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Conserved domains on  [gi|564364315|ref|XP_006243367|]
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sorting nexin-22 isoform X3 [Rattus norvegicus]

Protein Classification

PX domain-containing protein; PX and BAR domain-containing protein( domain architecture ID 10160756)

PX (Phox Homology) domain-containing protein may bind phosphoinositides and may function in targeting proteins to membranes| PX (Phox homology) and BAR (Bin/Amphiphysin/Rvs) domain-containing protein similar to Saccoglossus kowalevskii sorting nexin 2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PX_SNX22 cd06880
The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a ...
2-116 5.33e-55

The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.


:

Pssm-ID: 132790  Cd Length: 110  Bit Score: 169.76  E-value: 5.33e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315   2 LEVHIPSVGPEAEGPrqspEKGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYKVPDFPSKRLPNWRTRGLEQRRQ 81
Cdd:cd06880    1 IEVSIPSYRLEVDES----EKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIKTPDFPPKRVRNWNPKVLEQRRQ 76
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 564364315  82 GLETYIQGVLYLNQdVPKELLEFLRLRHFPTDSKA 116
Cdd:cd06880   77 GLEAYLQGLLKINE-LPKQLLDFLGVRHFPSLPKS 110
 
Name Accession Description Interval E-value
PX_SNX22 cd06880
The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a ...
2-116 5.33e-55

The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.


Pssm-ID: 132790  Cd Length: 110  Bit Score: 169.76  E-value: 5.33e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315   2 LEVHIPSVGPEAEGPrqspEKGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYKVPDFPSKRLPNWRTRGLEQRRQ 81
Cdd:cd06880    1 IEVSIPSYRLEVDES----EKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIKTPDFPPKRVRNWNPKVLEQRRQ 76
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 564364315  82 GLETYIQGVLYLNQdVPKELLEFLRLRHFPTDSKA 116
Cdd:cd06880   77 GLEAYLQGLLKINE-LPKQLLDFLGVRHFPSLPKS 110
PX smart00312
PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function ...
15-105 3.59e-12

PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.


Pssm-ID: 214610  Cd Length: 105  Bit Score: 59.66  E-value: 3.59e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315    15 GPRQSPEKGHMVFQVEVLYSG--RRHTVPRRYSEFHALHKRIKKRY---KVPDFPSK----RLPNWRTRGLEQRRQGLET 85
Cdd:smart00312   3 EPEKIGDGKHYYYVIEIETKTglEEWTVSRRYSDFLELHSKLKKHFprsILPPLPGKklfgRLNNFSEEFIEKRRRGLEK 82
                           90       100
                   ....*....|....*....|..
gi 564364315    86 YIQGVLYLNQDVP--KELLEFL 105
Cdd:smart00312  83 YLQSLLNHPELINhsEVVLEFL 104
PX pfam00787
PX domain; PX domains bind to phosphoinositides.
30-91 2.36e-11

PX domain; PX domains bind to phosphoinositides.


Pssm-ID: 459940  Cd Length: 84  Bit Score: 57.25  E-value: 2.36e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364315   30 EVLYSGRRHTVPRRYSEFHALHKRIKKRYK---VPDFPSKRLP-NWRTRGLEQRRQGLETYIQGVL 91
Cdd:pfam00787   1 LPTFSLEEWSVRRRYSDFVELHKKLLRKFPsviIPPLPPKRWLgRYNEEFIEKRRKGLEQYLQRLL 66
COG5391 COG5391
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ...
34-99 3.66e-06

Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];


Pssm-ID: 227680 [Multi-domain]  Cd Length: 524  Bit Score: 46.33  E-value: 3.66e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564364315  34 SGRRHTVPRRYSEFHALHKRIKKRYK---VPDFPSKRL------PNWRTRGLEQRRQGLETYIQGVLyLNQDVPK 99
Cdd:COG5391  169 ESRPLVVRRRYSDFESLHSILIKLLPlcaIPPLPSKKSnseyygDRFSDEFIEERRQSLQNFLRRVS-THPLLSN 242
 
Name Accession Description Interval E-value
PX_SNX22 cd06880
The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a ...
2-116 5.33e-55

The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.


