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Conserved domains on  [gi|1798949385|ref|WP_160114578|]
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hypothetical protein [Aquimarina sp. AU474]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 5-97 1.07e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1798949385   5 KIIFIAFVICFTI----NMRAQEEEEFEILSVQIEQTIALIQEKQERIQILEEYIKTLNSLDDNRVKEIKNKEDEIEKLR 80
Cdd:COG4942     3 KLLLLALLLALAAaaqaDAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82

                          90
                  ....*....|....*..
gi 1798949385  81 FEILNTSLKLNTLKQQQ 97
Cdd:COG4942    83 AELAELEKEIAELRAEL 99
 
Name Accession Description Interval E-value
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 5-97 1.07e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1798949385   5 KIIFIAFVICFTI----NMRAQEEEEFEILSVQIEQTIALIQEKQERIQILEEYIKTLNSLDDNRVKEIKNKEDEIEKLR 80
Cdd:COG4942     3 KLLLLALLLALAAaaqaDAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82

                          90
                  ....*....|....*..
gi 1798949385  81 FEILNTSLKLNTLKQQQ 97
Cdd:COG4942    83 AELAELEKEIAELRAEL 99
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
 19-100 5.86e-03

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 37.82  E-value: 5.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1798949385  19 MRAQEEEEFEILSVQI----EQTIALIQEKQERIQILEEYIKTLNSLDDNRVKE-------IKNKEDEIEKLRFEILNTS 87
Cdd:pfam09787  80 LEAQQQEEAESSREQLqeleEQLATERSARREAEAELERLQEELRYLEEELRRSkatlqsrIKDREAEIEKLRNQLTSKS 159

                          90
                  ....*....|...
gi 1798949385  88 lkLNTLKQQQLDS 100
Cdd:pfam09787 160 --QSSSSQSELEN 170
 
Name Accession Description Interval E-value
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 5-97 1.07e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1798949385   5 KIIFIAFVICFTI----NMRAQEEEEFEILSVQIEQTIALIQEKQERIQILEEYIKTLNSLDDNRVKEIKNKEDEIEKLR 80
Cdd:COG4942     3 KLLLLALLLALAAaaqaDAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82

                          90
                  ....*....|....*..
gi 1798949385  81 FEILNTSLKLNTLKQQQ 97
Cdd:COG4942    83 AELAELEKEIAELRAEL 99
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
 19-100 5.86e-03

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 37.82  E-value: 5.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1798949385  19 MRAQEEEEFEILSVQI----EQTIALIQEKQERIQILEEYIKTLNSLDDNRVKE-------IKNKEDEIEKLRFEILNTS 87
Cdd:pfam09787  80 LEAQQQEEAESSREQLqeleEQLATERSARREAEAELERLQEELRYLEEELRRSkatlqsrIKDREAEIEKLRNQLTSKS 159

                          90
                  ....*....|...
gi 1798949385  88 lkLNTLKQQQLDS 100
Cdd:pfam09787 160 --QSSSSQSELEN 170
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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