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Conserved domains on  [gi|2468518855|ref|WP_276814727|]
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complex I subunit 1 family protein [Desulfurococcus amylolyticus]

Protein Classification

complex I subunit 1/NuoH family protein( domain architecture ID 10002943)

complex I subunit 1/NuoH family protein such as bacterial NADH-quinone oxidoreductase subunit H (NuoH) that is part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  7.1.1.-
Gene Ontology:  GO:0048038|GO:0016655|GO:0016020
SCOP:  4005664

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
5-324 1.25e-68

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440629  Cd Length: 329  Bit Score: 217.31  E-value: 1.25e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   5 IIFLIQALIypGLLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLIVISI 84
Cdd:COG1005     9 LITLIKALV--ILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  85 VIGALITVFSVTPIAIKPLYADFDI--IILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISMLVPVI 162
Cdd:COG1005    87 AFIPALLAFAVIPFGPGLVLADLNVglLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 163 IASryfnagySLYPTSLVSPQ---LWTInplktLSMVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLAL 239
Cdd:COG1005   167 LAG-------SLNLSEIVEAQaggLWFI-----LPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFAL 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 240 GFFAKFAEKIVYPLIYVLLFLGG-AWPFNG---DWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLS 315
Cdd:COG1005   235 FFLAEYANMFLVSALATTLFLGGwLGPFPIlplGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLS 314

                  ....*....
gi 2468518855 316 IISLILALA 324
Cdd:COG1005   315 LVNLVLTAA 323
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
5-324 1.25e-68

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 217.31  E-value: 1.25e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   5 IIFLIQALIypGLLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLIVISI 84
Cdd:COG1005     9 LITLIKALV--ILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  85 VIGALITVFSVTPIAIKPLYADFDI--IILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISMLVPVI 162
Cdd:COG1005    87 AFIPALLAFAVIPFGPGLVLADLNVglLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 163 IASryfnagySLYPTSLVSPQ---LWTInplktLSMVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLAL 239
Cdd:COG1005   167 LAG-------SLNLSEIVEAQaggLWFI-----LPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFAL 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 240 GFFAKFAEKIVYPLIYVLLFLGG-AWPFNG---DWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLS 315
Cdd:COG1005   235 FFLAEYANMFLVSALATTLFLGGwLGPFPIlplGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLS 314

                  ....*....
gi 2468518855 316 IISLILALA 324
Cdd:COG1005   315 LVNLVLTAA 323
NADHdh pfam00146
NADH dehydrogenase;
17-323 5.62e-66

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 209.64  E-value: 5.62e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  17 LLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLIVISIVIGALITVFSVT 96
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  97 PIAIKPLYADFDI--IILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISMLVPVIIASryfnagySL 174
Cdd:pfam00146  86 PFGPGLVLADLNVgiLYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG-------SL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 175 YPTSLVSPQLWTINPlktLSMVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLALGFFAKFAEKIVYPLI 254
Cdd:pfam00146 159 SLSEIVEAQAGGWFI---PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSAL 235
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 255 YVLLFLGG-AWPFNgdwILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLSIISLILAL 323
Cdd:pfam00146 236 AVTLFLGGwLGPFP---LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-324 4.92e-38

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 137.63  E-value: 4.92e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQALIYPGLLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLI 80
Cdd:PRK06076    4 FGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  81 VISIVIGALITVFSVTPIAIKPLYADFDI--IILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISML 158
Cdd:PRK06076   84 APVIAFIPAFLAWAVIPFGPELVIADLNVgiLYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 159 VPVIIASryfnagySLYPTSLVSPQ--LWTINPLkTLSMVLASIAGFLGLMSIlmikPFDTPEAESELYWGIFTELGGPR 236
Cdd:PRK06076  164 AVVLLAG-------SLNLSDIVEAQflSWNIIPQ-PPAFVVFFIAAVAETNRH----PFDLPEAESELVAGYHTEYSGMK 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 237 LALGFFAKFAEKIVYPLIYVLLFLGG--AWPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPL 314
Cdd:PRK06076  232 FGLFFLGEYINMILVSALITTLFLGGwlPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPL 311
                         330
                  ....*....|
gi 2468518855 315 SIISLILALA 324
Cdd:PRK06076  312 SLVNLLLTAA 321
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
5-324 1.25e-68

