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Conserved domains on  [gi|808369080|ref|XP_012189838|]
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choline dehydrogenase [Pseudozyma hubeiensis SY62]

Protein Classification

GMC family oxidoreductase( domain architecture ID 11455227)

GMC (glucose-methanol-choline) family oxidoreductase is a flavoprotein that catalyzes the oxidation of an alcohol moiety to the corresponding aldehyde with the concomitant reduction of flavin adenine dinucleotide (FAD)

EC:  1.-.-.-
Gene Ontology:  GO:0016491|GO:0050660
PubMed:  23578136|1542121
SCOP:  3000055

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
16-609 1.28e-144

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


:

Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 429.25  E-value: 1.28e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  16 TEFDYIVVGGGTAGLAVAARLSEDASVTVGVIEAGLWrPEDPKINYPAFIGQSLMNPEYDWCLETEPQQHSNGRKYIWPR 95
Cdd:COG2303    3 EEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGR-DDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWPR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  96 GKVLGGSSALNFLVWQRGYKGEYDDIGKLGNEGWNWDDYATFSRKSATLDKPSSelqkanlatcdeELHGKDGPLQTSYS 175
Cdd:COG2303   82 GKVLGGSSSINGMIYVRGQPEDFDLWAQLGNQGWGYDDVLPYFKRAEDNERGAD------------AYHGRSGPLPVSDP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 176 KWYTGAQRPWFDALKSLGILNVSDGLGGSNSGFWVSPVTIDSNKsvRSYSANAYYAPNASRSNLKVITGAHASKIVFADQ 255
Cdd:COG2303  150 PLPNPLSDAFIEAAEELGIPRADDFNGGACEGCGFCQVTCRNGA--RWSAARAYLPPALKRPNLTVRTGALVTRILFDGG 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 256 KssngdlvASGVEFIVDGKTYTVKARKEVVVSGGTVNSPHLLEHSGIGKAEVLKAAGVEQRIELD-VGENVQDHVYCTSS 334
Cdd:COG2303  228 R-------ATGVEYRDDGEEHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPgVGRNLQDHLEVSVV 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 335 FKLNPGYITWDKMRQDdfakAAMEQYHGEGedRGIIASAFsgfayiplsqylsADEIAKIKSDvekvdwskyskgvqetv 414
Cdd:COG2303  301 FRFKEPVTLNKSLRKA----RIGLQYLLTR--SGPLTSNV-------------AEAGGFFRSD----------------- 344
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 415 kmqlarlDDEKCPFTELIFAPGFF--ATASPPADGQEYYSILSCLQQPFSRGNIHIASSDATQPSKINPNYFSVDADLEI 492
Cdd:COG2303  345 -------PGLERPDLQFHFLPLGLtpRWGKKALHDGHGFTAHVEQLRPESRGRVTLDSADPLGAPLIRPNYLSDENDRRV 417
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 493 LSKAVKYCETVTATSPLKEITVARQDPDPEkYSSDADfREFTKDQSVTEYHPIGSCSMMPREkGGVVDARLKVYGTSNVR 572
Cdd:COG2303  418 LVAGVRLAREIAAQPALAPYRGEEILPGPD-VQSDEE-LAFIRARAYTIYHPVGTCRMGTDP-DSVVDPRLRVHGVENLR 494
                        570       580       590
                 ....*....|....*....|....*....|....*..
gi 808369080 573 VADASIIPIHVSSHIVATVYAIGEKAAHMIREDAVKA 609
Cdd:COG2303  495 VVDASVMPTITSGNTNAPTIMLAEKAADMILGDYLKN 531
 
Name Accession Description Interval E-value
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
16-609 1.28e-144

