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Conserved domains on  [gi|157820957|ref|NP_001099771|]
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non-structural maintenance of chromosomes element 4 homolog A [Rattus norvegicus]

Protein Classification

Nse4-Nse3_bdg domain-containing protein( domain architecture ID 10634153)

Nse4-Nse3_bdg domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nse4-Nse3_bdg pfam15412
Binding domain of Nse4/EID3 to Nse3-MAGE; This family includes Nse4 and EID3 members, that ...
 130-183 5.43e-11

Binding domain of Nse4/EID3 to Nse3-MAGE; This family includes Nse4 and EID3 members, that bind over this region to the Nse3 pocket, in MAGE family pfam01454.


:

Pssm-ID: 464708  Cd Length: 56  Bit Score: 56.07  E-value: 5.43e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 157820957  130 DAQFLVLASDLGKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEEFIRDED 183
Cdd:pfam15412   1 DSRLLVLASDLGAEKARNLKSGGGGFDVDEFVSKLKTFMGGNRLEGAGEEDDDD 54
 
Name Accession Description Interval E-value
Nse4-Nse3_bdg pfam15412
Binding domain of Nse4/EID3 to Nse3-MAGE; This family includes Nse4 and EID3 members, that ...
 130-183 5.43e-11

Binding domain of Nse4/EID3 to Nse3-MAGE; This family includes Nse4 and EID3 members, that bind over this region to the Nse3 pocket, in MAGE family pfam01454.


Pssm-ID: 464708  Cd Length: 56  Bit Score: 56.07  E-value: 5.43e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 157820957  130 DAQFLVLASDLGKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEEFIRDED 183
Cdd:pfam15412   1 DSRLLVLASDLGAEKARNLKSGGGGFDVDEFVSKLKTFMGGNRLEGAGEEDDDD 54
 
Name Accession Description Interval E-value
Nse4-Nse3_bdg pfam15412
Binding domain of Nse4/EID3 to Nse3-MAGE; This family includes Nse4 and EID3 members, that ...
 130-183 5.43e-11

Binding domain of Nse4/EID3 to Nse3-MAGE; This family includes Nse4 and EID3 members, that bind over this region to the Nse3 pocket, in MAGE family pfam01454.


Pssm-ID: 464708  Cd Length: 56  Bit Score: 56.07  E-value: 5.43e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 157820957  130 DAQFLVLASDLGKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEEFIRDED 183
Cdd:pfam15412   1 DSRLLVLASDLGAEKARNLKSGGGGFDVDEFVSKLKTFMGGNRLEGAGEEDDDD 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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