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Conserved domains on  [gi|62543525|ref|NP_001015015|]
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ubiquitin carboxyl-terminal hydrolase 1 [Rattus norvegicus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 10245588)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 3.02e-111

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 341.87  E-value: 3.02e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671 121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671 201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                       170
                ....*....|....*.
gi 62543525 584 HSGITISSGHYTASVK 599
Cdd:cd02671 280 HSGATISSGHYTAYVR 295
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
82-253 1.25e-11

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02657:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 305  Bit Score: 66.20  E-value: 1.25e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPGFkagvkhlfniisrkKEALKDDSiqkdkGSCKEDPLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNYN-----PARRGANQSSDNLTNALRDLFDTMDKKQE 61
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEEIKNLTEFSSKVEE 235
Cdd:cd02657  62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELET 128
                       170
                ....*....|....*...
gi 62543525 236 KsLQKEETGGISSTETDS 253
Cdd:cd02657 129 K-MKCTESPDEEEVSTES 145
 
Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 3.02e-111

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 341.87  E-value: 3.02e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671 121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671 201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                       170
                ....*....|....*.
gi 62543525 584 HSGITISSGHYTASVK 599
Cdd:cd02671 280 HSGATISSGHYTAYVR 295
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
81-605 1.31e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 116.77  E-value: 1.31e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525    81 VGLNNLGNTCYLNSILQVLYFCPGFKagvkhlfNIISRKKEALKDDSIQKDkgsckedplasYELICSLQSLIISveqlq 160
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFR-------DYLLRISPLSEDSRYNKD-----------INLLCALRDLFKA----- 57
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   161 asfLLNPEKYTdelATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCIlgniqetcqllkkeeiknltefsskveekslqk 240
Cdd:pfam00443  58 ---LQKNSKSS---SVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFL--------------------------------- 98
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   241 eetggisstetdstrnLDDLKEQLPKgnwkrksdgesgnmkkkvklsresqpleenqrqtrskrkatgdtleaspkiipk 320
Cdd:pfam00443  99 ----------------LDGLHEDLNG------------------------------------------------------ 108
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   321 cvsenesakpsqkkskvkinwlKPATKQPSIlskfcslgkittnqrskgqpkvnegdleedlekdgrdntvngsgpaspg 400
Cdd:pfam00443 109 ----------------------NHSTENESL------------------------------------------------- 117
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   401 ssvtpvdsseaksinkgaeqigfelVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpkt 480
Cdd:pfam00443 118 -------------------------ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFL--- 169
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   481 emktlrwaisQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDcyGGGLSKINTPLLTPL 560
Cdd:pfam00443 170 ----------QFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRF-----SYN--RSTWEKLNTEVEFPL 232
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|.
gi 62543525   561 KLSLEEWSTKPTND------SYGLFAVVMHSGiTISSGHYTASVKVTDLNS 605
Cdd:pfam00443 233 ELDLSRYLAEELKPktnnlqDYRLVAVVVHSG-SLSSGHYIAYIKAYENNR 282
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-253 1.25e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 66.20  E-value: 1.25e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPGFkagvkhlfniisrkKEALKDDSiqkdkGSCKEDPLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNYN-----PARRGANQSSDNLTNALRDLFDTMDKKQE 61
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEEIKNLTEFSSKVEE 235
Cdd:cd02657  62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELET 128
                       170
                ....*....|....*...
gi 62543525 236 KsLQKEETGGISSTETDS 253
Cdd:cd02657 129 K-MKCTESPDEEEVSTES 145
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
482-599 6.60e-08

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 56.42  E-value: 6.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  482 MKTLRWAISQFASVERIVGEDKYFCENcHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLK 561
Cdd:COG5077  337 MKNLQESFRRYIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRF-----EYDFERDMMVKINDRYEFPLE 410
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 62543525  562 LSLEEWSTKPTNDS------YGLFAVVMHSGiTISSGHYTASVK 599
Cdd:COG5077  411 IDLLPFLDRDADKSensdavYVLYGVLVHSG-DLHEGHYYALLK 453
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-101 8.97e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 42.10  E-value: 8.97e-04
                        10        20
                ....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:COG5533   1 GLPNLGNTCFMNSVLQILAL 20
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
81-112 1.70e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 41.10  E-value: 1.70e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 62543525    81 VGLNNLGNTCYLNSILQVLYFCPGF-KAGVKHL 112
Cdd:pfam13423   1 SGLETHIPNSYTNSLLQLLRFIPPLrNLALSHL 33
 
Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 3.02e-111

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 341.87  E-value: 3.02e-111
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671 121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671 201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                       170
                ....*....|....*.
gi 62543525 584 HSGITISSGHYTASVK 599
Cdd:cd02671 280 HSGATISSGHYTAYVR 295
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
407-604 2.99e-32

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 126.06  E-value: 2.99e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 407 DSSEAKSINKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVqedelskveesseisPEPKTEMKTLR 486
Cdd:cd02257  38 EELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL---------------PVKGLPQVSLE 102
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 487 WAISQFASVERIVGEDKYFCEnCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGlSKINTPLLTPLKLSLEE 566
Cdd:cd02257 103 DCLEKFFKEEILEGDNCYKCE-KKKKQEATKRLKIKKLPPVLIIHLKRF-----SFNEDGTK-EKLNTKVSFPLELDLSP 175
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 62543525 567 WSTKPTNDS--------YGLFAVVMHSGITISSGHYTASVKVTDLN 604
Cdd:cd02257 176 YLSEGEKDSdsdngsykYELVAVVVHSGTSADSGHYVAYVKDPSDG 221
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
81-605 1.31e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 116.77  E-value: 1.31e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525    81 VGLNNLGNTCYLNSILQVLYFCPGFKagvkhlfNIISRKKEALKDDSIQKDkgsckedplasYELICSLQSLIISveqlq 160
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFR-------DYLLRISPLSEDSRYNKD-----------INLLCALRDLFKA----- 57
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   161 asfLLNPEKYTdelATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCIlgniqetcqllkkeeiknltefsskveekslqk 240
Cdd:pfam00443  58 ---LQKNSKSS---SVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFL--------------------------------- 98
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   241 eetggisstetdstrnLDDLKEQLPKgnwkrksdgesgnmkkkvklsresqpleenqrqtrskrkatgdtleaspkiipk 320
Cdd:pfam00443  99 ----------------LDGLHEDLNG------------------------------------------------------ 108
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   321 cvsenesakpsqkkskvkinwlKPATKQPSIlskfcslgkittnqrskgqpkvnegdleedlekdgrdntvngsgpaspg 400
Cdd:pfam00443 109 ----------------------NHSTENESL------------------------------------------------- 117
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   401 ssvtpvdsseaksinkgaeqigfelVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpkt 480
Cdd:pfam00443 118 -------------------------ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFL--- 169
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   481 emktlrwaisQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDcyGGGLSKINTPLLTPL 560
Cdd:pfam00443 170 ----------QFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRF-----SYN--RSTWEKLNTEVEFPL 232
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|.
gi 62543525   561 KLSLEEWSTKPTND------SYGLFAVVMHSGiTISSGHYTASVKVTDLNS 605
Cdd:pfam00443 233 ELDLSRYLAEELKPktnnlqDYRLVAVVVHSG-SLSSGHYIAYIKAYENNR 282
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
426-603 4.62e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 109.32  E-value: 4.62e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 426 VEKLFQGQLVLRTRCLECESLTERREDFQDISVpvqedelsKVEESSEISpepktemKTLRwaisQFASVERIVGEDKYF 505
Cdd:cd02663 109 VHEIFQGILTNETRCLTCETVSSRDETFLDLSI--------DVEQNTSIT-------SCLR----QFSATETLCGRNKFY 169
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 506 CENCHHYTEAERSLLFDKMPEVITIHLKCFAASGlEFDCYggglSKINTPLLTPLKLSLEEWSTKPTNDS--YGLFAVVM 583
Cdd:cd02663 170 CDECCSLQEAEKRMKIKKLPKILALHLKRFKYDE-QLNRY----IKLFYRVVFPLELRLFNTTDDAENPDrlYELVAVVV 244
                       170       180
                ....*....|....*....|
gi 62543525 584 HSGITISSGHYTASVKVTDL 603
Cdd:cd02663 245 HIGGGPNHGHYVSIVKSHGG 264
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-599 2.76e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 103.89  E-value: 2.76e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVpvqedELSKVEesseispepktemkTLRWAISQFASVERIVGEDKY 504
Cdd:cd02661 123 LVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSL-----DIKGAD--------------SLEDALEQFTKPEQLDGENKY 183
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 505 FCENCHHYTEAERSLLFDKMPEVITIHLKCFAasglefdcyGGGLSKINTPLLTPLKLSLEEWSTKPTNDS--YGLFAVV 582
Cdd:cd02661 184 KCERCKKKVKASKQLTIHRAPNVLTIHLKRFS---------NFRGGKINKQISFPETLDLSPYMSQPNDGPlkYKLYAVL 254
                       170
                ....*....|....*..
gi 62543525 583 MHSGITISSGHYTASVK 599
Cdd:cd02661 255 VHSGFSPHSGHYYCYVK 271
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-600 1.26e-22