Pssm-ID: 132790  Cd Length: 110  Bit Score: 169.76  E-value: 5.33e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315   2 LEVHIPSVGPEAEGPrqspEKGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYKVPDFPSKRLPNWRTRGLEQRRQ 81
Cdd:cd06880    1 IEVSIPSYRLEVDES----EKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIKTPDFPPKRVRNWNPKVLEQRRQ 76
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 564364315  82 GLETYIQGVLYLNQdVPKELLEFLRLRHFPTDSKA 116
Cdd:cd06880   77 GLEAYLQGLLKINE-LPKQLLDFLGVRHFPSLPKS 110
PX_domain cd06093
The Phox Homology domain, a phosphoinositide binding module; The PX domain is a ...
17-107 2.81e-18

The Phox Homology domain, a phosphoinositide binding module; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.


Pssm-ID: 132768 [Multi-domain]  Cd Length: 106  Bit Score: 75.86  E-value: 2.81e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  17 RQSPEKGHMVFQVEVLYSG-RRHTVPRRYSEFHALHKRIKKRYK---VPDFPSKRLP-NWRTRGLEQRRQGLETYIQGVL 91
Cdd:cd06093   10 VKDGGKKYVVYIIEVTTQGgEEWTVYRRYSDFEELHEKLKKKFPgviLPPLPPKKLFgNLDPEFIEERRKQLEQYLQSLL 89
                         90
                 ....*....|....*..
gi 564364315  92 YLNQDV-PKELLEFLRL 107
Cdd:cd06093   90 NHPELRnSEELKEFLEL 106
PX_IRAS cd06875
The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor ...
16-110 1.63e-12

The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected; The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132785  Cd Length: 116  Bit Score: 61.14  E-value: 1.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  16 PRQSPEKGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYKV-----PdfPSKRLPNWRTRGLEQRRQGLETYIQGV 90
Cdd:cd06875    9 PSAETVEGYTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEHKVdkdllP--PKKLIGNKSPSFVEKRRKELEIYLQTL 86
                         90       100
                 ....*....|....*....|.
gi 564364315  91 L-YLNQDVPKELLEFLRLRHF 110
Cdd:cd06875   87 LsFFQKTMPRELAHFLDFHKY 107
PX smart00312
PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function ...
15-105 3.59e-12

PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.


Pssm-ID: 214610  Cd Length: 105  Bit Score: 59.66  E-value: 3.59e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315    15 GPRQSPEKGHMVFQVEVLYSG--RRHTVPRRYSEFHALHKRIKKRY---KVPDFPSK----RLPNWRTRGLEQRRQGLET 85
Cdd:smart00312   3 EPEKIGDGKHYYYVIEIETKTglEEWTVSRRYSDFLELHSKLKKHFprsILPPLPGKklfgRLNNFSEEFIEKRRRGLEK 82
                           90       100
                   ....*....|....*....|..
gi 564364315    86 YIQGVLYLNQDVP--KELLEFL 105
Cdd:smart00312  83 YLQSLLNHPELINhsEVVLEFL 104
PX_SNARE cd06897
The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi; The PX domain ...
2-108 5.22e-12

The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.


Pssm-ID: 132807  Cd Length: 108  Bit Score: 59.59  E-value: 5.22e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315   2 LEVHIPSVgpeaegprQSPEKGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYKVP---DFPSKRLPNWRTRG--- 75
Cdd:cd06897    1 LEISIPTT--------SVSPKPYTVYNIQVRLPLRSYTVSRRYSEFVALHKQLESEVGIEppyPLPPKSWFLSTSSNpkl 72
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 564364315  76 LEQRRQGLETYIQGvLYLNQDVP----KELLEFLRLR 108
Cdd:cd06897   73 VEERRVGLEAFLRA-LLNDEDSRwrnsPAVKEFLNLP 108
PX pfam00787
PX domain; PX domains bind to phosphoinositides.
30-91 2.36e-11

PX domain; PX domains bind to phosphoinositides.


