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Conserved domains on  [gi|189491614|ref|NP_001093985|]
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mitochondrial outer membrane protein SLC25A46 [Rattus norvegicus]

Protein Classification

solute carrier family 25 protein( domain architecture ID 1000144)

solute carrier family 25 (SLC25) protein which transfers molecules across the membranes of organelles, usually mitochondria

Gene Ontology:  GO:0006839
PubMed:  23266187

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mito_carr super family cl37969
Mitochondrial carrier protein;
317-402 6.87e-09

Mitochondrial carrier protein;


The actual alignment was detected with superfamily member pfam00153:

Pssm-ID: 395101 [Multi-domain]  Cd Length: 96  Bit Score: 53.04  E-value: 6.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189491614  317 LIANFAASLCSDVILYPLETVLHRLHIQGTRTiidntdlgyevlpiNTQYEGMRDCVNTIKQEEGVFGFYKGFGAVIIQY 396
Cdd:pfam00153   9 LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSG--------------KSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRV 74


                  ....*.
gi 189491614  397 TLHATI 402
Cdd:pfam00153  75 APAAAI 80
 
Name Accession Description Interval E-value
Mito_carr pfam00153
Mitochondrial carrier protein;
317-402 6.87e-09

Mitochondrial carrier protein;


Pssm-ID: 395101 [Multi-domain]  Cd Length: 96  Bit Score: 53.04  E-value: 6.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189491614  317 LIANFAASLCSDVILYPLETVLHRLHIQGTRTiidntdlgyevlpiNTQYEGMRDCVNTIKQEEGVFGFYKGFGAVIIQY 396
Cdd:pfam00153   9 LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSG--------------KSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRV 74


                  ....*.
gi 189491614  397 TLHATI 402
Cdd:pfam00153  75 APAAAI 80
 
Name Accession Description Interval E-value
Mito_carr pfam00153
Mitochondrial carrier protein;
317-402 6.87e-09

Mitochondrial carrier protein;


Pssm-ID: 395101 [Multi-domain]  Cd Length: 96  Bit Score: 53.04  E-value: 6.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189491614  317 LIANFAASLCSDVILYPLETVLHRLHIQGTRTiidntdlgyevlpiNTQYEGMRDCVNTIKQEEGVFGFYKGFGAVIIQY 396
Cdd:pfam00153   9 LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSG--------------KSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRV 74


                  ....*.
gi 189491614  397 TLHATI 402
Cdd:pfam00153  75 APAAAI 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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