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Conserved domains on  [gi|1937932311|ref|NP_001013989|]
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membrane magnesium transporter 2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MMgT super family cl10952
Membrane magnesium transporter; This entry represents a novel family of membrane magnesium ...
 29-90 1.93e-03

Membrane magnesium transporter; This entry represents a novel family of membrane magnesium transporters (MMgT). The proteins, MMgT1 and MMgT2, are localized to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg(2+) transport in the Golgi and post-Golgi organelles of epithelium-derived cells.


The actual alignment was detected with superfamily member pfam10270:

Pssm-ID: 431186  Cd Length: 117  Bit Score: 35.31  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937932311  29 SHMRLAEMKYEPLPTDIVLQTLLAFALTCYGVV-----------------HTAGDFRD---RDATSEL---KNVTFDTLR 85
Cdd:pfam10270  23 STLKNSSQSSSSLPLDITLETLVALVLVILGLVlsieklsylplgnevviSGSEYLKPiqmRKAAGEIereGENPFGELE 102


                  ....*
gi 1937932311  86 NRPSF 90
Cdd:pfam10270 103 SRPGF 107
 
Name Accession Description Interval E-value
MMgT pfam10270
Membrane magnesium transporter; This entry represents a novel family of membrane magnesium ...
 29-90 1.93e-03

Membrane magnesium transporter; This entry represents a novel family of membrane magnesium transporters (MMgT). The proteins, MMgT1 and MMgT2, are localized to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg(2+) transport in the Golgi and post-Golgi organelles of epithelium-derived cells.


Pssm-ID: 431186  Cd Length: 117  Bit Score: 35.31  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937932311  29 SHMRLAEMKYEPLPTDIVLQTLLAFALTCYGVV-----------------HTAGDFRD---RDATSEL---KNVTFDTLR 85
Cdd:pfam10270  23 STLKNSSQSSSSLPLDITLETLVALVLVILGLVlsieklsylplgnevviSGSEYLKPiqmRKAAGEIereGENPFGELE 102


                  ....*
gi 1937932311  86 NRPSF 90
Cdd:pfam10270 103 SRPGF 107
 
Name Accession Description Interval E-value
MMgT pfam10270
Membrane magnesium transporter; This entry represents a novel family of membrane magnesium ...
 29-90 1.93e-03

Membrane magnesium transporter; This entry represents a novel family of membrane magnesium transporters (MMgT). The proteins, MMgT1 and MMgT2, are localized to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg(2+) transport in the Golgi and post-Golgi organelles of epithelium-derived cells.


Pssm-ID: 431186  Cd Length: 117  Bit Score: 35.31  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937932311  29 SHMRLAEMKYEPLPTDIVLQTLLAFALTCYGVV-----------------HTAGDFRD---RDATSEL---KNVTFDTLR 85
Cdd:pfam10270  23 STLKNSSQSSSSLPLDITLETLVALVLVILGLVlsieklsylplgnevviSGSEYLKPiqmRKAAGEIereGENPFGELE 102


                  ....*
gi 1937932311  86 NRPSF 90
Cdd:pfam10270 103 SRPGF 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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