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 217.31  E-value: 1.25e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   5 IIFLIQALIypGLLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLIVISI 84
Cdd:COG1005     9 LITLIKALV--ILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  85 VIGALITVFSVTPIAIKPLYADFDI--IILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISMLVPVI 162
Cdd:COG1005    87 AFIPALLAFAVIPFGPGLVLADLNVglLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 163 IASryfnagySLYPTSLVSPQ---LWTInplktLSMVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLAL 239
Cdd:COG1005   167 LAG-------SLNLSEIVEAQaggLWFI-----LPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFAL 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 240 GFFAKFAEKIVYPLIYVLLFLGG-AWPFNG---DWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLS 315
Cdd:COG1005   235 FFLAEYANMFLVSALATTLFLGGwLGPFPIlplGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLS 314

                  ....*....
gi 2468518855 316 IISLILALA 324
Cdd:COG1005   315 LVNLVLTAA 323
NADHdh pfam00146
NADH dehydrogenase;
17-323 5.62e-66

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 209.64  E-value: 5.62e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  17 LLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLIVISIVIGALITVFSVT 96
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  97 PIAIKPLYADFDI--IILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISMLVPVIIASryfnagySL 174
Cdd:pfam00146  86 PFGPGLVLADLNVgiLYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG-------SL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 175 YPTSLVSPQLWTINPlktLSMVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLALGFFAKFAEKIVYPLI 254
Cdd:pfam00146 159 SLSEIVEAQAGGWFI---PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSAL 235
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 255 YVLLFLGG-AWPFNgdwILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLSIISLILAL 323
Cdd:pfam00146 236 AVTLFLGGwLGPFP---LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-324 4.92e-38

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 137.63  E-value: 4.92e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQALIYPGLLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLI 80
Cdd:PRK06076    4 FGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  81 VISIVIGALITVFSVTPIAIKPLYADFDI--IILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISML 158
Cdd:PRK06076   84 APVIAFIPAFLAWAVIPFGPELVIADLNVgiLYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 159 VPVIIASryfnagySLYPTSLVSPQ--LWTINPLkTLSMVLASIAGFLGLMSIlmikPFDTPEAESELYWGIFTELGGPR 236
Cdd:PRK06076  164 AVVLLAG-------SLNLSDIVEAQflSWNIIPQ-PPAFVVFFIAAVAETNRH----PFDLPEAESELVAGYHTEYSGMK 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 237 LALGFFAKFAEKIVYPLIYVLLFLGG--AWPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPL 314
Cdd:PRK06076  232 FGLFFLGEYINMILVSALITTLFLGGwlPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPL 311
                         330
                  ....*....|
gi 2468518855 315 SIISLILALA 324
Cdd:PRK06076  312 SLVNLLLTAA 321
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
5-323 4.17e-33

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 124.14  E-value: 4.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   5 IIFLIQALIYPGLLFTIAFIIFTqwLSRKITARIQYRRGPvyvgpaGLLQPLADLLKLvMKKDLVnkYSLRASPL--IVI 82
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLG--IIRKVKARLQGRRGP------PILQPYYDLLKL-LRKETV--VPETASWLfrAAP 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  83 SIVIGALITVFSVTPIAIKPLYADF--DIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISMLVP 160
Cdd:COG0650    70 YVALAAMLLAALLVPVLTTGPPLSFsgDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFAL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 161 VIIASryfnagySLYPTSLVSPQLWTINPLKTLSMVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLALG 240
Cdd:COG0650   150 ALLAG-------STSLSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALL 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 241 FFAKFAEKIVYPLIYVLLFLGgaWPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKyLYPLSIISLI 320
Cdd:COG0650   223 ELAAALKLFVLLSLFVNLFLP--WGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWT-AFLLALLALL 299

                  ...
gi 2468518855 321 LAL 323
Cdd:COG0650   300 LAV 302
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
2-324 2.33e-24

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 100.82  E-value: 2.33e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   2 MDPIIFLIQALIY--PGLLfTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDL----VNKYSLR 75
Cdd:MTH00040    1 MSVILFLINLLSFivPVLL-AVAFLTL---VERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLkpsnASPYLFF 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  76 ASPLIVISIVIgaliTVFSVTPIAIKPLYADFDIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSsepaYAI 155
Cdd:MTH00040   77 FSPVLFLFLAL----LLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTIS----YEI 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 156 SM---LVPVIIasryFNAGYSLYPTSLVSPQLWTINPLKTLSMVLasiagFLGLMSILMIKPFDTPEAESELYWGIFTEL 232
Cdd:MTH00040  149 SLgliLLSLVI----FSGSFSLSSISNSQNGSWLLFPCLPLFYIW-----FISTLAETNRAPFDLTEGESELVSGYNVEY 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 233 GGPRLALGFFAKFAEKIVYPLIYVLLFLGGAWPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLY 312
Cdd:MTH00040  220 AGGPFALFFIAEYANIIFMNLLSVILFLGGGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYL 299
                         330
                  ....*....|..
gi 2468518855 313 PLSIISLILALA 324
Cdd:MTH00040  300 PLSIGLLIFYLL 311
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
1-324 6.29e-19

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 85.83  E-value: 6.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQALIY--PGLLfTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSlraSP 78
Cdd:MTH00071    1 MMTLISLIINPLLYiiPVLL-AVAFLTL---VERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTS---SQ 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  79 LIVISIVIGALITVFSV-TPIAIKPLYADFDIIILLYllllipFGLAYLAV--------AHPNPYTVIGAGRYIALLFSS 149
Cdd:MTH00071   74 ILFILMPTMALTLALIIwTPLPMPNNLSNLNLGILFI------LALSSLAVysilgsgwASNSKYALIGALRAVAQTISY 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 150 EPAYAISMLVPVIIAsryfnAGYSLYPTSLVSPQLWTINPLKTLSMVLasiagFLGLMSILMIKPFDTPEAESELYWGIF 229
Cdd:MTH00071  148 EVTLGLILLCLILLT-----GGFSLMNFNTTQEFMWLIIPAWPMAAMW-----FISTLAETNRAPFDLTEGESELVSGFN 217
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 230 TELGGPRLALGFFAKFAEKIVYPLIYVLLFLGGAWPFNGDWiLGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWK 309
Cdd:MTH00071  218 VEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQPE-LSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWK 296
                         330
                  ....*....|....*
gi 2468518855 310 YLYPLSIISLILALA 324
Cdd:MTH00071  297 NFLPITLAMTIFHIS 311
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
1-326 6.19e-16

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 77.00  E-value: 6.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQALiypGLLFTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKD----LVNKYSLRA 76
Cdd:MTH00225    1 MSFLLKFLIMLI---CLLLSVAFYTL---LERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQtkpqLSNKLPYYI 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  77 SPLIVISIVIGalitVFSVTPIAIKPLYADFDIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAIS 156
Cdd:MTH00225   75 APILSLILSLI----LWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALI 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 157 MLVPVIIASryfnaGYSLYPTSLVSPQLWTInplktLSMVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPR 236
Cdd:MTH00225  151 LLSIVFLVL-----TYNLFDFSYNQKYFWFM-----FVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGG 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 237 LALGFFAKFAEKIVYPLIYVLLFLGGawpfnGDWILGTLVILVKTTIVFAVLTiIDASLPRYKPEQAVRYLWKYLYPLSI 316
Cdd:MTH00225  221 FALIFMAEYGSILFMSMLTSILFFGG-----FFVTIDLFLILKIMLLAFWFIW-VRGVLPRMRYDKLMSLTWKSFLPLSL 294
                         330
                  ....*....|
gi 2468518855 317 ISLILALAPW 326
Cdd:MTH00225  295 AYLFMVLIIL 304
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
12-326 9.86e-16

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 76.59  E-value: 9.86e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  12 LIYPGLLfTIAFIIFTQwlsRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLvnkYSLRASPLIVISIVIGALIT 91
Cdd:MTH00104    9 LIIPILL-AVAFLTLVE---RKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPL---RPLTSSTTMFIIAPILALTL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  92 VFSV-TPIAIKPLYADFDIIILlyllllipFGLAY--LAV--------AHPNPYTVIGAGRYIALLFSSEPAYAISMLVP 160
Cdd:MTH00104   82 ALTMwIPLPMPYPLINMNLGVL--------FILAMssLAVysilwsgwASNSKYALIGALRAVAQTISYEVTLAIILLSV 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 161 VIIasryfNAGYSLYPTSLVSPQLWTINPLKTLSMVLasiagFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLALG 240
Cdd:MTH00104  154 LLM-----NGSFTLSTLITTQEHLWLIFPSWPLAMMW-----FISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALF 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 241 FFAKFAEKIVYPLIYVLLFLGGAWPFNGDWiLGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLSiisli 320
Cdd:MTH00104  224 FMAEYANIIMMNALTTILFLGAFHNPYMPE-LYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLT----- 297