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 97.36  E-value: 1.26e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPvqedelskVEESSEISPEPktemkTLRWAISQFASVERIVGEDKY 504
Cdd:cd02674  39 IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLP--------IPSGSGDAPKV-----TLEDCLRLFTKEETLDGDNAW 105
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 505 FCENCHHYTEAERSLLFDKMPEVITIHLKcfaasglEFDCYGGGLSKINTPLLTPLK-LSLEEW---STKPTNDSYGLFA 580
Cdd:cd02674 106 KCPKCKKKRKATKKLTISRLPKVLIIHLK-------RFSFSRGSTRKLTTPVTFPLNdLDLTPYvdtRSFTGPFKYDLYA 178
                       170       180
                ....*....|....*....|
gi 62543525 581 VVMHSGiTISSGHYTASVKV 600
Cdd:cd02674 179 VVNHYG-SLNGGHYTAYCKN 197
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-600 9.40e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 95.92  E-value: 9.40e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPvqedelskveesseiSPEPKTEMKTLRWAISQFASVERIVGEDKY 504
Cdd:cd02667  68 FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLP---------------RSDEIKSECSIESCLKQFTEVEILEGNNKF 132
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 505 FCENChhyTEAERSLLFDKMPEVITIHLKCFAASGLefdcygGGLSKIN-----------TPLLTPLKLSLEEwstkPTN 573
Cdd:cd02667 133 ACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRS------ANLRKVSrhvsfpeildlAPFCDPKCNSSED----KSS 199
                       170       180
                ....*....|....*....|....*..
gi 62543525 574 DSYGLFAVVMHSGiTISSGHYTASVKV 600
Cdd:cd02667 200 VLYRLYGVVEHSG-TMRSGHYVAYVKV 225
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
406-604 2.38e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 96.17  E-value: 2.38e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 406 VDSSEAKSinKGAEQIGfeLVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVqedelskveesseispepkTEMKTL 485
Cdd:cd02659  97 FDKLEEKL--KGTGQEG--LIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV-------------------KGKKNL 153
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 486 RWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLKLSLE 565
Cdd:cd02659 154 EESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRF-----EFDFETMMRIKINDRFEFPLELDME 228
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 62543525 566 ----------EWSTKPTNDS---YGLFAVVMHSGiTISSGHYTASVKVTDLN 604
Cdd:cd02659 229 pytekglakkEGDSEKKDSEsyiYELHGVLVHSG-DAHGGHYYSYIKDRDDG 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
412-599 5.90e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 94.79  E-value: 5.90e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 412 KSINKGAEQIgfelVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEdelskveesseispepkteMKTLRWAISQ 491
Cdd:cd02668 108 KSKNPDLKNI----VQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKG-------------------HKTLEECIDE 164
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 492 FASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAasgleFDCYGGGLSKINTPLLTPLKLSLEEWS--T 569
Cdd:cd02668 165 FLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFV-----FDRKTGAKKKLNASISFPEILDMGEYLaeS 239
                       170       180       190
                ....*....|....*....|....*....|
gi 62543525 570 KPTNDSYGLFAVVMHSGITISSGHYTASVK 599
Cdd:cd02668 240 DEGSYVYELSGVLIHQGVSAYSGHYIAHIK 269
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
426-602 5.89e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 91.67  E-value: 5.89e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 426 VEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEdelsKVEESSEISPEPKTEMKTLRWAISQFASVERiVGEDKYF 505
Cdd:cd02660 123 IHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPN----KSTPSWALGESGVSGTPTLSDCLDRFTRPEK-LGDFAYK 197
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 506 CENCHHYTEAERSLLFDKMPEVITIHLKCFAASGlefdcyGGGLSKINTPLLTPLKLSLEEWSTKPTNDS---------- 575
Cdd:cd02660 198 CSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSL------NKTSRKIDTYVQFPLELNMTPYTSSSIGDTqdsnsldpdy 271
                       170       180
                ....*....|....*....|....*...
gi 62543525 576 -YGLFAVVMHSGiTISSGHYTASVKVTD 602
Cdd:cd02660 272 tYDLFAVVVHKG-TLDTGHYTAYCRQGD 298
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-594 1.48e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 72.52  E-value: 1.48e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 425 LVEKLFQGQLVLRTRCLEC--ESLTERREDFQDISVPVQEDelskveesseispepktemktlrwAISQFASVERIVGED 502
Cdd:cd02664  98 LIEKMFGGKLSTTIRCLNCnsTSARTERFRDLDLSFPSVQD------------------------LLNYFLSPEKLTGDN 153
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 503 KYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLKLSL-------------EEWST 569
Cdd:cd02664 154 QYYCEKCASLQDAEKEMKVTGAPEYLILTLLRF-----SYDQKTHVREKIMDNVSINEVLSLpvrveskssesplEKKEE 228
                       170       180       190
                ....*....|....*....|....*....|...
gi 62543525 570 KPTNDS--------YGLFAVVMHSGITISSGHY 594
Cdd:cd02664 229 ESGDDGelvtrqvhYRLYAVVVHSGYSSESGHY 261
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-253 1.25e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 66.20  E-value: 1.25e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPGFkagvkhlfniisrkKEALKDDSiqkdkGSCKEDPLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNYN-----PARRGANQSSDNLTNALRDLFDTMDKKQE 61
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEEIKNLTEFSSKVEE 235
Cdd:cd02657  62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELET 128
                       170
                ....*....|....*...
gi 62543525 236 KsLQKEETGGISSTETDS 253
Cdd:cd02657 129 K-MKCTESPDEEEVSTES 145
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
437-599 3.24e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 61.96  E-value: 3.24e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 437 RTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpkTEMKTlrwAISQFASVERIvgedKYFCENCHHYTEAE 516
Cdd:cd02658 137 RLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEP--VPLED---CLKAYFAPETI----EDFCSTCKEKTTAT 207
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 517 RSLLFDKMPEVITIHLKCFAASglefdcYGGGLSKINTPLLTPLKLsleewstkpTNDSYGLFAVVMHSGITISSGHYTA 596
Cdd:cd02658 208 KTTGFKTFPDYLVINMKRFQLL------ENWVPKKLDVPIDVPEEL---------GPGKYELIAFISHKGTSVHSGHYVA 272

