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Conserved domains on  [gi|55741843|ref|NP_001007148|]
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SUN domain-containing protein 1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sad1_UNC pfam07738
Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that ...
 621-755 5.80e-57

Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.


:

Pssm-ID: 400199  Cd Length: 130  Bit Score: 190.19  E-value: 5.80e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   621 LWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTLsptgnISSAPRDFAVYGLETEYQEEGQ 700
Cdd:pfam07738   1 LNYEAKPPKVILQPDYMPGPCWSFKGSRGFVVIELSEFIIVEAITLEHVEKSV-----FSSAPKDFEVSGSDRYPTTKWV 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 55741843   701 PLGRFTYDQEGDSLQMFHTLERPDQGFQIVELRVLSNWGHPEYTCLYRFRVHGEP 755
Cdd:pfam07738  76 LLGEFSYDLDGKTIQTFQLENPPDIWVKYVKLRILSNYGNEHYTCLYRFRVHGTV 130
MRP pfam09387
Mitochondrial RNA binding protein MRP; MRP1 and MRP2 are mitochondrial RNA binding proteins ...
 64-259 8.28e-57

Mitochondrial RNA binding protein MRP; MRP1 and MRP2 are mitochondrial RNA binding proteins that form a heteromeric complex. The MRP1/MRP2 heterotetrameric complex binds to guide RNAs and stabilizes them in an unfolded conformation suitable for RNA-RNA hybridization. Each MRP subunit adopts a 'whirly' transcription factor fold.


:

Pssm-ID: 430576  Cd Length: 192  Bit Score: 192.09  E-value: 8.28e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843    64 AYSSGDGQTVDTHISTSRATPAKGRETRTVKQ-RSASKPAFSINHLSGKGLSSStshdsscslrsatvlrhpvldeSLIR 142
Cdd:pfam09387   1 SSAFADGSALDAMNQNRRAQSWRDRAARTQKQrRSASPPAFDIVHWSRKDISSG----------------------SLIR 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   143 eQTKVDHFWGLD----DDGDLKGGNKAATQGNGELAAEVASSNGYTCRDCRMLSARtdaLTAHSAVHGPTSRVYSRDRT- 217
Cdd:pfam09387  59 -QTKVDHFWGLDyhlpDDGDLKGGPKAAPQGNGDRAVSVALPNGYTARFCSVLEGR---LTKHEVASGPTNRVFSRDRAq 134

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55741843   218 ----------LRP----------RKAASGTFWWLgsgwYQFVTLISWLNVFLLTRCLRNICK 259
Cdd:pfam09387 135 kntytlkctsTKPaqgqsqrsnaGKAASEVFEWL----VQFVTLESWLNVFFLTRALRNICG 192
SUN1_cc1 cd21439
coiled-coil domain 1 of SUN domain-containing protein 1 and similar proteins; SUN ...
 397-450 1.90e-23

coiled-coil domain 1 of SUN domain-containing protein 1 and similar proteins; SUN domain-containing protein 1 (SUN1), also called protein unc-84 homolog A, or Sad1/unc-84 protein-like 1, is a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex which is involved in the connection between the nuclear lamina and the cytoskeleton. Besides the core SUN domain, SUN1 contains two coiled-coil domains (CC1 and CC2), which act as the intrinsic dynamic regulators for controlling the activity of the SUN domain. This model corresponds to CC1 that may function as an activation segment to release CC2-mediated inhibition of the SUN domain.


:

Pssm-ID: 410605 [Multi-domain]  Cd Length: 55  Bit Score: 93.88  E-value: 1.90e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 55741843 397 PDAKTDFLTLHHDHEVRLSSLEDVLRKLTEKSEAIQKELEETKLRAGSRDEEQP 450
Cdd:cd21439   2 PLSQTDFMAFHQEHELRISNLEDLLGKLSEKSEAIQKELEQTKLRTASGADEQQ 55
CALCOCO1 super family cl37761
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 349-512 2.59e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


The actual alignment was detected with superfamily member pfam07888:

Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 47.58  E-value: 2.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   349 DERLAELTVLLQKLQIRVDQVDDGREGLSLWVKDMvgqhlqEIGSIEPPDAKTDFLTLHHDHEVRLSSLEDVLRKLTEKS 428
Cdd:pfam07888  72 ERQRRELESRVAELKEELRQSREKHEELEEKYKEL------SASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRV 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   429 EAIQKELEETKLRA----GSRDEEQPLLDRVQ-HLELELNLLKSQLSDWQHLRSSCEQADA---RIQETV----QLMFSE 496
Cdd:pfam07888 146 LERETELERMKERAkkagAQRKEEEAERKQLQaKLQQTEEELRSLSKEFQELRNSLAQRDTqvlQLQDTIttltQKLTTA 225

                         170
                  ....*....|....*.
gi 55741843   497 DQPGGSLEWLLQKLSS 512
Cdd:pfam07888 226 HRKEAENEALLEELRS 241
 
Name Accession Description Interval E-value
Sad1_UNC pfam07738
Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that ...
 621-755 5.80e-57

Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.


Pssm-ID: 400199  Cd Length: 130  Bit Score: 190.19  E-value: 5.80e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   621 LWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTLsptgnISSAPRDFAVYGLETEYQEEGQ 700
Cdd:pfam07738   1 LNYEAKPPKVILQPDYMPGPCWSFKGSRGFVVIELSEFIIVEAITLEHVEKSV-----FSSAPKDFEVSGSDRYPTTKWV 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 55741843   701 PLGRFTYDQEGDSLQMFHTLERPDQGFQIVELRVLSNWGHPEYTCLYRFRVHGEP 755
Cdd:pfam07738  76 LLGEFSYDLDGKTIQTFQLENPPDIWVKYVKLRILSNYGNEHYTCLYRFRVHGTV 130
MRP pfam09387
Mitochondrial RNA binding protein MRP; MRP1 and MRP2 are mitochondrial RNA binding proteins ...
 64-259 8.28e-57

Mitochondrial RNA binding protein MRP; MRP1 and MRP2 are mitochondrial RNA binding proteins that form a heteromeric complex. The MRP1/MRP2 heterotetrameric complex binds to guide RNAs and stabilizes them in an unfolded conformation suitable for RNA-RNA hybridization. Each MRP subunit adopts a 'whirly' transcription factor fold.


Pssm-ID: 430576  Cd Length: 192  Bit Score: 192.09  E-value: 8.28e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843    64 AYSSGDGQTVDTHISTSRATPAKGRETRTVKQ-RSASKPAFSINHLSGKGLSSStshdsscslrsatvlrhpvldeSLIR 142
Cdd:pfam09387   1 SSAFADGSALDAMNQNRRAQSWRDRAARTQKQrRSASPPAFDIVHWSRKDISSG----------------------SLIR 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   143 eQTKVDHFWGLD----DDGDLKGGNKAATQGNGELAAEVASSNGYTCRDCRMLSARtdaLTAHSAVHGPTSRVYSRDRT- 217
Cdd:pfam09387  59 -QTKVDHFWGLDyhlpDDGDLKGGPKAAPQGNGDRAVSVALPNGYTARFCSVLEGR---LTKHEVASGPTNRVFSRDRAq 134

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55741843   218 ----------LRP----------RKAASGTFWWLgsgwYQFVTLISWLNVFLLTRCLRNICK 259
Cdd:pfam09387 135 kntytlkctsTKPaqgqsqrsnaGKAASEVFEWL----VQFVTLESWLNVFFLTRALRNICG 192
SUN1_cc1 cd21439
coiled-coil domain 1 of SUN domain-containing protein 1 and similar proteins; SUN ...
 397-450 1.90e-23

coiled-coil domain 1 of SUN domain-containing protein 1 and similar proteins; SUN domain-containing protein 1 (SUN1), also called protein unc-84 homolog A, or Sad1/unc-84 protein-like 1, is a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex which is involved in the connection between the nuclear lamina and the cytoskeleton. Besides the core SUN domain, SUN1 contains two coiled-coil domains (CC1 and CC2), which act as the intrinsic dynamic regulators for controlling the activity of the SUN domain. This model corresponds to CC1 that may function as an activation segment to release CC2-mediated inhibition of the SUN domain.


Pssm-ID: 410605 [Multi-domain]  Cd Length: 55  Bit Score: 93.88  E-value: 1.90e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 55741843 397 PDAKTDFLTLHHDHEVRLSSLEDVLRKLTEKSEAIQKELEETKLRAGSRDEEQP 450
Cdd:cd21439   2 PLSQTDFMAFHQEHELRISNLEDLLGKLSEKSEAIQKELEQTKLRTASGADEQQ 55
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 349-512 2.59e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 47.58  E-value: 2.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   349 DERLAELTVLLQKLQIRVDQVDDGREGLSLWVKDMvgqhlqEIGSIEPPDAKTDFLTLHHDHEVRLSSLEDVLRKLTEKS 428
Cdd:pfam07888  72 ERQRRELESRVAELKEELRQSREKHEELEEKYKEL------SASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRV 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   429 EAIQKELEETKLRA----GSRDEEQPLLDRVQ-HLELELNLLKSQLSDWQHLRSSCEQADA---RIQETV----QLMFSE 496
Cdd:pfam07888 146 LERETELERMKERAkkagAQRKEEEAERKQLQaKLQQTEEELRSLSKEFQELRNSLAQRDTqvlQLQDTIttltQKLTTA 225