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 429.25  E-value: 1.28e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  16 TEFDYIVVGGGTAGLAVAARLSEDASVTVGVIEAGLWrPEDPKINYPAFIGQSLMNPEYDWCLETEPQQHSNGRKYIWPR 95
Cdd:COG2303    3 EEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGR-DDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWPR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  96 GKVLGGSSALNFLVWQRGYKGEYDDIGKLGNEGWNWDDYATFSRKSATLDKPSSelqkanlatcdeELHGKDGPLQTSYS 175
Cdd:COG2303   82 GKVLGGSSSINGMIYVRGQPEDFDLWAQLGNQGWGYDDVLPYFKRAEDNERGAD------------AYHGRSGPLPVSDP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 176 KWYTGAQRPWFDALKSLGILNVSDGLGGSNSGFWVSPVTIDSNKsvRSYSANAYYAPNASRSNLKVITGAHASKIVFADQ 255
Cdd:COG2303  150 PLPNPLSDAFIEAAEELGIPRADDFNGGACEGCGFCQVTCRNGA--RWSAARAYLPPALKRPNLTVRTGALVTRILFDGG 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 256 KssngdlvASGVEFIVDGKTYTVKARKEVVVSGGTVNSPHLLEHSGIGKAEVLKAAGVEQRIELD-VGENVQDHVYCTSS 334
Cdd:COG2303  228 R-------ATGVEYRDDGEEHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPgVGRNLQDHLEVSVV 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 335 FKLNPGYITWDKMRQDdfakAAMEQYHGEGedRGIIASAFsgfayiplsqylsADEIAKIKSDvekvdwskyskgvqetv 414
Cdd:COG2303  301 FRFKEPVTLNKSLRKA----RIGLQYLLTR--SGPLTSNV-------------AEAGGFFRSD----------------- 344
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 415 kmqlarlDDEKCPFTELIFAPGFF--ATASPPADGQEYYSILSCLQQPFSRGNIHIASSDATQPSKINPNYFSVDADLEI 492
Cdd:COG2303  345 -------PGLERPDLQFHFLPLGLtpRWGKKALHDGHGFTAHVEQLRPESRGRVTLDSADPLGAPLIRPNYLSDENDRRV 417
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 493 LSKAVKYCETVTATSPLKEITVARQDPDPEkYSSDADfREFTKDQSVTEYHPIGSCSMMPREkGGVVDARLKVYGTSNVR 572
Cdd:COG2303  418 LVAGVRLAREIAAQPALAPYRGEEILPGPD-VQSDEE-LAFIRARAYTIYHPVGTCRMGTDP-DSVVDPRLRVHGVENLR 494
                        570       580       590
                 ....*....|....*....|....*....|....*..
gi 808369080 573 VADASIIPIHVSSHIVATVYAIGEKAAHMIREDAVKA 609
Cdd:COG2303  495 VVDASVMPTITSGNTNAPTIMLAEKAADMILGDYLKN 531
PRK02106 PRK02106
choline dehydrogenase; Validated
17-603 5.81e-102

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 320.24  E-value: 5.81e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  17 EFDYIVVGGGTAGLAVAARLSEDASVTVGVIEAGlwRPE---DPKINYPAFIGQSLMNPEYDWCLETEPQQHSNGRKYIW 93
Cdd:PRK02106   5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG--GPDyrwDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  94 PRGKVLGGSSALNFLVWQRGYKGEYDDIGKL-GNEGWNWDDYATFSRKSATLDKPsselqkanlatcDEELHGKDGPLQT 172
Cdd:PRK02106  83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELpGLEGWSYADCLPYFKKAETRDGG------------EDDYRGGDGPLSV 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 173 SYSKwytGAQRPWFDALKSLGI---LNVSDGLGGS-NSGFWVSPVTIDsnKSVRSYSANAYYAPNASRSNLKVITGAHAS 248
Cdd:PRK02106 151 TRGK---PGTNPLFQAFVEAGVqagYPRTDDLNGYqQEGFGPMDRTVT--NGRRWSAARAYLDPALKRPNLTIVTHALTD 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 249 KIVFADQKssngdlvASGVEFIVDGKTYTVKARKEVVVSGGTVNSPHLLEHSGIGKAEVLKAAGVEQRIEL-DVGENVQD 327
Cdd:PRK02106 226 RILFEGKR-------AVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLpGVGENLQD 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 328 H--VY----CTSSFKLNPGYITWDKmrqddfAKAAMEQYHGegeDRGIIASAF---SGFayiplsqylsadeiakIKSDv 398
Cdd:PRK02106 299 HleVYiqyeCKQPVSLYPALKWWNK------PKIGAEWLFT---GTGLGASNHfeaGGF----------------IRSR- 352
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 399 EKVDWSkyskgvqetvKMQ-----LARLDDEKCPFTElifaPGFFATAsppadGQEYysilsclqqPFSRGNIHIASSDA 473
Cdd:PRK02106 353 AGVDWP----------NIQyhflpVAIRYDGSNAVKG----HGFQAHV-----GPMR---------SPSRGSVKLKSADP 404
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 474 TQPSKINPNYFSVDADLEILSKAVKYCETVTATSPLKEITVARQDPDPEKySSDADFREFTKDQSVTEYHPIGSCSMMPR 553
Cdd:PRK02106 405 RAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADV-QTDEEIDAFVREHAETAYHPSCTCKMGTD 483
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|
gi 808369080 554 EKgGVVDARLKVYGTSNVRVADASIIPIHVSSHIVATVYAIGEKAAHMIR 603
Cdd:PRK02106 484 PM-AVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
460-598 3.52e-41