Pssm-ID: 459940  Cd Length: 84  Bit Score: 57.25  E-value: 2.36e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364315   30 EVLYSGRRHTVPRRYSEFHALHKRIKKRYK---VPDFPSKRLP-NWRTRGLEQRRQGLETYIQGVL 91
Cdd:pfam00787   1 LPTFSLEEWSVRRRYSDFVELHKKLLRKFPsviIPPLPPKRWLgRYNEEFIEKRRKGLEQYLQRLL 66
PX_MDM1p cd06876
The phosphoinositide binding Phox Homology domain of yeast MDM1p; The PX domain is a ...
39-91 9.15e-11

The phosphoinositide binding Phox Homology domain of yeast MDM1p; The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132786  Cd Length: 133  Bit Score: 56.93  E-value: 9.15e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 564364315  39 TVPRRYSEFHALHKRIKKRY---KVPDFPSKR---LPNWRTRGLEQRRQGLETYIQGVL 91
Cdd:cd06876   58 VVARRYSEFLELHKYLKKRYpgvLKLDFPQKRkisLKYSKTLLVEERRKALEKYLQELL 116
PX_RUN cd07277
The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX ...
4-91 2.15e-10

The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.


Pssm-ID: 132810  Cd Length: 118  Bit Score: 55.43  E-value: 2.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315   4 VHIPSVGPEAEGPRqspekGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYKVP---DFPSKR-LPNWRTRGLEQR 79
Cdd:cd07277    3 VWIPSVFLRGKGSD-----AHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKKKFPVVrsfDFPPKKaIGNKDAKFVEER 77
                         90
                 ....*....|..
gi 564364315  80 RQGLETYIQGVL 91
Cdd:cd07277   78 RKRLQVYLRRVV 89
PX_SNX17_31 cd06885
The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31; The PX domain ...
43-90 1.44e-09

The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some members of the low-density lipoprotein receptor (LDLR) family such as LDLR, VLDLR, ApoER2, and others, regulating their endocytosis. It also binds P-selectin and may regulate its lysosomal degradation. SNX17 is highly expressed in neurons. It binds amyloid precursor protein (APP) and may be involved in its intracellular trafficking and processing to amyloid beta peptide, which plays a central role in the pathogenesis of Alzheimer's disease. The biological function of SNX31 is unknown.


Pssm-ID: 132795  Cd Length: 104  Bit Score: 52.72  E-value: 1.44e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 564364315  43 RYSEFHALHKRIKKRY---KVPDFPSKRLPNWRTRGLEQRRQGLETYIQGV 90
Cdd:cd06885   34 RYSQLHGLNEQLKKEFgnrKLPPFPPKKLLPLTPAQLEERRLQLEKYLQAV 84
PX_SNX13 cd06873
The phosphoinositide binding Phox Homology domain of Sorting Nexin 13; The PX domain is a ...
42-97 5.11e-09

The phosphoinositide binding Phox Homology domain of Sorting Nexin 13; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, through the RGS domain. It preferentially binds phosphatidylinositol-3-phosphate (PI3P) through the PX domain and is localized in early endosomes. SNX13 is involved in endosomal sorting of EGFR into multivesicular bodies (MVB) for delivery to the lysosome.


Pssm-ID: 132783  Cd Length: 120  Bit Score: 51.89  E-value: 5.11e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364315  42 RRYSEFHALHKRIKKRY----KVPdFPSKR-LPNWRTRGLEQRRQGLETYIQGVlyLNQDV 97
Cdd:cd06873   45 RRYSDFHDLHMRLKEKFpnlsKLS-FPGKKtFNNLDRAFLEKRRKMLNQYLQSL--LNPEV 102
PX_KIF16B_SNX23 cd06874
The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23; The ...
24-88 1.09e-08

The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132784  Cd Length: 127  Bit Score: 51.23  E-value: 1.09e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564364315  24 HMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYK---VPDFPSKRL-PNWRTRGLEQRRQGLETYIQ 88
Cdd:cd06874   18 HFEFEVKITVLDETWTVFRRYSRFRELHKTMKLKYPevaALEFPPKKLfGNKSERVAKERRRQLETYLR 86
PX_SNX27 cd06886
The phosphoinositide binding Phox Homology domain of Sorting Nexin 27; The PX domain is a ...
37-90 5.74e-08

The phosphoinositide binding Phox Homology domain of Sorting Nexin 27; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface expression and increasing degradation. SNX27 also associates with 5-hydroxytryptamine type 4 receptor (5-HT4R), cytohesin associated scaffolding protein (CASP), and diacylglycerol kinase zeta, and may play a role in their intracellular trafficking and endocytic recycling. The SNX27 PX domain preferentially binds to phosphatidylinositol-3-phosphate (PI3P) and is important for targeting to the early endosome.


Pssm-ID: 132796  Cd Length: 106  Bit Score: 48.56  E-value: 5.74e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 564364315  37 RHTVPRRYSEFHALHKRIKKR---YKVPDFPSKRLPNWRTRGLEQRRQGLETYIQGV 90
Cdd:cd06886   31 RQLCSRRYREFANLHQNLKKEfpdFQFPKLPGKWPFSLSEQQLDARRRGLEQYLEKV 87
PX_SNX1_2_like cd06859
The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2; The PX domain is ...
22-105 1.15e-07

The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex.


Pssm-ID: 132769 [Multi-domain]  Cd Length: 114  Bit Score: 47.96  E-value: 1.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  22 KGHMVFQV-----EVLYSGRRHTVPRRYSEFHALHKRIKKRYK---VPDFPSKRL---PNWRTRGLEQRRQGLETYIQGV 90
Cdd:cd06859   16 SAYVVYRVttktnLPDFKKSEFSVLRRYSDFLWLYERLVEKYPgriVPPPPEKQAvgrFKVKFEFIEKRRAALERFLRRI 95
                         90
                 ....*....|....*...
gi 564364315  91 L---YLNQDvpKELLEFL 105
Cdd:cd06859   96 AahpVLRKD--PDFRLFL 111
PX_CISK cd06870
The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase; The ...
22-91 4.39e-07

The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.


Pssm-ID: 132780  Cd Length: 109  Bit Score: 46.25  E-value: 4.39e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364315  22 KGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKryKVPD----FPSKRL--PNWRTRGLEQRRQGLETYIQGVL 91
Cdd:cd06870   18 KRFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKK--QFPAsnlkIPGKRLfgNNFDPDFIKQRRAGLDEFIQRLV 91
PX_YPT35 cd07280
The phosphoinositide binding Phox Homology domain of the fungal protein YPT35; The PX domain ...
18-106 5.73e-07

The phosphoinositide binding Phox Homology domain of the fungal protein YPT35; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.


Pssm-ID: 132813  Cd Length: 120  Bit Score: 46.17  E-value: 5.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  18 QSPEKGHMVFQV--EVLYS-GRRHTVPRRYSEFHALHKRIKKRYK------VPDFPSKR-----LPNWRTRGLEQRRQGL 83
Cdd:cd07280   16 DTGGGAYVVWKItiETKDLiGSSIVAYKRYSEFVQLREALLDEFPrhkrneIPQLPPKVpwydsRVNLNKAWLEKRRRGL 95
                         90       100
                 ....*....|....*....|....*
gi 564364315  84 ETYIQGVLyLNQDV--PKELLEFLR 106
Cdd:cd07280   96 QYFLNCVL-LNPVFggSPVVKEFLL 119
PX_SNX8_Mvp1p_like cd06866
The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p; The PX ...
20-87 2.58e-06

The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.


