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Conserved domains on  [gi|850992096|ref|WP_048061411|]
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KEOPS complex subunit Pcc1 [Hyperthermus butylicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pcc1 COG2892
tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit [Translation, ...
 1-82 1.05e-17

tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit [Translation, ribosomal structure and biogenesis]; tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit is part of the Pathway/BioSystem: tRNA modification


:

Pssm-ID: 442137  Cd Length: 82  Bit Score: 70.28  E-value: 1.05e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850992096  1 MYRVTGCIELELPEEKALQAVARALDVEARNPPDpRRGRVEVRVEPGKLVVCFEARDLAAARTLANTYLSLAATTVEVVA 80
Cdd:COG2892   1 MMMHRAELEFEYDDEERARAIYRSLLPEVGEIDD-DRSRVTISLDGNTIVIEIEADDLSALRAALNSWLRLIKVAEEILE 79


                ..
gi 850992096 81 AT 82
Cdd:COG2892  80 IA 81
 
Name Accession Description Interval E-value
Pcc1 COG2892
tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit [Translation, ...
 1-82 1.05e-17

tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit [Translation, ribosomal structure and biogenesis]; tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 442137  Cd Length: 82  Bit Score: 70.28  E-value: 1.05e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850992096  1 MYRVTGCIELELPEEKALQAVARALDVEARNPPDpRRGRVEVRVEPGKLVVCFEARDLAAARTLANTYLSLAATTVEVVA 80
Cdd:COG2892   1 MMMHRAELEFEYDDEERARAIYRSLLPEVGEIDD-DRSRVTISLDGNTIVIEIEADDLSALRAALNSWLRLIKVAEEILE 79


                ..
gi 850992096 81 AT 82
Cdd:COG2892  80 IA 81
Pcc1 pfam09341
Transcription factor Pcc1; Pcc1 is a transcription factor that functions in regulating genes ...
 8-78 2.16e-07

Transcription factor Pcc1; Pcc1 is a transcription factor that functions in regulating genes involved in cell cycle progression and polarised growth.


Pssm-ID: 462764  Cd Length: 75  Bit Score: 43.71  E-value: 2.16e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850992096   8 IELELPEEKALQAVARALDVEARnPPDPRRGRVEVRVEPGKLVVCFEARDLAAARTLANTYLSLAATTVEV 78
Cdd:pfam09341  4 LEIPFPTEREAEIAYRSLAPDLE-PSPDLRVRRELSVDGNTLVVTIEATDLRSLRASVNSFLDLLKLVEET 73
PRK14887 PRK14887
KEOPS complex Pcc1-like subunit; Provisional
 1-71 2.66e-05

KEOPS complex Pcc1-like subunit; Provisional


Pssm-ID: 237849  Cd Length: 84  Bit Score: 38.37  E-value: 2.66e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850992096  1 MYRVTGCIELELPEEKALQAVARALDVEARNPPDpRRGRVEVRVEPGKLVVCFEARDLAAARTLANTYLSL 71
Cdd:PRK14887  1 MRMHKFTLEFEFETEERARIIYRSVLPEHGDSQG-ERSKADLSLDGNTIVITIEAEDLSALRASLNSWLRL 70
 
Name Accession Description Interval E-value
Pcc1 COG2892
tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit [Translation, ...
 1-82 1.05e-17

tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit [Translation, ribosomal structure and biogenesis]; tRNA threonylcarbamoyladenosine modification (KEOPS) complex, Pcc1 subunit is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 442137  Cd Length: 82  Bit Score: 70.28  E-value: 1.05e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850992096  1 MYRVTGCIELELPEEKALQAVARALDVEARNPPDpRRGRVEVRVEPGKLVVCFEARDLAAARTLANTYLSLAATTVEVVA 80
Cdd:COG2892   1 MMMHRAELEFEYDDEERARAIYRSLLPEVGEIDD-DRSRVTISLDGNTIVIEIEADDLSALRAALNSWLRLIKVAEEILE 79


                ..
gi 850992096 81 AT 82
Cdd:COG2892  80 IA 81
Pcc1 pfam09341
Transcription factor Pcc1; Pcc1 is a transcription factor that functions in regulating genes ...
 8-78 2.16e-07

Transcription factor Pcc1; Pcc1 is a transcription factor that functions in regulating genes involved in cell cycle progression and polarised growth.


Pssm-ID: 462764  Cd Length: 75  Bit Score: 43.71  E-value: 2.16e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850992096   8 IELELPEEKALQAVARALDVEARnPPDPRRGRVEVRVEPGKLVVCFEARDLAAARTLANTYLSLAATTVEV 78
Cdd:pfam09341  4 LEIPFPTEREAEIAYRSLAPDLE-PSPDLRVRRELSVDGNTLVVTIEATDLRSLRASVNSFLDLLKLVEET 73
PRK14887 PRK14887
KEOPS complex Pcc1-like subunit; Provisional
 1-71 2.66e-05

KEOPS complex Pcc1-like subunit; Provisional


Pssm-ID: 237849  Cd Length: 84  Bit Score: 38.37  E-value: 2.66e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850992096  1 MYRVTGCIELELPEEKALQAVARALDVEARNPPDpRRGRVEVRVEPGKLVVCFEARDLAAARTLANTYLSL 71
Cdd:PRK14887  1 MRMHKFTLEFEFETEERARIIYRSVLPEHGDSQG-ERSKADLSLDGNTIVITIEAEDLSALRASLNSWLRL 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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