GMC oxidoreductase; This domain found associated with pfam00732.


Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 146.00  E-value: 3.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  460 PFSRGNIHIASSDATQPSKINPNYFSVDADLEILSKAVKYCETVTATSPLKEITVARQDPDPEKYS----SDADFREFTK 535
Cdd:pfam05199   1 PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPVPEVSDaavtSDDELLAYIR 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 808369080  536 DQSVTEYHPIGSCSMMPREKGGVVDARLKVYGTSNVRVADASIIPIHVSSHIVATVYAIGEKA 598
Cdd:pfam05199  81 AAASTSYHPMGTCRMGADPDDAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 143
 
Name Accession Description Interval E-value
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
16-609 1.28e-144

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 429.25  E-value: 1.28e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  16 TEFDYIVVGGGTAGLAVAARLSEDASVTVGVIEAGLWrPEDPKINYPAFIGQSLMNPEYDWCLETEPQQHSNGRKYIWPR 95
Cdd:COG2303    3 EEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGR-DDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWPR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  96 GKVLGGSSALNFLVWQRGYKGEYDDIGKLGNEGWNWDDYATFSRKSATLDKPSSelqkanlatcdeELHGKDGPLQTSYS 175
Cdd:COG2303   82 GKVLGGSSSINGMIYVRGQPEDFDLWAQLGNQGWGYDDVLPYFKRAEDNERGAD------------AYHGRSGPLPVSDP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 176 KWYTGAQRPWFDALKSLGILNVSDGLGGSNSGFWVSPVTIDSNKsvRSYSANAYYAPNASRSNLKVITGAHASKIVFADQ 255
Cdd:COG2303  150 PLPNPLSDAFIEAAEELGIPRADDFNGGACEGCGFCQVTCRNGA--RWSAARAYLPPALKRPNLTVRTGALVTRILFDGG 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 256 KssngdlvASGVEFIVDGKTYTVKARKEVVVSGGTVNSPHLLEHSGIGKAEVLKAAGVEQRIELD-VGENVQDHVYCTSS 334
Cdd:COG2303  228 R-------ATGVEYRDDGEEHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPgVGRNLQDHLEVSVV 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 335 FKLNPGYITWDKMRQDdfakAAMEQYHGEGedRGIIASAFsgfayiplsqylsADEIAKIKSDvekvdwskyskgvqetv 414
Cdd:COG2303  301 FRFKEPVTLNKSLRKA----RIGLQYLLTR--SGPLTSNV-------------AEAGGFFRSD----------------- 344
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 415 kmqlarlDDEKCPFTELIFAPGFF--ATASPPADGQEYYSILSCLQQPFSRGNIHIASSDATQPSKINPNYFSVDADLEI 492
Cdd:COG2303  345 -------PGLERPDLQFHFLPLGLtpRWGKKALHDGHGFTAHVEQLRPESRGRVTLDSADPLGAPLIRPNYLSDENDRRV 417
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 493 LSKAVKYCETVTATSPLKEITVARQDPDPEkYSSDADfREFTKDQSVTEYHPIGSCSMMPREkGGVVDARLKVYGTSNVR 572
Cdd:COG2303  418 LVAGVRLAREIAAQPALAPYRGEEILPGPD-VQSDEE-LAFIRARAYTIYHPVGTCRMGTDP-DSVVDPRLRVHGVENLR 494
                        570       580       590
                 ....*....|....*....|....*....|....*..
gi 808369080 573 VADASIIPIHVSSHIVATVYAIGEKAAHMIREDAVKA 609
Cdd:COG2303  495 VVDASVMPTITSGNTNAPTIMLAEKAADMILGDYLKN 531
PRK02106 PRK02106
choline dehydrogenase; Validated
17-603 5.81e-102