                ...
gi 62543525 597 SVK 599
Cdd:cd02658 273 HIK 275
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
482-599 6.60e-08

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 56.42  E-value: 6.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  482 MKTLRWAISQFASVERIVGEDKYFCENcHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLK 561
Cdd:COG5077  337 MKNLQESFRRYIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRF-----EYDFERDMMVKINDRYEFPLE 410
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 62543525  562 LSLEEWSTKPTNDS------YGLFAVVMHSGiTISSGHYTASVK 599
Cdd:COG5077  411 IDLLPFLDRDADKSensdavYVLYGVLVHSG-DLHEGHYYALLK 453
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-307 3.82e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 52.71  E-value: 3.82e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPGFKAGVKHLFNIISrkkealkddsiqkdkgSCKEDPlaSYELICSLQSLIisveqlqA 161
Cdd:cd02658   1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP----------------SDVVDP--ANDLNCQLIKLA-------D 55
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 162 SFLLNPEKYTDELATQ---------PRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCqllKKEEIKNLTE-FSS 231
Cdd:cd02658  56 GLLSGRYSKPASLKSEndpyqvgikPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRES---FKNLGLNPNDlFKF 132
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 232 KVEEKsLQKEETGGISSTETDStrnlDDLKEQLPKGNWKRKSDGE----SGNMKKKVKLSRESQPLEENQRQTRSKRKAT 307
Cdd:cd02658 133 MIEDR-LECLSCKKVKYTSELS----EILSLPVPKDEATEKEEGElvyePVPLEDCLKAYFAPETIEDFCSTCKEKTTAT 207
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-156 1.56e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 50.46  E-value: 1.56e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPG----FKAGVKHLFNIISRKKEALKDDSIQKdkgsckedplaSYELICSLQSLIISV 156
Cdd:cd02667   1 GLSNLGNTCFFNAVMQNLSQTPAlrelLSETPKELFSQVCRKAPQFKGYQQQD-----------SHELLRYLLDGLRTF 68
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
82-101 2.19e-06