                         170
                  ....*....|....*.
gi 55741843   497 DQPGGSLEWLLQKLSS 512
Cdd:pfam07888 226 HRKEAENEALLEELRS 241
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
349-498 9.83e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.45  E-value: 9.83e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843 349 DERLAELTVLLQKLQIRVDQVDDGREGLSLWVKdmvGQHLQEigSIEPPDAKTDFLTLHHDHEVRL-SSLEDVLRKLTEK 427
Cdd:COG4717 101 EEELEELEAELEELREELEKLEKLLQLLPLYQE---LEALEA--ELAELPERLEELEERLEELRELeEELEELEAELAEL 175

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 55741843 428 SEAIQKELEETKLRAgsRDEEQPLLDRVQHLELELNLLKSQLsdwQHLRSSCEQADARIQETVQLMFSEDQ 498
Cdd:COG4717 176 QEELEELLEQLSLAT--EEELQDLAEELEELQQRLAELEEEL---EEAQEELEELEEELEQLENELEAAAL 241
 
Name Accession Description Interval E-value
Sad1_UNC pfam07738
Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that ...
 621-755 5.80e-57

Sad1 / UNC-like C-terminal; The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.


Pssm-ID: 400199  Cd Length: 130  Bit Score: 190.19  E-value: 5.80e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   621 LWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTLsptgnISSAPRDFAVYGLETEYQEEGQ 700
Cdd:pfam07738   1 LNYEAKPPKVILQPDYMPGPCWSFKGSRGFVVIELSEFIIVEAITLEHVEKSV-----FSSAPKDFEVSGSDRYPTTKWV 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 55741843   701 PLGRFTYDQEGDSLQMFHTLERPDQGFQIVELRVLSNWGHPEYTCLYRFRVHGEP 755
Cdd:pfam07738  76 LLGEFSYDLDGKTIQTFQLENPPDIWVKYVKLRILSNYGNEHYTCLYRFRVHGTV 130
MRP pfam09387
Mitochondrial RNA binding protein MRP; MRP1 and MRP2 are mitochondrial RNA binding proteins ...
 64-259 8.28e-57

Mitochondrial RNA binding protein MRP; MRP1 and MRP2 are mitochondrial RNA binding proteins that form a heteromeric complex. The MRP1/MRP2 heterotetrameric complex binds to guide RNAs and stabilizes them in an unfolded conformation suitable for RNA-RNA hybridization. Each MRP subunit adopts a 'whirly' transcription factor fold.


Pssm-ID: 430576  Cd Length: 192  Bit Score: 192.09  E-value: 8.28e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843    64 AYSSGDGQTVDTHISTSRATPAKGRETRTVKQ-RSASKPAFSINHLSGKGLSSStshdsscslrsatvlrhpvldeSLIR 142
Cdd:pfam09387   1 SSAFADGSALDAMNQNRRAQSWRDRAARTQKQrRSASPPAFDIVHWSRKDISSG----------------------SLIR 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   143 eQTKVDHFWGLD----DDGDLKGGNKAATQGNGELAAEVASSNGYTCRDCRMLSARtdaLTAHSAVHGPTSRVYSRDRT- 217
Cdd:pfam09387  59 -QTKVDHFWGLDyhlpDDGDLKGGPKAAPQGNGDRAVSVALPNGYTARFCSVLEGR---LTKHEVASGPTNRVFSRDRAq 134

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55741843   218 ----------LRP----------RKAASGTFWWLgsgwYQFVTLISWLNVFLLTRCLRNICK 259
Cdd:pfam09387 135 kntytlkctsTKPaqgqsqrsnaGKAASEVFEWL----VQFVTLESWLNVFFLTRALRNICG 192
SUN1_cc1 cd21439
coiled-coil domain 1 of SUN domain-containing protein 1 and similar proteins; SUN ...
 397-450 1.90e-23

coiled-coil domain 1 of SUN domain-containing protein 1 and similar proteins; SUN domain-containing protein 1 (SUN1), also called protein unc-84 homolog A, or Sad1/unc-84 protein-like 1, is a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex which is involved in the connection between the nuclear lamina and the cytoskeleton. Besides the core SUN domain, SUN1 contains two coiled-coil domains (CC1 and CC2), which act as the intrinsic dynamic regulators for controlling the activity of the SUN domain. This model corresponds to CC1 that may function as an activation segment to release CC2-mediated inhibition of the SUN domain.


