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Conserved domains on  [gi|1958776096|ref|XP_038965741|]
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ubiquitin carboxyl-terminal hydrolase 45 isoform X4 [Rattus norvegicus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 10245587)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

EC:  3.4.19.12
Gene Ontology:  GO:0004843|GO:0016579
PubMed:  10603300

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
339-563 6.19e-71

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 229.20  E-value: 6.19e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 339 VCFSEGKHTKLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggv 417
Cdd:cd02667    82 MCESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK------------------- 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 418 ytnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRG 496
Cdd:cd02667   140 ---AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRS 216
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776096 497 GHYTAYVKVRVPSRKLSECITGRKTAPGlKEADSelgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 563
Cdd:cd02667   217 GHYVAYVKVRPPQQRLSDLTKSKPAADE-AGPGS---GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
11-141 9.13e-28

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 112.87  E-value: 9.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  11 QLHSCMKEaekgplSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkk 90
Cdd:cd02667    23 ALRELLSE------TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT----------------------------- 67
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958776096  91 vkaygkegvkmnFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 141
Cdd:cd02667    68 ------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
339-563 6.19e-71

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 229.20  E-value: 6.19e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 339 VCFSEGKHTKLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggv 417
Cdd:cd02667    82 MCESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK------------------- 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 418 ytnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRG 496
Cdd:cd02667   140 ---AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRS 216
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776096 497 GHYTAYVKVRVPSRKLSECITGRKTAPGlKEADSelgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 563
Cdd:cd02667   217 GHYVAYVKVRPPQQRLSDLTKSKPAADE-AGPGS---GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
365-562 9.31e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 119.08  E-value: 9.31e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 365 TTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKrkcqketssaerkaggvytNARKQLLISAVPAILILHLKRFHQA 444
Cdd:pfam00443 157 AELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-------------------DAIKQLKISRLPPVLIIHLKRFSYN 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 445 GLSLRKVNRHVDFPLTLDLAPFCAATcKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktapg 524
Cdd:pfam00443 218 RSTWEKLNTEVEFPLELDLSRYLAEE-LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK-------------------- 276
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958776096 525 lkeadSELGGHWVHVSDTYVQVVPESRA-LSAQAYLLFY 562
Cdd:pfam00443 277 -----AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
11-141 9.13e-28

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 112.87  E-value: 9.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  11 QLHSCMKEaekgplSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkk 90
Cdd:cd02667    23 ALRELLSE------TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT----------------------------- 67
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958776096  91 vkaygkegvkmnFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 141
Cdd:cd02667    68 ------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
40-564 5.24e-24

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 106.89  E-value: 5.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  40 FKGFQQQDSQELLHHLLDAVRtEETKRIQasILKAFNNPTTKTADEETRKKV-KAYGKEGVKMN--FIDRIFIGELTSTV 116
Cdd:COG5560   350 FSGYDQQDSQEFIAFLLDGLH-EDLNRII--KKPYTSKPDLSPGDDVVVKKKaKECWWEHLKRNdsIITDLFQGMYKSTL 426
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 117 MCEECANISTMKDPFIDISLPIIEERV-SKPVLLGKMSKCRSLQETDQDHNKGTVTVENTHPPRAAK------------- 182
Cdd:COG5560   427 TCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKlgcfeikvmciyy 506
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 183 ----KHSSPKDKTLLshdrKHLRKW-------PSEEERTVGTHPNSENS--EASPLAGILSNEASLNespTEGSERDTSL 249
Cdd:COG5560   507 ggnyNMLEPADKVLL----QDIPQTdfvylyeTNDNGIEVPVVHLRIEKgyKSKRLFGDPFLQLNVL---IKASIYDKLV 579
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 250 ESSVDADSEASepevAYKPSVLLRSSGDPGAHGEQHPhlplASELPHTKETHDCDEEMAEAMAELHLSGTVTGNRDfHRE 329
Cdd:COG5560   580 KEFEELLVLVE----MKKTDVDLVSEQVRLLREESSP----SSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCE-WEE 650
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 330 KQPLNVPNNVCFSEGKHTKLHSaqnafqtlsqsyvttsKECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKRkcqketss 409
Cdd:COG5560   651 KRYLSLFSYDPLWTIREIGAAE----------------RTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQ-------- 706
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 410 aerkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLT-LDLAPFCAATcknisVGEKVLYGLYGIV 488
Cdd:COG5560   707 -----------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV-----DDPRLIYDLYAVD 770
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958776096 489 EHSGSMRGGHYTAYVKvrvpsrklsecitgrktapglKEADselgGHWVHVSDTYVQVVPESRALSAQAYLLFYER 564
Cdd:COG5560   771 NHYGGLSGGHYTAYAR---------------------NFAN----NGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
8-186 9.20e-14