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 320.24  E-value: 5.81e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  17 EFDYIVVGGGTAGLAVAARLSEDASVTVGVIEAGlwRPE---DPKINYPAFIGQSLMNPEYDWCLETEPQQHSNGRKYIW 93
Cdd:PRK02106   5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG--GPDyrwDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  94 PRGKVLGGSSALNFLVWQRGYKGEYDDIGKL-GNEGWNWDDYATFSRKSATLDKPsselqkanlatcDEELHGKDGPLQT 172
Cdd:PRK02106  83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELpGLEGWSYADCLPYFKKAETRDGG------------EDDYRGGDGPLSV 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 173 SYSKwytGAQRPWFDALKSLGI---LNVSDGLGGS-NSGFWVSPVTIDsnKSVRSYSANAYYAPNASRSNLKVITGAHAS 248
Cdd:PRK02106 151 TRGK---PGTNPLFQAFVEAGVqagYPRTDDLNGYqQEGFGPMDRTVT--NGRRWSAARAYLDPALKRPNLTIVTHALTD 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 249 KIVFADQKssngdlvASGVEFIVDGKTYTVKARKEVVVSGGTVNSPHLLEHSGIGKAEVLKAAGVEQRIEL-DVGENVQD 327
Cdd:PRK02106 226 RILFEGKR-------AVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLpGVGENLQD 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 328 H--VY----CTSSFKLNPGYITWDKmrqddfAKAAMEQYHGegeDRGIIASAF---SGFayiplsqylsadeiakIKSDv 398
Cdd:PRK02106 299 HleVYiqyeCKQPVSLYPALKWWNK------PKIGAEWLFT---GTGLGASNHfeaGGF----------------IRSR- 352
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 399 EKVDWSkyskgvqetvKMQ-----LARLDDEKCPFTElifaPGFFATAsppadGQEYysilsclqqPFSRGNIHIASSDA 473
Cdd:PRK02106 353 AGVDWP----------NIQyhflpVAIRYDGSNAVKG----HGFQAHV-----GPMR---------SPSRGSVKLKSADP 404
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 474 TQPSKINPNYFSVDADLEILSKAVKYCETVTATSPLKEITVARQDPDPEKySSDADFREFTKDQSVTEYHPIGSCSMMPR 553
Cdd:PRK02106 405 RAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADV-QTDEEIDAFVREHAETAYHPSCTCKMGTD 483
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|
gi 808369080 554 EKgGVVDARLKVYGTSNVRVADASIIPIHVSSHIVATVYAIGEKAAHMIR 603
Cdd:PRK02106 484 PM-AVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
460-598 3.52e-41

GMC oxidoreductase; This domain found associated with pfam00732.


Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 146.00  E-value: 3.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  460 PFSRGNIHIASSDATQPSKINPNYFSVDADLEILSKAVKYCETVTATSPLKEITVARQDPDPEKYS----SDADFREFTK 535
Cdd:pfam05199   1 PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPVPEVSDaavtSDDELLAYIR 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 808369080  536 DQSVTEYHPIGSCSMMPREKGGVVDARLKVYGTSNVRVADASIIPIHVSSHIVATVYAIGEKA 598
Cdd:pfam05199  81 AAASTSYHPMGTCRMGADPDDAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 143
GMC_oxred_N pfam00732
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
86-328 3.75e-32

GMC oxidoreductase; This family of proteins bind FAD as a cofactor.