                  ....*.
gi 2468518855 321 LALAPW 326
Cdd:MTH00104  298 LALCMW 303
ndhA CHL00032
NADH dehydrogenase subunit 1
29-321 1.55e-15

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 76.53  E-value: 1.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  29 WLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLV----NKYSLRASPLI-VISIVIGalitvFSVTPIAIKPL 103
Cdd:CHL00032   49 WLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLpsrgDIRLFSIGPSIaVISILLS-----YLVIPFGYHLV 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 104 YADFDIIILL--YLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSsepaYAISMLVPVIIASRYFNagySLYPTSLVS 181
Cdd:CHL00032  124 LADLSIGVFLwiAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSIS----YEIPLTLCVLSISLLSN---SLSTVDIVE 196
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 182 PQ----LWTIN----PLKTLSMVLASIAGFLGLmsilmikPFDTPEAESELYWGIFTELGGPRLALGFFAKFAEKIVYPL 253
Cdd:CHL00032  197 AQskygFWGWNlwrqPIGFIVFLISSLAECERL-------PFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSL 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 254 IYVLLFLGGaWPFNGDWI------------------LGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLS 315
Cdd:CHL00032  270 FVTVLYLGG-WNLSIPYIfipelfeinktggvfgttIGIFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPIS 348

                  ....*.
gi 2468518855 316 IISLIL 321
Cdd:CHL00032  349 LGNLLL 354
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
1-326 9.37e-15

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 73.78  E-value: 9.37e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQALIY--PgLLFTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLvnkYSLRASP 78
Cdd:MTH00111    1 MPTLLLNLINPLLYiiP-ILIAVAFLTL---LERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPI---RPSTSSP 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  79 LIVISIVIGALITVFSV-TPIAIKPLYADFDIIILlyllllipFGLAY--LAV--------AHPNPYTVIGAGRYIALLF 147
Cdd:MTH00111   74 ILFTLTPILALLLALTIwTPLPMPFPLADLNLGLL--------FLLAMssMAVysilwsgwASNSKYALMGALRAVAQTI 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 148 SSEPAYAISMLVPVIIAsryfnAGYSLYPTSLVSPQLWTINPLKTLSMVLasiagFLGLMSILMIKPFDTPEAESELYWG 227
Cdd:MTH00111  146 SYEVTLGIILLSLILLS-----GGYTLQTLATTQEPLWLIFSSWPLAMMW-----YISTLAETNRAPFDLTEGESELVSG 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 228 IFTELGGPRLALGFFAKFAEKIVYPLIYVLLFLGGAwPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYL 307
Cdd:MTH00111  216 FNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPS-TLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLL 294
                         330
                  ....*....|....*....
gi 2468518855 308 WKYLYPLSiisliLALAPW 326
Cdd:MTH00111  295 WKQFLPLT-----LALCLW 308
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
2-321 2.29e-14

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 72.45  E-value: 2.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   2 MDPIIFLIQALIYPgLLFTIAFIIFTQwlsRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKyslRASPLIV 81
Cdd:MTH00054    1 MGIIIIKILAILVP-LLISIAYLTLAE---RKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPN---HANIFIY 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  82 ISIVIGALITVF---SVTPIAIKPLYADFDIiillyllllipfGLAYL-AVAHPNPYTVIGAG-----RYIALLFSSEPA 152
Cdd:MTH00054   74 IMAPILSLTLAFiawGVIPYGEGVVLSDLGI------------GILYLfAVSSISVYAVLMSGwssnsKYAFLGAIRAAA 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 153 YAISMLVPV--IIASRYFNAGySLYPTSLVSPQ--LWTINPLktlsmVLASIAGFLGLMSILMIKPFDTPEAESELYWGI 228
Cdd:MTH00054  142 QMISYEVSIglIIISVVLCVG-SLNLTEIVLAQknIWFIFPL-----FPAAIMFFVSALAETNRVPFDLTEGESELVSGF 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 229 FTELGGPRLALGFFAKFAEKIVYPLIYVLLFLGGAWPFNG--DWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRY 306
Cdd:MTH00054  216 NVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGptSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMAL 295
                         330
                  ....*....|....*
gi 2468518855 307 LWKYLYPLSIISLIL 321
Cdd:MTH00054  296 LWKSYLPLSLAFVVL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
12-321 2.91e-14