Pssm-ID: 132776  Cd Length: 105  Bit Score: 44.14  E-value: 2.58e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564364315  20 PEKGHMVFQ-VEVLYSGRRH--TVPRRYSEFHALHKRIKKRY---KVPDFPSKRLPNWRTRG-LEQRRQGLETYI 87
Cdd:cd06866    9 PEKKGLFLKhVEYEVSSKRFksTVYRRYSDFVWLHEYLLKRYpyrMVPALPPKRIGGSADREfLEARRRGLSRFL 83
PX_SNX20_21_like cd07279
The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21; The PX domain ...
20-107 2.90e-06

The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.


Pssm-ID: 132812  Cd Length: 112  Bit Score: 44.24  E-value: 2.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  20 PEKGHMVFQVEVLYSGRRHTVP----RRYSEFHALHKRIKKRYKVP----DFPSKRLP-NWRTRGLEQRRQGLETYIQGV 90
Cdd:cd07279   14 GEKKYVVYQLAVVQTGDPDTQPafieRRYSDFLKLYKALRKQHPQLmakvSFPRKVLMgNFSSELIAERSRAFEQFLGHI 93
                         90
                 ....*....|....*...
gi 564364315  91 LYLNQ-DVPKELLEFLRL 107
Cdd:cd07279   94 LSIPNlRDSKAFLDFLQG 111
COG5391 COG5391
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ...
34-99 3.66e-06

Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];


Pssm-ID: 227680 [Multi-domain]  Cd Length: 524  Bit Score: 46.33  E-value: 3.66e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564364315  34 SGRRHTVPRRYSEFHALHKRIKKRYK---VPDFPSKRL------PNWRTRGLEQRRQGLETYIQGVLyLNQDVPK 99
Cdd:COG5391  169 ESRPLVVRRRYSDFESLHSILIKLLPlcaIPPLPSKKSnseyygDRFSDEFIEERRQSLQNFLRRVS-THPLLSN 242
PX_SNX25 cd06878
The phosphoinositide binding Phox Homology domain of Sorting Nexin 25; The PX domain is a ...
39-105 8.20e-06

The phosphoinositide binding Phox Homology domain of Sorting Nexin 25; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs.


Pssm-ID: 132788  Cd Length: 127  Bit Score: 43.13  E-value: 8.20e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564364315  39 TVPRRYSEFHALHKRIK------KRYKVPDFPSKRLPNWRTRGLEQRRQGLETYIQGVL---YLNQDvpKELLEFL 105
Cdd:cd06878   51 VVTRKLSEFHDLHRKLKecsswlKKVELPSLSKKWFKSIDKKFLDKSKNQLQKYLQFILedeTLCQS--EALYSFL 124
PX_Grd19 cd07295
The phosphoinositide binding Phox Homology domain of fungal Grd19; The PX domain is a ...
36-90 3.39e-05

The phosphoinositide binding Phox Homology domain of fungal Grd19; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.


Pssm-ID: 132828  Cd Length: 116  Bit Score: 41.33  E-value: 3.39e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 564364315  36 RRHTVPRRYSEFHALHKRIKK---RYKVPDFPSKRLPN-WRTRGLEQRRQGLETYIQGV 90
Cdd:cd07295   36 RVSSVRRRYSDFEYFRDILERespRVMIPPLPGKIFTNrFSDEVIEERRQGLETFLQSV 94
PX_UP2_fungi cd06869
The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins; The PX ...
33-74 7.25e-05

The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.


Pssm-ID: 132779  Cd Length: 119  Bit Score: 40.34  E-value: 7.25e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 564364315  33 YSGRRHTVPRRYSEFHALHKRIKKRY---KVPDFPSK-RLPNWRTR 74
Cdd:cd06869   45 EEYRTIYVARRYSDFKKLHHDLKKEFpgkKLPKLPHKdKLPREKLR 90
PX_PI3K_C2 cd06883
The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases; The ...
17-97 9.13e-05

The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a PX domain, and a second C2 domain at the C-terminus. Class II PI3Ks include three vertebrate isoforms (alpha, beta, and gamma), the Drosophila PI3K_68D, and similar proteins.