Pssm-ID: 366272 [Multi-domain]  Cd Length: 218  Bit Score: 123.55  E-value: 3.75e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080   86 SNGRKYIWPRGKVLGGSSALNFLVWQRGYKGEYDDIGKL-GNEGWNWDDYATFSRKSatldkpsselqkanlatcDEELH 164
Cdd:pfam00732  14 VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEfGLEGWGYDDYLPYMDKV------------------EGPLG 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  165 GKDGPLQTSyskwytGAQRPWFDALKSLGI--LNVSDGLGGSNS-GFWVSPVtidsNKSVRSYSANAYYAPNASRsNLKV 241
Cdd:pfam00732  76 VTTKGIEES------PLNQALLKAAEELGYpvEAVPRNSNGCHYcGFCGLGC----PTGAKQSTARTWLRPALER-NLRI 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  242 ITGAHASKIVFAdqkssNGDLVASGVEFIVDGKTY--TVKARKEVVVSGGTVNSPHLLEHSGIGKAevlkaagveqriEL 319
Cdd:pfam00732 145 LTGAKAEKIIIL-----GRGGRAVGVEARDGGGGIkrLITAAKEVVVAAGALNTPPLLLRSGLGKN------------PH 207

                  ....*....
gi 808369080  320 DVGENVQDH 328
Cdd:pfam00732 208 PVGKNLQLH 216
PLN02785 PLN02785
Protein HOTHEAD
18-595 5.65e-13

Protein HOTHEAD


Pssm-ID: 215420 [Multi-domain]  Cd Length: 587  Bit Score: 71.76  E-value: 5.65e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  18 FDYIVVGGGTAGLAVAARLSEDASVTVgvieagLWRPEDPKINypafIGQSLMNpEYDWCL-ETEPQQHSNG----RKYI 92
Cdd:PLN02785  56 YDYIVVGGGTAGCPLAATLSQNFSVLL------LERGGVPFGN----ANVSFLE-NFHIGLaDTSPTSASQAfistDGVI 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  93 WPRGKVLGGSSALNFLVWQRGYKGEYDDIG---KLGNEGWNWDDYATfsrksatldkpsseLQKANLATCDEELhgKDGP 169
Cdd:PLN02785 125 NARARVLGGGTCINAGFYSRASTRFIQKAGwdaKLVNESYPWVERQI--------------VHWPKVAPWQAAL--RDSL 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 170 LQTSYSKW--YTgaqrpwFDALKSLGIlnvsdglGGsnsgfwvspvTIDSNKSVRSYSAN--AYYAPNasrsNLKVITGA 245
Cdd:PLN02785 189 LEVGVSPFngFT------YDHVYGTKV-------GG----------TIFDEFGRRHTAAEllAAGNPN----KLRVLLHA 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 246 HASKIVFadqKSSNGDLVASGVEFI-VDGKTY----TVKARKEVVVSGGTVNSPHLLEHSGIGKAEVLKAAGVEQRIELD 320
Cdd:PLN02785 242 TVQKIVF---DTSGKRPRATGVIFKdENGNQHqaflSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNE 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 321 -VGENVQDHvyctssfKLNPGYITwdkmrqddfAKAAMEQYHGEG---EDRGIIASAFSGFAYIPLSQY-----LSAdEI 391
Cdd:PLN02785 319 hVGKGMADN-------PMNSIFVP---------SKAPVEQSLIQTvgiTKMGVYIEASSGFGQSPDSIHchhgiMSA-EI 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 392 AKIKSDVEKvdwSKYSKGVQETVKMQLARLDDekcpftelIFAPGFfatasppadgqeyysILSCLQQPFSRGNIHIASS 471
Cdd:PLN02785 382 GQLSTIPPK---QRTPEAIQAYIHRKKNLPHE--------AFNGGF---------------ILEKIAGPISTGHLSLINT 435
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080 472 DATQPSKINPNYFSVDADLEILSKAVKYCETVTATSPLKEIT---------------VARQDPDPEKYSSDADFREFTKD 536
Cdd:PLN02785 436 NVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTqcdkqtmekvlnmsvKANINLIPKHTNDTKSLEQFCKD 515
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 808369080 537 QSVTEYHPIGSCSMmprekGGVVDARLKVYGTSNVRVADASIIPIHVSSHIVATVYAIG 595
Cdd:PLN02785 516 TVITIWHYHGGCHV-----GKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMG 569
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
17-44 9.82e-04

