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Conserved domains on  [gi|157824097|ref|NP_001099928|]
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pre-mRNA-splicing factor SPF27 [Rattus norvegicus]

Protein Classification

pre-mRNA-splicing factor SPF27 family protein( domain architecture ID 10529685)

pre-mRNA-splicing factor SPF27 family protein similar to human SPF27, also called breast carcinoma-amplified sequence 2 or BCAS2, that is required for pre-mRNA splicing as a component of the activated spliceosome

Gene Ontology:  GO:0006397

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BCAS2 pfam05700
Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic ...
 11-213 1.20e-99

Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.


:

Pssm-ID: 428593 [Multi-domain]  Cd Length: 204  Bit Score: 287.94  E-value: 1.20e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157824097   11 VVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELP 90
Cdd:pfam05700   1 EVHDSLPYIDDEYEDPGLREAADALIEEELRRSRPTPNYLPDLPPPPEPAFFSPLLAAELERVEAGQPLTALDLSRYELP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157824097   91 APSSGQKNDITAWQDCVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNM 170
Cdd:pfam05700  81 APPSGKRNDLEAWKEALDNAYAQLEHQRIRIENLELLQKYGANAWRLHNYQLEAILRRLEKELAETKEAIEEVNRQRKNA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 157824097  171 QLTAGAKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQH 213
Cdd:pfam05700 161 QTAAGGELRSLEEKWKELVSKNLEIEAACEALEAEILELKRQA 203
 
Name Accession Description Interval E-value
BCAS2 pfam05700
Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic ...
 11-213 1.20e-99

Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.


Pssm-ID: 428593 [Multi-domain]  Cd Length: 204  Bit Score: 287.94  E-value: 1.20e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157824097   11 VVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELP 90
Cdd:pfam05700   1 EVHDSLPYIDDEYEDPGLREAADALIEEELRRSRPTPNYLPDLPPPPEPAFFSPLLAAELERVEAGQPLTALDLSRYELP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157824097   91 APSSGQKNDITAWQDCVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNM 170
Cdd:pfam05700  81 APPSGKRNDLEAWKEALDNAYAQLEHQRIRIENLELLQKYGANAWRLHNYQLEAILRRLEKELAETKEAIEEVNRQRKNA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 157824097  171 QLTAGAKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQH 213
Cdd:pfam05700 161 QTAAGGELRSLEEKWKELVSKNLEIEAACEALEAEILELKRQA 203
 
Name Accession Description Interval E-value
BCAS2 pfam05700
Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic ...
 11-213 1.20e-99

Breast carcinoma amplified sequence 2 (BCAS2); This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.


Pssm-ID: 428593 [Multi-domain]  Cd Length: 204  Bit Score: 287.94  E-value: 1.20e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157824097   11 VVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELP 90
Cdd:pfam05700   1 EVHDSLPYIDDEYEDPGLREAADALIEEELRRSRPTPNYLPDLPPPPEPAFFSPLLAAELERVEAGQPLTALDLSRYELP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157824097   91 APSSGQKNDITAWQDCVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNM 170
Cdd:pfam05700  81 APPSGKRNDLEAWKEALDNAYAQLEHQRIRIENLELLQKYGANAWRLHNYQLEAILRRLEKELAETKEAIEEVNRQRKNA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 157824097  171 QLTAGAKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQH 213
Cdd:pfam05700 161 QTAAGGELRSLEEKWKELVSKNLEIEAACEALEAEILELKRQA 203
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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