Pssm-ID: 132793  Cd Length: 109  Bit Score: 40.03  E-value: 9.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  17 RQSPEKGHMvFQVEVLYSGRRHT--VPRRYSEFHALHKRIKKRYkvPDFPSKRLPNW----RTRGL---EQRRQGLETYI 87
Cdd:cd06883   10 RYSPEKYYI-YVVKVTRENQTEPsfVFRTFEEFQELHNKLSLLF--PSLKLPSFPARvvlgRSHIKqvaERRKIELNSYL 86
                         90
                 ....*....|
gi 564364315  88 QGVLYLNQDV 97
Cdd:cd06883   87 KSLFNASPEV 96
PX_p40phox cd06882
The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase; The ...
24-114 1.11e-04

The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase; The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox PX domain binds to PI3P, an abundant lipid in phagosomal membranes, playing an important role in the localization of NADPH oxidase. The PX domain of p40phox is also involved in protein-protein interaction.


Pssm-ID: 132792  Cd Length: 123  Bit Score: 40.11  E-value: 1.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  24 HMVFQVEV-LYSGRRHTVPRRYSEFHALHKRIKKRY-----------KVPDFPSKRLPNWRTRGLEQRRQGLETYIQGVL 91
Cdd:cd06882   20 YYVFVIEVkTKGGSKYLIYRRYRQFFALQSKLEERFgpeagssaydcTLPTLPGKIYVGRKAEIAERRIPLLNRYMKELL 99
                         90       100
                 ....*....|....*....|...
gi 564364315  92 YLNQDVPKELLEFLRLRHFPTDS 114
Cdd:cd06882  100 SLPVWVLMDEDVRLFFYQTESDS 122
PX_NoxO1 cd06889
The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1; The PX domain ...
20-97 1.36e-04

The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of NoxO1 preferentially binds phosphatidylinositol-3,5-bisphosphate [PI(3,5)P2], PI5P, and PI4P.


Pssm-ID: 132799  Cd Length: 121  Bit Score: 39.68  E-value: 1.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  20 PEKGHMVFQVEVLYS-GRRHTVPRRYSEFHALHKRIKKRY---------------KVPDFPSKRLPNWRTRGLEQRRQGL 83
Cdd:cd06889   15 QKRRHKTYMFSVLWSdGSELFVYRSLEEFRKLHKQLKEKFpveagllrssdrvlpKFKDAPSLGSLKGSTSRSLARLKLL 94
                         90
                 ....*....|....
gi 564364315  84 ETYIQGVLYLNQDV 97
Cdd:cd06889   95 ETYCQELLRLDEKV 108
PX_SNX3_like cd06894
The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins; The ...
36-90 2.90e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.


Pssm-ID: 132804  Cd Length: 123  Bit Score: 38.98  E-value: 2.90e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564364315  36 RRHTVPRRYSEFHALHKRIKKRYK--VPDFPSK----RLPNWRTRGL------EQRRQGLETYIQGV 90
Cdd:cd06894   36 KESSVRRRYSDFEWLRSELERDSKivVPPLPGKalkrQLPFRGDDGIfeeefiEERRKGLETFINKV 102
PX_SNX10 cd06898
The phosphoinositide binding Phox Homology domain of Sorting Nexin 10; The PX domain is a ...
39-91 2.96e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 10; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.