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 49.79  E-value: 2.19e-06
                        10        20
                ....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:cd02257   1 GLNNLGNTCYLNSVLQALFS 20
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
81-285 2.24e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 50.57  E-value: 2.24e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  81 VGLNNLGNTCYLNSILQvLYFCpgfkagVKHLFNIISrkkealkddSIQKDKGSCKEDPLASYEL---ICSLQSLIISVE 157
Cdd:cd02666   2 AGLDNIGNTCYLNSLLQ-YFFT------IKPLRDLVL---------NFDESKAELASDYPTERRIggrEVSRSELQRSNQ 65
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 158 QL-QASFLLNPEKYTDELATQPRRLLntlrelnpmyeGYLQHDAQEVLQCIlGNIQetCQLlkkeeiknltefsskveEK 236
Cdd:cd02666  66 FVyELRSLFNDLIHSNTRSVTPSKEL-----------AYLALRQQDVTECI-DNVL--FQL-----------------EV 114
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 62543525 237 SLQKEETGGISStETDSTRNLDDLKEQLPKGNWKRKSDGESGNMKKKVK 285
Cdd:cd02666 115 ALEPISNAFAGP-DTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVR 162
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-599 5.59e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 49.88  E-value: 5.59e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPGfkagVKHLFniISRKKEalkdDSIQKdkgsckEDPLASY-ELICSLQSLIISVeqlq 160
Cdd:COG5560 267 GLRNLGNTCYMNSALQCLMHTWE----LRDYF--LSDEYE----ESINE------ENPLGMHgSVASAYADLIKQL---- 326
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 161 asfllnpekYTDEL-ATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEIKNLTEFSSKVEEKSLQ 239
Cdd:COG5560 327 ---------YDGNLhAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKK 397
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 240 KEET------------------GGISSTETDSTRN--------LDDLKEQLP-KGNWKRKSD--GESGNMKK-KVKLSRE 289
Cdd:COG5560 398 KAKEcwwehlkrndsiitdlfqGMYKSTLTCPGCGsvsitfdpFMDLTLPLPvSMVWKHTIVvfPESGRRQPlKIELDAS 477
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 290 S-------QPLEENQRQTRSKRKATG-------DTLEASPKIIPKCVSE-NESAKPSQKKSKVKINWLKPATKQPSILSK 354
Cdd:COG5560 478 StirglkkLVDAEYGKLGCFEIKVMCiyyggnyNMLEPADKVLLQDIPQtDFVYLYETNDNGIEVPVVHLRIEKGYKSKR 557
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 355 FCSLGKITTNQRSKGQpkVNEGDLEEDLEKDGRdntvngsgpaspgSSVTPVDsseaksINKGAEQIGFELVEKLFQGQL 434
Cdd:COG5560 558 LFGDPFLQLNVLIKAS--IYDKLVKEFEELLVL-------------VEMKKTD------VDLVSEQVRLLREESSPSSWL 616
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 435 VLRTrclecESLTERREDFQDISVPVQEDELSKVEESSEIS-----------PEPKTEMK----TLRWAISQFASVERIV 499
Cdd:COG5560 617 KLET-----EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRylslfsydplwTIREIGAAertiTLQDCLNEFSKPEQLG 691
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 500 GEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaASGLEFDcyggglSKINTPLLTP---LKLSLEEWSTKPTNDSY 576
Cdd:COG5560 692 LSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRF-SSVRSFR------DKIDDLVEYPiddLDLSGVEYMVDDPRLIY 764
                       570       580
                ....*....|....*....|...
gi 62543525 577 GLFAVVMHSGITiSSGHYTASVK 599
Cdd:COG5560 765 DLYAVDNHYGGL-SGGHYTAYAR 786
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-117 4.01e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 45.82  E-value: 4.01e-05
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPGFkagVKHLFNIIS 117
Cdd:cd02662   1 GLVNLGNTCFMNSVLQALASLPSL---IEYLEEFLE 33
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
429-596 1.04e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 44.66  E-value: 1.04e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 429 LFQGQLVLRTRCLECESLTERREDFQDI---SVPVQEDELSKVEESseispepktemktlrwAISQFASVERIvgeDKYF 505
Cdd:cd02662  55 PFDGLLASRIVCLQCGESSKVRYESFTMlslPVPNQSSGSGTTLEH----------------CLDDFLSTEII---DDYK 115
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525 506 CENChhyteaerSLLFDKMPEVITIHLkcfaaSGLEFDCYGGGL---SKINTPLLTPLKLsleewstkptndsYGLFAVV 582
Cdd:cd02662 116 CDRC--------QTVIVRLPQILCIHL-----SRSVFDGRGTSTknsCKVSFPERLPKVL-------------YRLRAVV 169
                       170
                ....*....|....
gi 62543525 583 MHSGiTISSGHYTA 596
Cdd:cd02662 170 VHYG-SHSSGHYVC 182
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-99 1.53e-04

