVLRGPQGTLYGSGALGGTVKYILQEPKLGRLegraagsITNVRGSGSIGHQITGianFPMGDSLAl 220
Cdd:PRK14050 158 ---------LERVEVLKGPASVLYGGSNPGGIVNMVSKRPLDEPL-------YYTEIGINSYGNAFTG---FDVGDKLS- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 221 rinvqrqdypgiTDYTNLYELTpegvpvqaGTIfTKGPNSTRYTSkkdaDTYGswYARAALRFAPSEAFDAT----LSYI 296
Cdd:PRK14050 218 ------------DDGTVRYRVT--------GKV-AGGDNYSDYSE----DLRG--FIMPQITYAPDDATSLTvygyLSGL 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 297 YQNDKSGGRRQPSGGLDGTgrAYGEFDNGAVILEPADRELHlgSLEASLDLGFA-TLTSATSFYENS--GSSQSDNTGFY 373
Cdd:PRK14050 271 DQVHVGNGFLPYVGTVVDA--PFGKIDRDAFYGEPDIDNGS--YAQQMLGYEFShEFDNGWTFSQNAryGHLHKHEKGPY 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 374 ANAFAKFYYFYPRPL---YTAER-----TFGDEAFVQEVRL---VSTGAKRFDWVLG---AYYQNQTRRSSQVSDLVGFQ 439
Cdd:PRK14050 347 TYGYVGGATGLPDPTgpdYMLNRigfehRSKVDSFSIDNRLegeFDTGALTHNLLFGldyKYYRLDQVQACCGATPISAT 426
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 440 NyaaAFFGTRA---FVGTDNIFTYRRTDKF-KDFALFGE---LTFNitdrlhltGGLRYFDNTSNvttfvrtgaynsiaG 512
Cdd:PRK14050 427 N---PVYGTTQganFVYLDQILTQQQIGIYaQDQIRFGDgwlVTLN--------GRYDYVDTDSD--------------A 481
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 513 SVETPFRSKDSDVLFKVNASFEYGDDDLLYATVSEGYRrggnngvPIIGRFANDPAFlnyQPDSVTNYELGVKGR--IFN 590
Cdd:PRK14050 482 RIGTSYESNDGALSGRAGLAYEFDNGLTPYVSAATFFN-------PLVGTLASGPPL---KPEEGEQYEAGIKYEpsFID 551
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 591 GMqYDFSLYNIDWRdpqfNTSAPVGSYFVVLNGDRARTRGLEAQISGRVGSNLGYALGYAYVDAQVRQSfIDP--LGNvi 668
Cdd:PRK14050 552 GL-ITASVFQITKK----NVTVTDPLTFASTQLGEVRSRGFELEGKVNLDDNWKALASFTYTDLEITED-ANPslIGN-- 623
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 669 atpgSPLPgIPKHAVSVAADYTVPiNDKLSSIFRIDGF-YQSSTQnvldQTVSDSRKFGSFSVWDLTTTLASGQWSVSLF 747
Cdd:PRK14050 624 ----SPYL-VPETQASLWLDYAVT-DGAFEGVSLGAGVrYQGESW----ADEANTLKVPAATLFDAAIRYEKNDWGASLN 693
|
810
....*....|..
gi 1232144480 748 VKNVFDNKGVTG 759
Cdd:PRK14050 694 VANLFDKEYVAG 705
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
49-179 |
3.34e-06 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 50.79 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 49 IIVTANRREQSVLDVPYNISVIGGDSIEAAQTLDNAELFRSIPGATAIDQGPRNGAQfnSIRIRGLnvdDANFGDYAVAS 128
Cdd:PRK13486 28 MIVSASGYEKKLTNAAASVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGL--EISIRGM---PASYTLILIDG 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1232144480 129 VATVSTyVNETPV-YANL------ALVDINRVEVLRGPQGTLYGSGALGGTVKYILQE 179
Cdd:PRK13486 103 VRQGGS-SDVTPNgFSAMntgfmpPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRK 159
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
17-222 |
1.09e-04 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 45.79 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 17 ALACLPIGIAPAAF-AQTKVDDAQSPVVTEGSEIIVTANRREQSVLDVpyniSVIGGDSIE-AAQTLDNAELFRSIPGAT 94
Cdd:PRK13524 8 LALLVNLGIYGVAQaAEAEDAKTDDTPASHEDTIVVTAAEQNLQAPGV----STITAEDIRkRPPANDVSEIIRTMPGVN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 95 --------------AID---QGPRNgaqfNSIRIRGLNVDDANFGDYAVASVATVSTYVNETPVYAnlalvdINRVEVLR 157
Cdd:PRK13524 84 ltgnstsgqrgnnrQIDirgMGPEN----TLILIDGKPVSSRNSVRYGWRGERDTRGDTNWVPPEM------IERIEVLR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1232144480 158 GPQGTLYGSGALGGTVKYILQEPklgrlEGRAAGSI---TNVRGSGSIGhqITGIANF----PMGDSLALRI 222
Cdd:PRK13524 154 GPAAARYGNGAAGGVVNIITKKP-----TGEWHGSWntyFNAPEHKAEG--ATKRTNFslsgPLGDELSFRL 218
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
149-228 |
1.20e-04 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 45.52 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 149 DINRVEVLRGPQGTLYGSGALGGTVKYILQEPKlgrleGRAAGSI---TNVRGSGSIGHqiTGIANFP-----MGDSLAL 220
Cdd:PRK13528 143 MVERIEVIRGPAAARYGSGAAGGVVNIITKRPT-----NDWHGSLslyTNQPESSKEGA--TRRANFSlsgplAGDALTM 215
|
90
....*....|
gi 1232144480 221 RI--NVQRQD 228
Cdd:PRK13528 216 RLygNLNKTD 225
|
|
| PRK14049 |
PRK14049 |
ferrioxamine B receptor precursor protein; Provisional |
481-725 |
2.85e-04 |
|
ferrioxamine B receptor precursor protein; Provisional
Pssm-ID: 172541 [Multi-domain] Cd Length: 726 Bit Score: 44.51 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 481 DRLHLTGGLRYFDNTSNVTTFVrtgaynsIAGSVETPFRSKDSDVLFKVNASFEYGDDDLLYATVSEGYrrGGNNGvpiI 560
Cdd:PRK14049 443 DAWTLTAGGRYDWVSTDTDTTD-------LATDSLTTVSQKDKEFSGRIGLTYETDFGLAPYISYSTAF--SPNAG---F 510
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 561 GRFANDPAflnyQPDSVTNYELGVKGRIFN-GMQYDFSLYNIDWRDPQF--NTSAPVGSYFVVLNGDRARTRGLEAQISG 637
Cdd:PRK14049 511 NRATNQPF----KPTESEQQEVGVKYLLPNsNTLITAALFNIDQTNGLYyeVVFLAAGPTNIQVQRGKLRSRGFELEANT 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 638 RVGSNLGYALGYAYVDAQVRQSFIDPLGNVIATpgsplpgIPKHAVSVAADYTVPINDKLSSIFRIDG--FYQSSTQNVL 715
Cdd:PRK14049 587 SLDNGLSLIASYTYTDVKIIQGPEGTIGNEVSS-------VPNHMASAWAHYTLPEGGPLYGLGLGAGarFVGSSYGNDQ 659
|
250
....*....|
gi 1232144480 716 DQTVSDSRKF 725
Cdd:PRK14049 660 NTFKNSSRVL 669
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
10-180 |
7.74e-03 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 39.74 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 10 TASAGFAALACLP-------IGIAPAAFAQtkvDDAQSPVVTEGSEIIVTANRREQSVLDVPYNISVIGGDSIEAAQTLD 82
Cdd:PRK10044 22 TAVSGMSVYAQAAvepkeetITVTAAPAPQ---ESAWGPAATIAAKRSATGTKTDTPIEKTPQSISVVTAEEMALHQPKS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232144480 83 NAELFRSIPGATAIDQGPRNGaqFNSIRIRGLNVDDANFGDYAVASVATVSTYvnetpvyaNLALVD---INRVEVLRGP 159
Cdd:PRK10044 99 VKEALSYTPGVSVGTRGASNT--YDHLIIRGFAASGQSQNNYLDGLKLQGNFY--------NDAVIDpymLERAELMRGP 168
|
170 180
....*....|....*....|.
gi 1232144480 160 QGTLYGSGALGGTVKYILQEP 180
Cdd:PRK10044 169 VSVLYGKSNPGGLLNMVSKRP 189
|
|
| |