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 42.02  E-value: 9.82e-04
                         10        20
                 ....*....|....*....|....*...
gi 808369080  17 EFDYIVVGGGTAGLAVAARLSEDASVTV 44
Cdd:COG0029    4 KTDVLVIGSGIAGLSAALKLAERGRVTL 31
PRK06370 PRK06370
FAD-containing oxidoreductase;
18-51 1.09e-03

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 41.73  E-value: 1.09e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 808369080  18 FDYIVVGGGTAGLAVAARLSEdASVTVGVIEAGL 51
Cdd:PRK06370   6 YDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL 38
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
16-50 1.71e-03

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 41.04  E-value: 1.71e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 808369080  16 TEFDYIVVGGGTAGLAVAARLSED-ASVTvgVIEAG 50
Cdd:COG0665    1 ATADVVVIGGGIAGLSTAYHLARRgLDVT--VLERG 34
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
16-49 2.65e-03

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 40.51  E-value: 2.65e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 808369080  16 TEFDYIVVGGGTAGLAVAARLSEDASVTVGVIEA 49
Cdd:COG0579    3 EMYDVVIIGAGIVGLALARELSRYEDLKVLVLEK 36
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
16-52 2.81e-03

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 40.46  E-value: 2.81e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 808369080  16 TEFDYIVVGGGTAGLAVAARLSE-DASVTvgVIEAGLW 52
Cdd:COG1249    2 KDYDLVVIGAGPGGYVAAIRAAQlGLKVA--LVEKGRL 37
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
19-79 2.98e-03

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 40.09  E-value: 2.98e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 808369080   19 DYIVVGGGTAGLAVAARLSEDA-SVTVGVIEAGlwrpedPKINYPafigqslmnPEYDWCLE 79
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLAAAKpGLSVVLIEPG------PSLLRP---------NNYVWSDE 47
PLN02661 PLN02661
Putative thiazole synthesis
14-48 3.53e-03

Putative thiazole synthesis


Pssm-ID: 178267  Cd Length: 357  Bit Score: 39.81  E-value: 3.53e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 808369080  14 EFTEFDYIVVGGGTAGLAVAARLSEDASVTVGVIE 48
Cdd:PLN02661  89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
16-53 6.05e-03

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 39.46  E-value: 6.05e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 808369080  16 TEFDYIVVGGGTAGLAVAARLSEdASVTVGVIEA-----GLWR 53
Cdd:COG2072    5 EHVDVVVIGAGQAGLAAAYHLRR-AGIDFVVLEKaddvgGTWR 46
PRK11728 PRK11728
L-2-hydroxyglutarate oxidase;
18-51 6.65e-03

L-2-hydroxyglutarate oxidase;


Pssm-ID: 183292 [Multi-domain]  Cd Length: 393  Bit Score: 39.03  E-value: 6.65e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 808369080  18 FDYIVVGGGTAGLAVAARLSE---DASVTV----------------GVIEAGL 51
Cdd:PRK11728   3 YDFVIIGGGIVGLSTAMQLQErypGARIAVlekesgparhqtghnsGVIHAGV 55
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
19-50 8.64e-03

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 38.53  E-value: 8.64e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 808369080   19 DYIVVGGGTAGLAVAARLSEdASVTVGVIEAG 50
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERG 31
PLN02463 PLN02463
lycopene beta cyclase
18-98 9.44e-03

lycopene beta cyclase


Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 38.93  E-value: 9.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808369080  18 FDYIVVGGGTAGLAVAARLSEdASVTVGVIEaglwrPEdPKINYPAFIGQslmnpeydWCLETEPQQHSNGRKYIWPRGK 97
Cdd:PLN02463  29 VDLVVVGGGPAGLAVAQQVSE-AGLSVCCID-----PS-PLSIWPNNYGV--------WVDEFEALGLLDCLDTTWPGAV 93

                 .
gi 808369080  98 V 98
Cdd:PLN02463  94 V 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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