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 43.82  E-value: 1.53e-04
                        10
                ....*....|....*...
gi 62543525  82 GLNNLGNTCYLNSILQVL 99
Cdd:cd02674   1 GLRNLGNTCYMNSILQCL 18
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
408-602 3.35e-04

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 43.41  E-value: 3.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   408 SSEAKSINKGAEQiGFELVEKLFQGQLVLRTRCLECESLTERREdfqdiSVPVQEDELSKVEESSEISPEPKTemktlrw 487
Cdd:pfam13423 111 SSEENSTPPNPSP-AESPLEQLFGIDAETTIRCSNCGHESVRES-----STHVLDLIYPRKPSSNNKKPPNQT------- 177
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525   488 aISQF--ASVERIVGEdKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLskintplltPLKLSLE 565
Cdd:pfam13423 178 -FSSIlkSSLERETTT-KAWCEKCKRYQPLESRRTVRNLPPVLSLNAALTNEEWRQLWKTPGWL---------PPEIGLT 246
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 62543525   566 EWSTKPTNDS---YGLFAVVMHSGITISSGHYTASVKVTD 602
Cdd:pfam13423 247 LSDDLQGDNEivkYELRGVVVHIGDSGTSGHLVSFVKVAD 286
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-101 8.97e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 42.10  E-value: 8.97e-04
                        10        20
                ....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:COG5533   1 GLPNLGNTCFMNSVLQILAL 20
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-226 1.02e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 42.02  E-value: 1.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62543525  82 GLNNLGNTCYLNSILQVLYFCPGFkagvkhlfniisrkKEALKDDSIQKDKGSCKEDPLASYElicslQSLIIsvEQLQA 161
Cdd:cd02668   1 GLKNLGATCYVNSFLQLWFMNLEF--------------RKAVYECNSTEDAELKNMPPDKPHE-----PQTII--DQLQL 59
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62543525 162 SFLL---NPEKYTDelatqPRRLLNTLRELNPmyegyLQHDAQEVLQCILGNIQETCQLLKKEEIKNL 226
Cdd:cd02668  60 IFAQlqfGNRSVVD-----PSGFVKALGLDTG-----QQQDAQEFSKLFLSLLEAKLSKSKNPDLKNI 117
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
80-109 1.41e-03

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 42.16  E-value: 1.41e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 62543525   80 FVGLNNLGNTCYLNSILQVLYFCPGFKAGV 109
Cdd:COG5077  193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDV 222
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
81-112 1.70e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 41.10  E-value: 1.70e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 62543525    81 VGLNNLGNTCYLNSILQVLYFCPGF-KAGVKHL 112
Cdd:pfam13423   1 SGLETHIPNSYTNSLLQLLRFIPPLrNLALSHL 33
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-100 2.06e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 40.94  E-value: 2.06e-03
                        10
                ....*....|....*....
gi 62543525  82 GLNNLGNTCYLNSILQVLY 100
Cdd:cd02664   1 GLINLGNTCYMNSVLQALF 19
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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