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 72.36  E-value: 2.91e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  12 LIYPGLLFTIAFIIFTQwlsRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLV----NKYSLRASPLIVISIVIG 87
Cdd:MTH00029   15 IIFVPLLLSVAYLTLAE---RKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIpsqaNKFLYYIAPIISFTLAIL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  88 ALITVFSVTPIAIKPLyaDFDIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAIsMLVPVIIASRY 167
Cdd:MTH00029   92 AWAIVTMDQGVFLSDL--DVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGL-IIISVILCVGS 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 168 FNagysLYPTSLVSPQLWTINPLktlsmVLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLALGFFAKFAE 247
Cdd:MTH00029  169 LN----ISEIVISQRSVWLIIPL-----FPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSN 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 248 KIVYPLIYVLLFLGGaW--PFNGDW--------------ILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYL 311
Cdd:MTH00029  240 IILMSCMMTIFFLGG-WlsPLDGIPtppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTY 318
                         330
                  ....*....|
gi 2468518855 312 YPLSIISLIL 321
Cdd:MTH00029  319 LPLSLGLVIL 328
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-324 3.43e-14

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 71.95  E-value: 3.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLI---QALIYPGLLfTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSlraS 77
Cdd:MTH00134    1 MLSTLITHIinpLAYIVPVLL-AVAFLTL---LERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTS---S 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  78 PLIVISIVIGALITVFSV-TPIAIKPLYADFDIIILLYllllipFGLAYLAV--------AHPNPYTVIGAGRYIALLFS 148
Cdd:MTH00134   74 PFLFLATPMLALTLALTLwAPMPMPYPVTDLNLGILFI------LALSSLAVysilgsgwASNSKYALIGALRAVAQTIS 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 149 SEPAYAISMLVPVIiasryFNAGYSLYPTSLVSPQLWTINPLKTLSMVLasiagFLGLMSILMIKPFDTPEAESELYWGI 228
Cdd:MTH00134  148 YEVSLGLILLSVII-----FTGGFTLQTFNTAQESIWLLLPAWPLAAMW-----YISTLAETNRAPFDLTEGESELVSGF 217
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 229 FTELGGPRLALGFFAKFAEKIVYPLIYVLLFLgGAWPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLW 308
Cdd:MTH00134  218 NVEYAGGPFALFFLAEYANILLMNTLSAILFL-GASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVW 296
                         330
                  ....*....|....*.
gi 2468518855 309 KYLYPLSIISLILALA 324
Cdd:MTH00134  297 KNFLPLTLALVIWHLA 312
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
5-321 3.84e-14

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 72.07  E-value: 3.84e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   5 IIFLIQALIYPgLLFTIAFIIFTQwlsRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLV----NKYSLRASPLI 80
Cdd:MTH00216    8 YLIKILIIIVP-LLIAVAYLTLAE---RKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIphhaNLFVYIVAPVL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  81 VISIvigALItVFSVTPIAIKPLYADFDIIILLYLLLLIPFGLAYLAV--AHPNPYTVIGAGRYIALLFSSEpayaisML 158
Cdd:MTH00216   84 SFTL---ALI-VWGVIPYERGVLISDFKIGILYILAISSISVYAILMSgwGSNSKYAFLGAIRAAAQMISYE------VS 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 159 VPVIIASRYFNAGySLYPTSLVSPQ---LWTINPLKTLSMVLasiagFLGLMSILMIKPFDTPEAESELYWGIFTELGGP 235
Cdd:MTH00216  154 IGLIIISVLLCVG-SLSITEIVLAQnngIWFFFPLFPVAIMF-----FASALAETNRAPFDLTEGESELVSGYNVEYASM 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 236 RLALGFFAKFAEKIVYPLIYVLLFLGGAWPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLS 315
Cdd:MTH00216  228 SFALFFLAEYAHIILMSCLTTILFLGGWLSPIKYFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLS 307

                  ....*.
gi 2468518855 316 IISLIL 321
Cdd:MTH00216  308 LGVVIF 313
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
1-324 4.43e-14

