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Conserved domains on  [gi|157824142|ref|NP_001099901|]
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stomatin-like protein 3 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SPFH_like super family cl19107
core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model ...
44-73 6.81e-10

core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model summarizes proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons, and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.


The actual alignment was detected with superfamily member cd08827:

Pssm-ID: 473137 [Multi-domain]  Cd Length: 223  Bit Score: 53.74  E-value: 6.81e-10
                         10        20        30
                 ....*....|....*....|....*....|
gi 157824142  44 WMCLKIIKEYERAVVFRLGRIQADKAKGPG 73
Cdd:cd08827    1 WFCVKVVREYERAVIFRLGHLLQGRARGPG 30
 
Name Accession Description Interval E-value
SPFH_podocin cd08827
Podocin, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH ...
44-73 6.81e-10

Podocin, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in vertebrates. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Podocin is expressed in the kidney and mutations in the gene have been linked to familial idiopathic nephrotic syndrome. Podocin interacts with the TRP ion channel TRPV-6 and may function as a scaffolding protein in the organization of lipid-protein domains.


Pssm-ID: 259809 [Multi-domain]  Cd Length: 223  Bit Score: 53.74  E-value: 6.81e-10
                         10        20        30
                 ....*....|....*....|....*....|
gi 157824142  44 WMCLKIIKEYERAVVFRLGRIQADKAKGPG 73
Cdd:cd08827    1 WFCVKVVREYERAVIFRLGHLLQGRARGPG 30
PHB smart00244
prohibitin homologues; prohibitin homologues
45-74 5.16e-05

prohibitin homologues; prohibitin homologues


Pssm-ID: 214581 [Multi-domain]  Cd Length: 160  Bit Score: 39.95  E-value: 5.16e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 157824142    45 MCLKIIKEYERAVVFRLGRIQadKAKGPGT 74
Cdd:smart00244   1 AAIKVVGEGERGVVERLGRVL--RVLGPGL 28
HflC COG0330
Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational ...
41-73 1.02e-03

Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440099 [Multi-domain]  Cd Length: 279  Bit Score: 36.74  E-value: 1.02e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 157824142  41 VSIWMCLKIIKEYERAVVFRLGRIQadKAKGPG 73
Cdd:COG0330   15 VLLFSSVYIVPQGERGVVLRFGKYV--RTLEPG 45
 
Name Accession Description Interval E-value
SPFH_podocin cd08827
Podocin, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH ...
44-73 6.81e-10

Podocin, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in vertebrates. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Podocin is expressed in the kidney and mutations in the gene have been linked to familial idiopathic nephrotic syndrome. Podocin interacts with the TRP ion channel TRPV-6 and may function as a scaffolding protein in the organization of lipid-protein domains.


Pssm-ID: 259809 [Multi-domain]  Cd Length: 223  Bit Score: 53.74  E-value: 6.81e-10
                         10        20        30
                 ....*....|....*....|....*....|
gi 157824142  44 WMCLKIIKEYERAVVFRLGRIQADKAKGPG 73
Cdd:cd08827    1 WFCVKVVREYERAVIFRLGHLLQGRARGPG 30
PHB smart00244
prohibitin homologues; prohibitin homologues
45-74 5.16e-05

prohibitin homologues; prohibitin homologues


Pssm-ID: 214581 [Multi-domain]  Cd Length: 160  Bit Score: 39.95  E-value: 5.16e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 157824142    45 MCLKIIKEYERAVVFRLGRIQadKAKGPGT 74
Cdd:smart00244   1 AAIKVVGEGERGVVERLGRVL--RVLGPGL 28
HflC COG0330
Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational ...
41-73 1.02e-03

Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440099 [Multi-domain]  Cd Length: 279  Bit Score: 36.74  E-value: 1.02e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 157824142  41 VSIWMCLKIIKEYERAVVFRLGRIQadKAKGPG 73
Cdd:COG0330   15 VLLFSSVYIVPQGERGVVLRFGKYV--RTLEPG 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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