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Conserved domains on  [gi|167382317|ref|XP_001736051|]
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60S ribosomal protein L21 [Entamoeba dispar SAW760]

Protein Classification

60S ribosomal protein L21( domain architecture ID 11488226)

60S ribosomal protein L21 which is a component of the eukaryotic 60S large ribosomal subunit (LSU), similar to Homo sapiens 60S ribosomal protein L21

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00189 PTZ00189
60S ribosomal protein L21; Provisional
1-166 7.20e-84

60S ribosomal protein L21; Provisional


:

Pssm-ID: 240309  Cd Length: 160  Bit Score: 243.75  E-value: 7.20e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317   1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKV 80
Cdd:PTZ00189   1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317  81 NNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNiqlKKEGKellPLPAKRLPKQPRPAELIKGTDIKFTTVAPL 160
Cdd:PTZ00189  81 RGRIVRKRIHVRIEHVRKSRCREDFLKRVAANDAIKAEA---KKKGE---LPSTKRQPAQPRPAGFVKPKPTEVVTVRPL 154

                 ....*.
gi 167382317 161 KFEELY 166
Cdd:PTZ00189 155 PFVEIY 160
 
Name Accession Description Interval E-value
PTZ00189 PTZ00189
60S ribosomal protein L21; Provisional
1-166 7.20e-84

60S ribosomal protein L21; Provisional


Pssm-ID: 240309  Cd Length: 160  Bit Score: 243.75  E-value: 7.20e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317   1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKV 80
Cdd:PTZ00189   1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317  81 NNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNiqlKKEGKellPLPAKRLPKQPRPAELIKGTDIKFTTVAPL 160
Cdd:PTZ00189  81 RGRIVRKRIHVRIEHVRKSRCREDFLKRVAANDAIKAEA---KKKGE---LPSTKRQPAQPRPAGFVKPKPTEVVTVRPL 154

                 ....*.
gi 167382317 161 KFEELY 166
Cdd:PTZ00189 155 PFVEIY 160
Ribosomal_L21e pfam01157
Ribosomal protein L21e;
1-99 1.78e-46

Ribosomal protein L21e;


Pssm-ID: 460087  Cd Length: 100  Bit Score: 146.86  E-value: 1.78e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317    1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKV 80
Cdd:pfam01157   1 MPHSKGYRRGTRYKFSKDFRKHGVPPLSTYLQTYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVYNVGKRGVGYIVNKQV 80
                          90
                  ....*....|....*....
gi 167382317   81 NNRIVVKRLHISPEHIRPS 99
Cdd:pfam01157  81 GGKILEKRINVRPEHLKPS 99
RPL21A COG2139
Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-100 2.27e-16

Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L21E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441742  Cd Length: 96  Bit Score: 70.19  E-value: 2.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317   1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVmvnkKV 80
Cdd:COG2139    1 MKRSHGFRSKTRKKLSKDPRERGTPPLSRLLQEFEEGDKVHIKIDPSVHKGMPHPRFHGKTGTVVGKRGRAYKV----EV 76
                         90       100
                 ....*....|....*....|
gi 167382317  81 NNRIVVKRLHISPEHIRPSG 100
Cdd:COG2139   77 KDGGKEKTLIVRPEHLKPQK 96
 
Name Accession Description Interval E-value
PTZ00189 PTZ00189
60S ribosomal protein L21; Provisional
1-166 7.20e-84

60S ribosomal protein L21; Provisional


Pssm-ID: 240309  Cd Length: 160  Bit Score: 243.75  E-value: 7.20e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317   1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKV 80
Cdd:PTZ00189   1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317  81 NNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNiqlKKEGKellPLPAKRLPKQPRPAELIKGTDIKFTTVAPL 160
Cdd:PTZ00189  81 RGRIVRKRIHVRIEHVRKSRCREDFLKRVAANDAIKAEA---KKKGE---LPSTKRQPAQPRPAGFVKPKPTEVVTVRPL 154

                 ....*.
gi 167382317 161 KFEELY 166
Cdd:PTZ00189 155 PFVEIY 160
PLN00190 PLN00190
60S ribosomal protein L21; Provisional
1-165 9.72e-52

60S ribosomal protein L21; Provisional


Pssm-ID: 177784  Cd Length: 158  Bit Score: 162.20  E-value: 9.72e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317   1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKV 80
Cdd:PLN00190   1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKRAVGVEVNKQV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317  81 NNRIVVKRLHISPEHIRPSGCQKDFLERkaavaaiRKQNIQLKKEGK-ELLPLPAKRLPKQPRPAELIKGTDIKftTVAP 159
Cdd:PLN00190  81 GNRIIRKRIHVRVEHVQPSRCREEFLLR-------KKSNDEAKAEAKaKGEKISTKRQPKGPKPGFMVEGATLE--TVTP 151

                 ....*.
gi 167382317 160 LKFEEL 165
Cdd:PLN00190 152 IPYDVV 157
Ribosomal_L21e pfam01157
Ribosomal protein L21e;
1-99 1.78e-46

Ribosomal protein L21e;


Pssm-ID: 460087  Cd Length: 100  Bit Score: 146.86  E-value: 1.78e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317    1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKV 80
Cdd:pfam01157   1 MPHSKGYRRGTRYKFSKDFRKHGVPPLSTYLQTYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVYNVGKRGVGYIVNKQV 80
                          90
                  ....*....|....*....
gi 167382317   81 NNRIVVKRLHISPEHIRPS 99
Cdd:pfam01157  81 GGKILEKRINVRPEHLKPS 99
RPL21A COG2139
Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-100 2.27e-16

Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L21E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441742  Cd Length: 96  Bit Score: 70.19  E-value: 2.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317   1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVmvnkKV 80
Cdd:COG2139    1 MKRSHGFRSKTRKKLSKDPRERGTPPLSRLLQEFEEGDKVHIKIDPSVHKGMPHPRFHGKTGTVVGKRGRAYKV----EV 76
                         90       100
                 ....*....|....*....|
gi 167382317  81 NNRIVVKRLHISPEHIRPSG 100
Cdd:COG2139   77 KDGGKEKTLIVRPEHLKPQK 96
PRK04306 PRK04306
50S ribosomal protein L21e; Reviewed
1-98 2.31e-15

50S ribosomal protein L21e; Reviewed


Pssm-ID: 235275  Cd Length: 98  Bit Score: 67.55  E-value: 2.31e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167382317   1 MPLSNGRNRRTRKLFKRPFRGHGISNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVwnvnphaIGV-----M 75
Cdd:PRK04306   2 MKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTV-------VGKrgrayI 74
                         90       100
                 ....*....|....*....|...
gi 167382317  76 VNKKVNNriVVKRLHISPEHIRP 98
Cdd:PRK04306  75 VEVKDGG--KEKTLIVRPEHLRP 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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