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 71.70  E-value: 4.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQalIYPGLLfTIAFIIFTQwlsRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKdlVNKYSLRASPLI 80
Cdd:MTH00195    2 MISVIHFLIQ--IVPVLL-AVAFFTLLE---RKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKE--PVKPSTSSLWLF 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  81 VISIVIGALITVFSVTPI--AIKPLYADFDIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISML 158
Cdd:MTH00195   74 FFAPVLALALALILWVPIpsPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIIL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 159 VPVIIAsryfnAGYSLYPTSLVSPQLWTINPLKTLSMVLAsiagfLGLMSILMIKPFDTPEAESELYWGIFTELGGPRLA 238
Cdd:MTH00195  154 CPICLA-----GSFDFTIMVISQGFSWVILLCPPISFMWY-----VSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFA 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 239 LGFFAKFAEKIVYPLIYVLLFLGGAwpfngdwilGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLsIIS 318
Cdd:MTH00195  224 LIFMAEYSNIIFMSVLTTILFLGGG---------GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPL-ILS 293

                  ....*.
gi 2468518855 319 LILALA 324
Cdd:MTH00195  294 LLIPLA 299
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
1-321 6.17e-13

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 68.40  E-value: 6.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQALIypGLLFTIAFIIFTQwlsRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKK----DLVNKYSLRA 76
Cdd:MTH00218    1 MLLSLINLLLYIL--PVLLAVAFLTLLE---RKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEpirpSTSSPFLFLL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  77 SPLIVISIvigALITVFSVtPIAIKPLYADFDIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAIS 156
Cdd:MTH00218   76 APILALTL---ALLLWMPL-PLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLI 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 157 MLVPVIiasryFNAGYSLYPTSLVSPQLWTINPLKTLSMVLasiagFLGLMSILMIKPFDTPEAESELYWGIFTELGGPR 236
Cdd:MTH00218  152 ILSLII-----LTGGFSLEGFNLTQETIWLLIPEWPLALMW-----FISTLAETNRAPFDLTEGESELVSGFNVEYSGGP 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 237 LALGFFAKFAEKIVYPLIYVLLFLGgawpfngdWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLSI 316
Cdd:MTH00218  222 FALFFLAEYMNILFMNTLSVILFLG--------TSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSL 293

                  ....*
gi 2468518855 317 ISLIL 321
Cdd:MTH00218  294 ALLLL 298
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
12-321 2.29e-12

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 66.43  E-value: 2.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  12 LIYPGLLFTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKK----DLVNKYSLRASPLI--VISIV 85
Cdd:MTH00143    9 FTYLCVLLAVAFFTL---LERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEfvkpTMSNKFPFFLAPCLslILALL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  86 IGALITVFSVTPiaikplYADFDiiillyllllipfGLAYLAVAHPNPYTVIGAG-------------RYIALLFSSEPA 152
Cdd:MTH00143   86 LWQLYPSYFSSS------YFGWG-------------LLFFLCVSSLNVYGVLLAGwssnskyallgavRAVAQTISYEVS 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 153 YAISMLVPVIIASryfnagyslyptslvspqlwtinplkTLSMVLASIAGFLGLMSILMI----------------KPFD 216
Cdd:MTH00143  147 MSLILLFPLFLSG--------------------------SFSFIEISESQFSVWLGFLMFpvflmwfvsclaetnrAPFD 200
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 217 TPEAESELYWGIFTELGGPRLALGFFAKFAEKIVYPLIYVLLFLGG--AWPFNGDWILGTLVILVKTTIVFavltiIDAS 294
Cdd:MTH00143  201 FAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGssVLFLLGGVVFMFKVLFFAFLFIW-----VRAS 275
                         330       340
                  ....*....|....*....|....*..
gi 2468518855 295 LPRYKPEQAVRYLWKYLYPLSIISLIL 321
Cdd:MTH00143  276 YPRFRYDLLMMLCWKSFLPFSLSILVL 302
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
4-323 1.59e-11

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 64.03  E-value: 1.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   4 PIIFLIQALI-YPGLLFTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLIVI 82
Cdd:MTH00010    2 NISFFISILLsYVMALLAMAFYTL---LERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  83 SIVIGALITVFSVTPIAIKPLYADFDIiillyllllipfgLAYLAVAHPNPYTVIGAG-------------RYIALLFSS 149
Cdd:MTH00010   79 MMSLILALLLWSLYPHKHPSFFLKFSI-------------LLFLCVSSMNVYTTLGAGwtsnskyallgalRSVAQTISY 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 150 EPAYAISMLVPVIIASRYfnaGYSLYPTSLVSPQLWTINPLktlsmvlaSIAGFLGLMSILMIKPFDTPEAESELYWGIF 229
Cdd:MTH00010  146 EVSMSLILLSALLILQTF---SFSKIIMSQYSWILLMIIPL--------TVSWFITNLAETNRTPFDFAEGESELVSGFN 214
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 230 TELGGPRLALGFFAKFAEKIVYPLIYVLLFLggawPFNGDWILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWK 309
Cdd:MTH00010  215 VEYSSGLFALIFMAEYANILIMSLFTSVFFT----SFIPSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWK 290
                         330
                  ....*....|....
gi 2468518855 310 YLYPLSIISLILAL 323
Cdd:MTH00010  291 SFLPMSLTSLMISI 304
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
16-321 2.22e-10

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 60.32  E-value: 2.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  16 GLLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDlVNKYSLRA--SPLIVISIVIGALITVF 93
Cdd:MTH00058   10 GLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFK-VYGFQSRSwfSLFGVFLLVLLVVFYCF 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  94 sVTPIAIKPLYADFDIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRyiaLLFSSEPAYAISMLVPVIIASRYFnaGYS 173
Cdd:MTH00058   89 -IYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIR---SAFGSVSFEACFMCIVIFCGLCYG--SYS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 174 LYPTSLVSPQLWTINPlktlsmvLASIAGFLGLMSILMIKPFDTPEAESELYWGIFTELGGprlaLGFFAKFAEKivYPL 253
Cdd:MTH00058  163 LVDFYYSGWLSVLLFP-------LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSG----IYFTCLFACE--YLI 229
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2468518855 254 IYVLLFLGGAWPFNGdwilGTLVILVKTTIVFAVLTiiDASLPRYKPEQAVRYLWKYLYPLSIISLIL 321
Cdd:MTH00058  230 IFIFSWLGSVLFFGG----GFVSIMLLFHLLFFMWA--RATLPRVRYDYFVNFFWEYCLVLLILSLFV 291
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
1-321 6.03e-08

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 53.23  E-value: 6.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855   1 MMDPIIFLIQALIypGLLFTIAFIIFtqwLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLraSPLI 80
Cdd:MTH00193    1 LMMMLINFLLLII--CVLVSVAFLTL---LERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSN--YLLY 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  81 VISIVIGALITVF--SVTPIAIKPLYADFDIIILLYLLLLIPFGLAYLAVAHPNPYTVIGAGRYIALLFSSEPAYAISML 158
Cdd:MTH00193   74 YFSPVFSLFLSLLiwLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 159 VPVIIASryfnaGYSLYPTSLVSPQLWtinplktlsMVLASIAGFLGLMSILMIK----PFDTPEAESELYWGIFTELGG 234
Cdd:MTH00193  154 SFIFLIG-----SFNLLDFMNYQKYIW---------FIFFSFPLFLIWFVSCLAEtnrtPFDFAEGESELVSGFNVEYSS 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 235 PRLALGFFAKFAEKIVYPLIYVLLFLGGawpfngdwILGTLVILVKTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPL 314
Cdd:MTH00193  220 GGFALIFLAEYSSILFMSMLFVLMFLGG--------DLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPL 291

                  ....*..
gi 2468518855 315 SIISLIL 321
Cdd:MTH00193  292 SLNYLLF 298
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
17-321 3.99e-03

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 38.34  E-value: 3.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  17 LLFTIAFIIFTQWLSRKITARIQYRRGPVYVGPAGLLQPLADLLKLVMKKDLVNKYSLRASPLIV--ISIVIGALITVfs 94
Cdd:MTH00090    6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVpgVSFVVMYLEWF-- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855  95 vtpiaIKPLYADFDIIILLYLLLLIPFGLA-----YLAVAHPNPYTVIGAGRYIALLFSSEPAYAISMLVPVI-IASRYF 168
Cdd:MTH00090   84 -----VLPYFFDFLSFEYSLLFFLCLIGFSvyttlISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLhNNSFSF 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468518855 169 NAGYSLYPTSLVSPqlwtinplkTLSMVLASiagflglmsiLMIKPFDTPEAESELYWGIFTELGGPRLALGFFAKFAEK 248
Cdd:MTH00090  159 VSSFSLSLFVIYLP---------FLIMIIAE----------LNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSL 219
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2468518855 249 IVYPLIYVLLFLGGAWPFngdwilgtlvilvkTTIVFAVLTIIDASLPRYKPEQAVRYLWKYLYPLSIISLIL 321
Cdd:MTH00090  220 IFFSVLTSVLFFKFSFLM--------------LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGF 278
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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