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 72.48  E-value: 9.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096   8 LFRQLHscmKEAEKGPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEEtkriqasilkafnNPTTKTADEet 87
Cdd:pfam00443  54 LFKALQ---KNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDL-------------NGNHSTENE-- 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  88 rkkvkaygkegvkmNFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIE-ERVSKPVLLGKMSKCRSLQETDQDHN 166
Cdd:pfam00443 116 --------------SLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGdSAELKTASLQICFLQFSKLEELDDEE 181
                         170       180
                  ....*....|....*....|
gi 1958776096 167 KgtVTVENTHPPRAAKKHSS 186
Cdd:pfam00443 182 K--YYCDKCGCKQDAIKQLK 199
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
339-563 6.19e-71

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 229.20  E-value: 6.19e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 339 VCFSEGKHTKLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggv 417
Cdd:cd02667    82 MCESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK------------------- 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 418 ytnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRG 496
Cdd:cd02667   140 ---AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRS 216
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776096 497 GHYTAYVKVRVPSRKLSECITGRKTAPGlKEADSelgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 563
Cdd:cd02667   217 GHYVAYVKVRPPQQRLSDLTKSKPAADE-AGPGS---GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
364-563 5.51e-34

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 129.53  E-value: 5.51e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 364 VTTSKECSVQSCLYQFTSMELLMGNNKLLCEdctekkrkcqketssaerkaGGVYTNARKQLLISAVPAILILHLKRFHQ 443
Cdd:cd02257    93 VKGLPQVSLEDCLEKFFKEEILEGDNCYKCE--------------------KKKKQEATKRLKIKKLPPVLIIHLKRFSF 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 444 AGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEK-VLYGLYGIVEHSG-SMRGGHYTAYVKVRVPsrklsecitgrk 520
Cdd:cd02257   153 NEDgTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGsYKYELVAVVVHSGtSADSGHYVAYVKDPSD------------ 220
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1958776096 521 tapglkeadselgGHWVHVSDTYVQVVPESRAL-----SAQAYLLFYE 563
Cdd:cd02257   221 -------------GKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
371-562 4.15e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 122.77  E-value: 4.15e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 371 SVQSCLYQFTSMELLMGNNKLLCEDCTEKkrkcqketssaerkaggvyTNARKQLLISAVPAILILHLKRFhqAGLSLRK 450
Cdd:cd02661   163 SLEDALEQFTKPEQLDGENKYKCERCKKK-------------------VKASKQLTIHRAPNVLTIHLKRF--SNFRGGK 221
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 451 VNRHVDFPLTLDLAPFCAAtckniSVGEKVLYGLYGIVEHSG-SMRGGHYTAYVkvrvpsrklsecitgrKTAPGLkead 529
Cdd:cd02661   222 INKQISFPETLDLSPYMSQ-----PNDGPLKYKLYAVLVHSGfSPHSGHYYCYV----------------KSSNGK---- 276
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1958776096 530 selgghWVHVSDTYVQVVPESRALSAQAYLLFY 562
Cdd:cd02661   277 ------WYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
368-563 5.12e-31

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 120.47  E-value: 5.12e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 368 KECSVQSCLYQFTSMELLMGNNKLLCEDCtEKKRKcqketssaerkaggvytnARKQLLISAVPAILILHLKRFHQAGLS 447
Cdd:cd02674    82 PKVTLEDCLRLFTKEETLDGDNAWKCPKC-KKKRK------------------ATKKLTISRLPKVLIIHLKRFSFSRGS 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 448 LRKVNRHVDFPLT-LDLAPFCAATCKNISvgekVLYGLYGIVEHSGSMRGGHYTAYVKVRVPSRklsecitgrktapglk 526
Cdd:cd02674   143 TRKLTTPVTFPLNdLDLTPYVDTRSFTGP----FKYDLYAVVNHYGSLNGGHYTAYCKNNETND---------------- 202
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1958776096 527 eadselgghWVHVSDTYVQVVPESRALSAQAYLLFYE 563
Cdd:cd02674   203 ---------WYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
365-562 9.31e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 119.08  E-value: 9.31e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 365 TTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKrkcqketssaerkaggvytNARKQLLISAVPAILILHLKRFHQA 444
Cdd:pfam00443 157 AELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-------------------DAIKQLKISRLPPVLIIHLKRFSYN 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 445 GLSLRKVNRHVDFPLTLDLAPFCAATcKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktapg 524
Cdd:pfam00443 218 RSTWEKLNTEVEFPLELDLSRYLAEE-LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK-------------------- 276
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958776096 525 lkeadSELGGHWVHVSDTYVQVVPESRA-LSAQAYLLFY 562
Cdd:pfam00443 277 -----AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
11-141 9.13e-28

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 112.87  E-value: 9.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  11 QLHSCMKEaekgplSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkk 90
Cdd:cd02667    23 ALRELLSE------TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT----------------------------- 67
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958776096  91 vkaygkegvkmnFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 141
Cdd:cd02667    68 ------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
373-562 1.57e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 110.54  E-value: 1.57e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 373 QSCLYQFTSMELLmGNNKLLCEDCtekkrkcqketssaerkagGVYTNARKQLLISAVPAILILHLKRF-HQAGLSLRKV 451
Cdd:cd02660   179 SDCLDRFTRPEKL-GDFAYKCSGC-------------------GSTQEATKQLSIKKLPPVLCFQLKRFeHSLNKTSRKI 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 452 NRHVDFPLTLDLAPFCAATCKNISVGE----KVLYGLYGIVEHSGSMRGGHYTAYVKVRvpsrklsecitgrktapglke 527
Cdd:cd02660   239 DTYVQFPLELNMTPYTSSSIGDTQDSNsldpDYTYDLFAVVVHKGTLDTGHYTAYCRQG--------------------- 297
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1958776096 528 adselGGHWVHVSDTYVQVVPESRALSAQAYLLFY 562
Cdd:cd02660   298 -----DGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
40-564 5.24e-24

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 106.89  E-value: 5.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  40 FKGFQQQDSQELLHHLLDAVRtEETKRIQasILKAFNNPTTKTADEETRKKV-KAYGKEGVKMN--FIDRIFIGELTSTV 116
Cdd:COG5560   350 FSGYDQQDSQEFIAFLLDGLH-EDLNRII--KKPYTSKPDLSPGDDVVVKKKaKECWWEHLKRNdsIITDLFQGMYKSTL 426
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 117 MCEECANISTMKDPFIDISLPIIEERV-SKPVLLGKMSKCRSLQETDQDHNKGTVTVENTHPPRAAK------------- 182
Cdd:COG5560   427 TCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKlgcfeikvmciyy 506
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 183 ----KHSSPKDKTLLshdrKHLRKW-------PSEEERTVGTHPNSENS--EASPLAGILSNEASLNespTEGSERDTSL 249
Cdd:COG5560   507 ggnyNMLEPADKVLL----QDIPQTdfvylyeTNDNGIEVPVVHLRIEKgyKSKRLFGDPFLQLNVL---IKASIYDKLV 579
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 250 ESSVDADSEASepevAYKPSVLLRSSGDPGAHGEQHPhlplASELPHTKETHDCDEEMAEAMAELHLSGTVTGNRDfHRE 329
Cdd:COG5560   580 KEFEELLVLVE----MKKTDVDLVSEQVRLLREESSP----SSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCE-WEE 650
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 330 KQPLNVPNNVCFSEGKHTKLHSaqnafqtlsqsyvttsKECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKRkcqketss 409
Cdd:COG5560   651 KRYLSLFSYDPLWTIREIGAAE----------------RTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQ-------- 706
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 410 aerkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLT-LDLAPFCAATcknisVGEKVLYGLYGIV 488
Cdd:COG5560   707 -----------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV-----DDPRLIYDLYAVD 770
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958776096 489 EHSGSMRGGHYTAYVKvrvpsrklsecitgrktapglKEADselgGHWVHVSDTYVQVVPESRALSAQAYLLFYER 564
Cdd:COG5560   771 NHYGGLSGGHYTAYAR---------------------NFAN----NGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
371-565 3.40e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 100.79  E-value: 3.40e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 371 SVQSCLYQFTSMELLMGNNKLLCEDCTEKKRkcqketssaerkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLR- 449
Cdd:cd02659   152 NLEESLDAYVQGETLEGDNKYFCEKCGKKVD-------------------AEKGVCFKKLPPVLTLQLKRFEFDFETMMr 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 450 -KVNRHVDFPLTLDLAPFCAATCKNISVGEKV------LYGLYGIVEHSGSMRGGHYTAYVKVRVPSR-------KLSEC 515
Cdd:cd02659   213 iKINDRFEFPLELDMEPYTEKGLAKKEGDSEKkdsesyIYELHGVLVHSGDAHGGHYYSYIKDRDDGKwykfnddVVTPF 292
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958776096 516 itgrktapGLKEADSE-LGGhwvHVSDTYVQVVPESRALSAQAYLLFYERI 565
Cdd:cd02659   293 --------DPNDAEEEcFGG---EETQKTYDSGPRAFKRTTNAYMLFYERK 332
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
350-563 5.39e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 89.35  E-value: 5.39e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 350 HSAQNAFQ----TLSQSY-----VTTSKECSVQSC------LYQFTSMELLMGNNKLLCEDCTEKKrkCQKETSSAERKA 414
Cdd:cd02662    35 QDAHELFQvlleTLEQLLkfpfdGLLASRIVCLQCgesskvRYESFTMLSLPVPNQSSGSGTTLEH--CLDDFLSTEIID 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 415 GgvYTNARKQLLISAVPAILILHLKR--FHQAGLSLRKvNRHVDFPLTLDlapfcaatcknisvgeKVLYGLYGIVEHSG 492
Cdd:cd02662   113 D--YKCDRCQTVIVRLPQILCIHLSRsvFDGRGTSTKN-SCKVSFPERLP----------------KVLYRLRAVVVHYG 173
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958776096 493 SMRGGHYTAYVKVRVPSRKLSECITGRktapgLKEADSELGGHWVHVSDTYVQVVPESRAL-SAQAYLLFYE 563
Cdd:cd02662   174 SHSSGHYVCYRRKPLFSKDKEPGSFVR-----MREGPSSTSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
368-563 3.15e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 76.58  E-value: 3.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 368 KECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKrkcqketssaerkaggvytNARKQLLISAVPAILILHLKRFHQAGls 447
Cdd:cd02663   145 QNTSITSCLRQFSATETLCGRNKFYCDECCSLQ-------------------EAEKRMKIKKLPKILALHLKRFKYDE-- 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 448 lrKVNRH------VDFPLTLDLapfcaatCKNISVGEKV--LYGLYGIVEHSGS--MRGgHYTAYVKVrvpsrklsecit 517
Cdd:cd02663   204 --QLNRYiklfyrVVFPLELRL-------FNTTDDAENPdrLYELVAVVVHIGGgpNHG-HYVSIVKS------------ 261
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958776096 518 grktapglkeadselGGHWVHVSDTYVQVVPES--------RALSAQAYLLFYE 563
Cdd:cd02663   262 ---------------HGGWLLFDDETVEKIDENaveeffgdSPNQATAYVLFYQ 300
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
427-565 8.51e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 74.84  E-value: 8.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 427 ISAVPAILILHLKRFHQAGlSLRKVNRHVDFPLTLDLAPfcaatCKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKVr 506
Cdd:COG5533   176 FVKLPKILTIQLKRFANLG-GNQKIDTEVDEKFELPVKH-----DQILNIVKETYYDLVGFVLHQGSLEGGHYIAYVKK- 248
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958776096 507 vpsrklsecitgrktapglkeadselGGHWVHVSDTYVQVVPESRAL---SAQAYLLFYERI 565
Cdd:COG5533   249 --------------------------GGKWEKANDSDVTPVSEEEAInekAKNAYLYFYERI 284
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
8-186 9.20e-14

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 72.48  E-value: 9.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096   8 LFRQLHscmKEAEKGPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEEtkriqasilkafnNPTTKTADEet 87
Cdd:pfam00443  54 LFKALQ---KNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDL-------------NGNHSTENE-- 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  88 rkkvkaygkegvkmNFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIE-ERVSKPVLLGKMSKCRSLQETDQDHN 166
Cdd:pfam00443 116 --------------SLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGdSAELKTASLQICFLQFSKLEELDDEE 181
                         170       180
                  ....*....|....*....|
gi 1958776096 167 KgtVTVENTHPPRAAKKHSS 186
Cdd:pfam00443 182 K--YYCDKCGCKQDAIKQLK 199
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
378-504 1.06e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 72.23  E-value: 1.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 378 QFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggvYTNARKQLLISAVPAILILHLKRFHQAGLS------LRKV 451
Cdd:cd02671   188 QFASVERIVGEDKYFCENCHH-------------------YTEAERSLLFDKLPEVITIHLKCFAANGSEfdcyggLSKV 248
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958776096 452 NRHVDFPLTLdlapfcaaTCKNISVGEKV-LYGLYGIVEHSG-SMRGGHYTAYVK 504
Cdd:cd02671   249 NTPLLTPLKL--------SLEEWSTKPKNdVYRLFAVVMHSGaTISSGHYTAYVR 295
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
371-504 3.08e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 70.91  E-value: 3.08e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 371 SVQSCLYQFTSMELLMGNNKLLCEDCTEKkrkcqketssaerkaggvyTNARKQLLISAVPAILILHLKR--FHQAGLSL 448
Cdd:cd02668   157 TLEECIDEFLKEEQLTGDNQYFCESCNSK-------------------TDATRRIRLTTLPPTLNFQLLRfvFDRKTGAK 217
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776096 449 RKVNRHVDFPLTLDLAPFCAATCKNISVgekvlYGLYGIVEHSG-SMRGGHYTAYVK 504
Cdd:cd02668   218 KKLNASISFPEILDMGEYLAESDEGSYV-----YELSGVLIHQGvSAYSGHYIAHIK 269
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
370-563 3.12e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 70.98  E-value: 3.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 370 CSVQSCLYQFTSMELLMGNNKLLCEDCtekKRKCQKETSSAerkaggvytnarkqllISAVPAILILHLKRFH--QAGLS 447
Cdd:cd02664   134 PSVQDLLNYFLSPEKLTGDNQYYCEKC---ASLQDAEKEMK----------------VTGAPEYLILTLLRFSydQKTHV 194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 448 LRKVNRHVDFPLTLDLaPFCAATCKNISVGEK---------------VLYGLYGIVEHSG-SMRGGHYTAYVKVRVPSRK 511
Cdd:cd02664   195 REKIMDNVSINEVLSL-PVRVESKSSESPLEKkeeesgddgelvtrqVHYRLYAVVVHSGySSESGHYFTYARDQTDADS 273
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958776096 512 lseciTGRKTAPGLKEADSELGGHWVHVSDTYV-QVVPE------SRALSAQAYLLFYE 563
Cdd:cd02664   274 -----TGQECPEPKDAEENDESKNWYLFNDSRVtFSSFEsvqnvtSRFPKDTPYILFYE 327
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
371-564 4.20e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 69.13  E-value: 4.20e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  371 SVQSCLYQFTSMELLMGNNKLLCEDCTekkrkcqketssaerkaggvYTNARKQLLISAVPAILILHLKRFHQAGLS--L 448
Cdd:COG5077    339 NLQESFRRYIQVETLDGDNRYNAEKHG--------------------LQDAKKGVIFESLPPVLHLQLKRFEYDFERdmM 398
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  449 RKVNRHVDFPLTLDLAPFCAATCKNiSVGEKVLYGLYGIVEHSGSMRGGHYTAYVKVRVPSRKLSECITgRKTAPGLKEA 528
Cdd:COG5077    399 VKINDRYEFPLEIDLLPFLDRDADK-SENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDT-RVTRATEKEV 476
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1958776096  529 DSE-LGGHWVHvSDTYVQVVPESRALSaqAYLLFYER 564
Cdd:COG5077    477 LEEnFGGDHPY-KDKIRDHSGIKRFMS--AYMLVYLR 510
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
398-563 2.21e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 65.04  E-value: 2.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 398 EKKRKCQKETSSAERKAGGVYTnarKQLLISAVPAILILHLKRFHQAGLSLR--KVNRHVDFPLTLDLAPFCAATCknis 475
Cdd:cd02657   167 KKGLEEEIEKHSPTLGRDAIYT---KTSRISRLPKYLTVQFVRFFWKRDIQKkaKILRKVKFPFELDLYELCTPSG---- 239
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 476 vgekvLYGLYGIVEHSG-SMRGGHYTAYVKvrvpsrklsecitgrktapglkeadSELGGHWVHVSDTYVQVVPESRALS 554
Cdd:cd02657   240 -----YYELVAVITHQGrSADSGHYVAWVR-------------------------RKNDGKWIKFDDDKVSEVTEEDILK 289
                         170
                  ....*....|....*.
gi 1958776096 555 AQ-------AYLLFYE 563
Cdd:cd02657   290 LSgggdwhiAYILLYK 305
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
43-138 1.83e-09

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 58.65  E-value: 1.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  43 FQQQDSQELLHHLLDAVRTEETKRIQASILKAFNNpttktadeetrkkvkaygkegvkmNFIDRIFIGELTSTVMCEECA 122
Cdd:cd02257    20 SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLK------------------------SLIHDLFGGKLESTIVCLECG 75
                          90
                  ....*....|....*.
gi 1958776096 123 NISTMKDPFIDISLPI 138
Cdd:cd02257    76 HESVSTEPELFLSLPL 91
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
8-160 1.66e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 56.16  E-value: 1.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096   8 LFRQLHSCMKEAEK--GPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLdavrteetkriqasilkafnNPTTKTADE 85
Cdd:cd02663    26 CLKDLFESISEQKKrtGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLL--------------------NEIAEILDA 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  86 EtRKKVKAYGKEGVKM------NFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPiIEERVSKPVLLGKMS------ 153
Cdd:cd02663    86 E-RKAEKANRKLNNNNnaepqpTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSID-VEQNTSITSCLRQFSatetlc 163
                         170
                  ....*....|....*
gi 1958776096 154 --------KCRSLQE 160
Cdd:cd02663   164 grnkfycdECCSLQE 178
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
44-146 9.21e-07

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 49.98  E-value: 9.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  44 QQQDSQELLHHLLDAVRteetkriqasilkafnnpttktadeetrkkvkaygkegvkmNFIDRIFIGELTSTVMCEECAN 123
Cdd:cd02674    21 DQQDAQEFLLFLLDGLH-----------------------------------------SIIVDLFQGQLKSRLTCLTCGK 59
                          90       100
                  ....*....|....*....|...
gi 1958776096 124 ISTMKDPFIDISLPIIEERVSKP 146
Cdd:cd02674    60 TSTTFEPFTYLSLPIPSGSGDAP 82
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
26-145 1.25e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 50.66  E-value: 1.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  26 PKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRteetkriqasilkafnnpttktadeetrkkvkaygkegvkmNFID 105
Cdd:cd02671    86 PRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQ-----------------------------------------ELVE 124
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1958776096 106 RIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSK 145
Cdd:cd02671   125 KDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSK 164
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
23-138 7.68e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 48.04  E-value: 7.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096  23 PLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAvrteetkrIQASILKAFNNpttktaDEETRKKVKAYgkegvkmN 102
Cdd:cd02661    64 GSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDA--------MQKACLDRFKK------LKAVDPSSQET-------T 122
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1958776096 103 FIDRIFIGELTSTVMCEECANISTMKDPFIDISLPI 138
Cdd:cd02661   123 LVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDI 158
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
427-563 1.65e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 46.37  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 427 ISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLTLDLAPFCAAT---CKNISVGEKVLYG--------------LYGIVE 489
Cdd:cd02670    95 FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDpraCSKCQLECRVCYDdkdfsptcgkfklsLCSAVC 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 490 HSG-SMRGGHYTAYVKvrvpsrklseciTGRKTAPGLKEADSElgGHWVHVSD-------TYVQVVPESRALSaQAYLLF 561
Cdd:cd02670   175 HRGtSLETGHYVAFVR------------YGSYSLTETDNEAYN--AQWVFFDDmadrdgvSNGFNIPAARLLE-DPYMLF 239

                  ..
gi 1958776096 562 YE 563
Cdd:cd02670   240 YQ 241
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
416-563 5.00e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 45.39  E-value: 5.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 416 GVYTNARKQLLISAVPAILILHLKRFH-QAGLSLRKVNRHVDFPLTLDLAPfcaatcknisvgekvlYGLYGIVEHSG-S 493
Cdd:cd02658   201 KEKTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELGPGK----------------YELIAFISHKGtS 264
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096 494 MRGGHYTAYVKvrvpsrklsecitgrktapglKEADSElgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 563
Cdd:cd02658   265 VHSGHYVAHIK---------------------KEIDGE--GKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
4-129 3.53e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 39.62  E-value: 3.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776096   4 NSRFLFRQLHSCMKEAEKG--PLSPKVLFNQLCQKAPRFK------GFQQQDSQELLhhlldavrteetkriqASILKAF 75
Cdd:cd02657    41 SSDNLTNALRDLFDTMDKKqePVPPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECW----------------SQLLSVL 104
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958776096  76 NNpttktadeetrkkvkAYGKEGVKMNFIDRIFIGELTSTVMCEECANISTMKD 129
Cdd:cd02657   105 SQ---------------KLPGAGSKGSFIDQLFGIELETKMKCTESPDEEEVST 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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