Pssm-ID: 410605 [Multi-domain]  Cd Length: 55  Bit Score: 93.88  E-value: 1.90e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 55741843 397 PDAKTDFLTLHHDHEVRLSSLEDVLRKLTEKSEAIQKELEETKLRAGSRDEEQP 450
Cdd:cd21439   2 PLSQTDFMAFHQEHELRISNLEDLLGKLSEKSEAIQKELEQTKLRTASGADEQQ 55
SUN_cc1 cd21435
coiled-coil domain 1 of SUN domain-containing proteins; SUN (Sad1 and UNC-84) proteins (SUN1 ...
 400-449 5.38e-10

coiled-coil domain 1 of SUN domain-containing proteins; SUN (Sad1 and UNC-84) proteins (SUN1 and SUN2) are components of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex which is involved in the connection between the nuclear lamina and the cytoskeleton. Besides the core SUN domain, SUN proteins contain two coiled-coil domains (CC1 and CC2), which act as intrinsic dynamic regulators controlling the activity of the SUN domain. The model corresponds to CC1 that functions as an activation segment to release CC2-mediated inhibition of the SUN domain.


Pssm-ID: 410603 [Multi-domain]  Cd Length: 55  Bit Score: 55.49  E-value: 5.38e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 55741843 400 KTDFLTLHHDHEVRLSSLEDVLRKLTEKSEAIQKELEETKLRAGSRDEEQ 449
Cdd:cd21435   5 QESSVKELGRLEAQLASLRQELAALTLKQEAIQKELEQTKQKTISAVGEQ 54
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 349-512 2.59e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 47.58  E-value: 2.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   349 DERLAELTVLLQKLQIRVDQVDDGREGLSLWVKDMvgqhlqEIGSIEPPDAKTDFLTLHHDHEVRLSSLEDVLRKLTEKS 428
Cdd:pfam07888  72 ERQRRELESRVAELKEELRQSREKHEELEEKYKEL------SASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRV 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843   429 EAIQKELEETKLRA----GSRDEEQPLLDRVQ-HLELELNLLKSQLSDWQHLRSSCEQADA---RIQETV----QLMFSE 496
Cdd:pfam07888 146 LERETELERMKERAkkagAQRKEEEAERKQLQaKLQQTEEELRSLSKEFQELRNSLAQRDTqvlQLQDTIttltQKLTTA 225

                         170
                  ....*....|....*.
gi 55741843   497 DQPGGSLEWLLQKLSS 512
Cdd:pfam07888 226 HRKEAENEALLEELRS 241
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
349-498 9.83e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.45  E-value: 9.83e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843 349 DERLAELTVLLQKLQIRVDQVDDGREGLSLWVKdmvGQHLQEigSIEPPDAKTDFLTLHHDHEVRL-SSLEDVLRKLTEK 427
Cdd:COG4717 101 EEELEELEAELEELREELEKLEKLLQLLPLYQE---LEALEA--ELAELPERLEELEERLEELRELeEELEELEAELAEL 175

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 55741843 428 SEAIQKELEETKLRAgsRDEEQPLLDRVQHLELELNLLKSQLsdwQHLRSSCEQADARIQETVQLMFSEDQ 498
Cdd:COG4717 176 QEELEELLEQLSLAT--EEELQDLAEELEELQQRLAELEEEL---EEAQEELEELEEELEQLENELEAAAL 241
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
336-488 1.90e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843  336 QKIASLSAQCHNHDERLAELTVLLQKLQIRVDQVDDGREGLS-----LWVKDMVGQHLQEIgsieppdaktdfltlhHDH 410
Cdd:COG4913  610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeySWDEIDVASAEREI----------------AEL 673

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55741843  411 EVRLSSLE---DVLRKLTEKSEAIQKELEETKLRAGSRDEEQPLLD-RVQHLELELNLLKSQLSDWQHLRSSC--EQADA 484
Cdd:COG4913  674 EAELERLDassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEkELEQAEEELDELQDRLEAAEDLARLElrALLEE 753


                 ....
gi 55741843  485 RIQE 488
Cdd:COG4913  754 RFAA 757
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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