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Conserved domains on  [gi|1232152854|gb|OYU85794|]
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MAG: histidine kinase [Flavobacterium sp. BFFFF2]

Protein Classification

2TM domain-containing protein( domain architecture ID 10591236)

2TM domain-containing protein contains two transmembrane alpha helices that are found associated with a wide range of other domains

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
2TM pfam13239
2TM domain; This short region contains two transmembrane alpha helices that are found ...
 15-93 2.90e-21

2TM domain; This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.


:

Pssm-ID: 463815  Cd Length: 80  Bit Score: 79.96  E-value: 2.90e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1232152854  15 RGKKRVLALKVFYGNLISYVVVIALLAVINYKYSPEIIWFCWPALGWGTGLFLRWMTLFGLPMWLGKDWEAKKIKEFMA 93
Cdd:pfam13239   2 RAKKRVKRKKGFYKHLGVYLIVNAFLILINLLTGGGLPWFLWPLLGWGLGLLLHAWNVFQTEPFEGKFWEEKKIEKLME 80
 
Name Accession Description Interval E-value
2TM pfam13239
2TM domain; This short region contains two transmembrane alpha helices that are found ...
 15-93 2.90e-21

2TM domain; This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.


Pssm-ID: 463815  Cd Length: 80  Bit Score: 79.96  E-value: 2.90e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1232152854  15 RGKKRVLALKVFYGNLISYVVVIALLAVINYKYSPEIIWFCWPALGWGTGLFLRWMTLFGLPMWLGKDWEAKKIKEFMA 93
Cdd:pfam13239   2 RAKKRVKRKKGFYKHLGVYLIVNAFLILINLLTGGGLPWFLWPLLGWGLGLLLHAWNVFQTEPFEGKFWEEKKIEKLME 80
 
Name Accession Description Interval E-value
2TM pfam13239
2TM domain; This short region contains two transmembrane alpha helices that are found ...
 15-93 2.90e-21

2TM domain; This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.


Pssm-ID: 463815  Cd Length: 80  Bit Score: 79.96  E-value: 2.90e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1232152854  15 RGKKRVLALKVFYGNLISYVVVIALLAVINYKYSPEIIWFCWPALGWGTGLFLRWMTLFGLPMWLGKDWEAKKIKEFMA 93
Cdd:pfam13239   2 RAKKRVKRKKGFYKHLGVYLIVNAFLILINLLTGGGLPWFLWPLLGWGLGLLLHAWNVFQTEPFEGKFWEEKKIEKLME 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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