NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958657035|ref|XP_038941339|]
View 

B9 domain-containing protein 1 isoform X4 [Rattus norvegicus]

Protein Classification

B9 domain-containing protein( domain architecture ID 6294)

B9 domain-containing protein may be a component of the tectonic-like complex, which is localized at the transition zone of primary cilia, acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes

Gene Ontology:  GO:0060271

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
B9-C2 super family cl06268
Ciliary basal body-associated, B9 protein; The B9-C2 domain is found in proteins associated ...
11-47 3.44e-11

Ciliary basal body-associated, B9 protein; The B9-C2 domain is found in proteins associated with the ciliary basal body. B9 domains were identified as a specific family of C2 domains. There are three sub-families represented by this family, notably, Mks1-Xbx7, Stumpy-Tza1 and Tza2 groups of proteins. Mutations in human Mks1 result in the developmental disorder Mechler-Gruber syndrome; mutations in mouse Stumpy lead to perinatal hydrocephalus and severe polycystic kidney disease. All the three distinct types of B9-C2 proteins cooperatively localize to the basal body or centrosome of cilia.


The actual alignment was detected with superfamily member pfam07162:

Pssm-ID: 462108  Cd Length: 165  Bit Score: 57.56  E-value: 3.44e-11
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1958657035  11 LMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGHK 47
Cdd:pfam07162   1 LHVIGQIESAEGFPYDNLFCKYELVLGPDWKLVSGLL 37
 
Name Accession Description Interval E-value
B9-C2 pfam07162
Ciliary basal body-associated, B9 protein; The B9-C2 domain is found in proteins associated ...
11-47 3.44e-11

Ciliary basal body-associated, B9 protein; The B9-C2 domain is found in proteins associated with the ciliary basal body. B9 domains were identified as a specific family of C2 domains. There are three sub-families represented by this family, notably, Mks1-Xbx7, Stumpy-Tza1 and Tza2 groups of proteins. Mutations in human Mks1 result in the developmental disorder Mechler-Gruber syndrome; mutations in mouse Stumpy lead to perinatal hydrocephalus and severe polycystic kidney disease. All the three distinct types of B9-C2 proteins cooperatively localize to the basal body or centrosome of cilia.


Pssm-ID: 462108  Cd Length: 165  Bit Score: 57.56  E-value: 3.44e-11
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1958657035  11 LMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGHK 47
Cdd:pfam07162   1 LHVIGQIESAEGFPYDNLFCKYELVLGPDWKLVSGLL 37
 
Name Accession Description Interval E-value
B9-C2 pfam07162
Ciliary basal body-associated, B9 protein; The B9-C2 domain is found in proteins associated ...
11-47 3.44e-11

Ciliary basal body-associated, B9 protein; The B9-C2 domain is found in proteins associated with the ciliary basal body. B9 domains were identified as a specific family of C2 domains. There are three sub-families represented by this family, notably, Mks1-Xbx7, Stumpy-Tza1 and Tza2 groups of proteins. Mutations in human Mks1 result in the developmental disorder Mechler-Gruber syndrome; mutations in mouse Stumpy lead to perinatal hydrocephalus and severe polycystic kidney disease. All the three distinct types of B9-C2 proteins cooperatively localize to the basal body or centrosome of cilia.


Pssm-ID: 462108  Cd Length: 165  Bit Score: 57.56  E-value: 3.44e-11
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1958657035  11 LMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGHK 47
Cdd:pfam07162   1 LHVIGQIESAEGFPYDNLFCKYELVLGPDWKLVSGLL 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH