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Conserved domains on  [gi|1958648417|ref|XP_038941841|]
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lipid droplet assembly factor 1 isoform X2 [Rattus norvegicus]

Protein Classification

lipid droplet assembly factor 1( domain architecture ID 11240306)

lipid droplet assembly factor 1 (LDAF1) plays an important role in the formation of lipid droplets (LD) which are storage organelles at the center of lipid and energy homeostasis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Promethin pfam16015
Promethin;
18-134 8.32e-19

Promethin;


:

Pssm-ID: 464974  Cd Length: 106  Bit Score: 76.45  E-value: 8.32e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648417  18 RKLGLLLESFQNNSKVVAfmkspVGRFLDRHPFLVLTVLMFVTMSAIPVGFFLLIVVLTSLGALMGAILLEGThstqglV 97
Cdd:pfam16015   1 RTLDRVLPPETRNRAYEA-----LGAFADERPLLAAFLLIQLALSLLPLLLFLGFALSTALFALVGALLFEGF------W 69

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958648417  98 ISVCGLSLLCILCGLGFVSLALSGITMMSYVVVSCLM 134
Cdd:pfam16015  70 IGVALLVLVPVLFGTGSLALFVWVWALGSYVVLRWLY 106
 
Name Accession Description Interval E-value
Promethin pfam16015
Promethin;
18-134 8.32e-19

Promethin;


Pssm-ID: 464974  Cd Length: 106  Bit Score: 76.45  E-value: 8.32e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648417  18 RKLGLLLESFQNNSKVVAfmkspVGRFLDRHPFLVLTVLMFVTMSAIPVGFFLLIVVLTSLGALMGAILLEGThstqglV 97
Cdd:pfam16015   1 RTLDRVLPPETRNRAYEA-----LGAFADERPLLAAFLLIQLALSLLPLLLFLGFALSTALFALVGALLFEGF------W 69

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958648417  98 ISVCGLSLLCILCGLGFVSLALSGITMMSYVVVSCLM 134
Cdd:pfam16015  70 IGVALLVLVPVLFGTGSLALFVWVWALGSYVVLRWLY 106
 
Name Accession Description Interval E-value
Promethin pfam16015
Promethin;
18-134 8.32e-19

Promethin;


Pssm-ID: 464974  Cd Length: 106  Bit Score: 76.45  E-value: 8.32e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648417  18 RKLGLLLESFQNNSKVVAfmkspVGRFLDRHPFLVLTVLMFVTMSAIPVGFFLLIVVLTSLGALMGAILLEGThstqglV 97
Cdd:pfam16015   1 RTLDRVLPPETRNRAYEA-----LGAFADERPLLAAFLLIQLALSLLPLLLFLGFALSTALFALVGALLFEGF------W 69

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958648417  98 ISVCGLSLLCILCGLGFVSLALSGITMMSYVVVSCLM 134
Cdd:pfam16015  70 IGVALLVLVPVLFGTGSLALFVWVWALGSYVVLRWLY 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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