Pssm-ID: 132808  Cd Length: 113  Bit Score: 38.85  E-value: 2.96e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564364315  39 TVPRRYSEFHALHKRIKKR---YKVPDFPSKRL-PNWRTRG-LEQRRQGLETYIQGVL 91
Cdd:cd06898   38 CVRRRYSEFVWLRNRLQKNallIQLPSLPPKNLfGRFNNEGfIEERQQGLQDFLEKVL 95
PX_SNX19 cd06893
The phosphoinositide binding Phox Homology domain of Sorting Nexin 19; The PX domain is a ...
38-107 4.76e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 19; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found in type-1 diabetes. It inhibits the conversion of phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2] to PI(3,4,5)P3, which leads in the decrease of protein phosphorylation in the Akt signaling pathway, resulting in apoptosis. SNX19 may also be implicated in coronary heart disease and thyroid oncocytic tumors.


Pssm-ID: 132803 [Multi-domain]  Cd Length: 132  Bit Score: 38.68  E-value: 4.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  38 HTVPRRYSEFHALHKRIKKRYKVPDF-----PSKRLP-----NWRTRGLEQRRQGLETYIqGVLYLNQDV--PKELLEFL 105
Cdd:cd06893   51 HTVNRRFREFLTLQTRLEENPKFRKImnvkgPPKRLFdlpfgNMDKDKIEARRGLLETFL-RQLCSIPEIsnSEEVQEFL 129

                 ..
gi 564364315 106 RL 107
Cdd:cd06893  130 AY 131
PX_SNX20 cd07300
The phosphoinositide binding Phox Homology domain of Sorting Nexin 20; The PX domain is a ...
24-105 6.08e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 20; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX domain of SNX20 binds PIs and targets the SNX20/PSGL-1 complex to endosomes. SNX20 may function in the sorting and cycling of PSGL-1 into endosomes.


Pssm-ID: 132833  Cd Length: 114  Bit Score: 37.87  E-value: 6.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  24 HMVFQVEVLYSG----RRHTVPRRYSEFHALHKRIKK--RYKVPD--FPSKRLP-NWRTRGLEQRRQGLETYIqGVLYLN 94
Cdd:cd07300   18 HVVYQIIVIQTGsfdcNKVVIERRYSDFLKLHQELLSdfSEELEDvvFPKKKLTgNFSEEIIAERRVALRDYL-TLLYSL 96
                         90
                 ....*....|...
gi 564364315  95 QDV--PKELLEFL 105
Cdd:cd07300   97 RFVrrSQAFQDFL 109
PX_SNX16 cd07276
The phosphoinositide binding Phox Homology domain of Sorting Nexin 16; The PX domain is a ...
26-91 7.45e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 16; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.


Pssm-ID: 132809  Cd Length: 110  Bit Score: 37.39  E-value: 7.45e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564364315  26 VFQVEVLYSGRRH-TVPRRYSEFHALHKRIKKRYkvPDF----PSKRL--PNWRTRGLEQRRQGLETYIQGVL 91
Cdd:cd07276   22 VYKIRVENKVGDSwFVFRRYTDFVRLNDKLKQMF--PGFrlslPPKRWfkDNFDPDFLEERQLGLQAFVNNIM 92
PX_SNX1 cd07281
The phosphoinositide binding Phox Homology domain of Sorting Nexin 1; The PX domain is a ...
20-103 8.70e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 1; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. SNX1 contains a Bin/Amphiphysin/Rvs (BAR) domain C-terminal to the PX domain. The PX domain of SNX1 specifically binds phosphatidylinositol-3-phosphate (PI3P) and PI(3,5)P2, while the BAR domain detects membrane curvature. Both domains help determine the specific membrane-targeting of SNX1, which is localized to a microdomain in early endosomes where it regulates cation-independent mannose-6-phosphate receptor retrieval to the trans Golgi network.


Pssm-ID: 132814  Cd Length: 124  Bit Score: 37.73  E-value: 8.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  20 PEK------GHMVFQVEV-----LYSGRRHTVPRRYSEFHALHKRIKKR-----YKVPDFPSKRL-----------PNWR 72
Cdd:cd07281    8 PEKigdgmnAYVVYKVTTqtsllMFRSKHFTVKRRFSDFLGLYEKLSEKhsqngFIVPPPPEKSLigmtkvkvgkeDSSS 87
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 564364315  73 TRGLEQRRQGLETYIQGV-----LYLNQDVpKELLE 103
Cdd:cd07281   88 AEFLERRRAALERYLQRIvshpsLLQDPDV-REFLE 122
PX_HS1BP3 cd06868
The phosphoinositide binding Phox Homology domain of HS1BP3; The PX domain is a ...
11-105 8.79e-04

The phosphoinositide binding Phox Homology domain of HS1BP3; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.


Pssm-ID: 132778  Cd Length: 120  Bit Score: 37.39  E-value: 8.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  11 PEAEGPRQSPEKGHMVFQVEVL-----YSGRRH--------TVPRRYSEFHALHKRIKKRYK---VPDFPSKRLpnWRTR 74
Cdd:cd06868    7 PEYQEIRGKTSSGHVLYQIVVVtrlaaFKSAKHkeedvvqfMVSKKYSEFEELYKKLSEKYPgtiLPPLPRKAL--FVSE 84
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 564364315  75 G-LEQRRQGLETYIQGVlylNQDvPK-----ELLEFL 105
Cdd:cd06868   85 SdIRERRAAFNDFMRFI---SKD-EKlancpELLEFL 117
PX_SNX4 cd06864
The phosphoinositide binding Phox Homology domain of Sorting Nexin 4; The PX domain is a ...
38-105 6.12e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexin 4; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and the long form of the leptin receptor.


Pssm-ID: 132774  Cd Length: 129  Bit Score: 35.42  E-value: 6.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315  38 HTVPRRYSEFHALHKRIKKRYK---VPDFPSKRLP---------NWRTRGLEQRRQGLETYIQGVL---YLNQDvpKELL 102
Cdd:cd06864   46 SSLWRRYSEFELLRNYLVVTYPyviVPPLPEKRAMfmwqklssdTFDPDFVERRRAGLENFLLRVAghpELCQD--KIFL 123

                 ...
gi 564364315 103 EFL 105
Cdd:cd06864  124 EFL 126
PX_SNX14 cd06877
The phosphoinositide binding Phox Homology domain of Sorting Nexin 14; The PX domain is a ...
4-91 6.37e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexin 14; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs.


Pssm-ID: 132787  Cd Length: 119  Bit Score: 35.04  E-value: 6.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564364315   4 VHIPSVGPeaegpRQSPEKGH--MVFQVEVLYSGRRH--------TVPRRYSEFHALHKRIKK---RYKVPDFPSKRLPN 70
Cdd:cd06877    5 VSIPYVEM-----RRDPSNGEriYVFCIEVERNDRRAkghepqhwSVLRRYNEFYVLESKLTEfhgEFPDAPLPSRRIFG 79
                         90       100
                 ....*....|....*....|..
gi 564364315  71 WRTRG-LEQRRQGLETYIQGVL 91
Cdd:cd06877   80 PKSYEfLESKREIFEEFLQKLL 101
PX_SNX3 cd07293
The phosphoinositide binding Phox Homology domain of Sorting Nexin 3; The PX domain is a ...
32-90 8.19e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexin 3; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. SNX3 is required for the formation of multivesicular bodies, which function as transport intermediates to late endosomes. It also promotes cell surface expression of the amiloride-sensitive epithelial Na+ channel (ENaC), which is critical in sodium homeostasis and maintenance of extracellular fluid volume.


Pssm-ID: 132826  Cd Length: 123  Bit Score: 34.97  E-value: 8.19e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564364315  32 LYSGRRHTVPRRYSEFHALHKRIKKRYK--VPDFPSK----RLPNWRTRG------LEQRRQGLETYIQGV 90
Cdd:cd07293   32 IFKLKESTVRRRYSDFEWLRSELERESKvvVPPLPGKalfrQLPFRGDDGifddsfIEERKQGLEQFLNKV 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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