NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|157820639|ref|NP_001100123|]
View 

testis-expressed protein 10 [Rattus norvegicus]

Protein Classification

IPI1/TEX10 family protein( domain architecture ID 10574536)

IPI1/TEX10 family protein similar to human testis-expressed protein 10 (TEX10) that functions as a component of the Five Friends of Methylated CHTOP (5FMC) complex, and Saccharomyces cerevisiae pre-rRNA-processing protein IPI1 that is a component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA

Gene Ontology:  GO:0032991

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ipi1_N pfam12333
Rix1 complex component involved in 60S ribosome maturation; This domain family is found in ...
 132-235 2.84e-25

Rix1 complex component involved in 60S ribosome maturation; This domain family is found in eukaryotes, and is typically between 91 and 105 amino acids in length. This family is the N terminal of Ipi1, a component of the Rix1 complex which works in conjunction with Rea1 to mature the 60S ribosome.


:

Pssm-ID: 463535  Cd Length: 101  Bit Score: 100.76  E-value: 2.84e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820639  132 EQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDVLLEHYPALITG--RSSILLKNFVELISHqQLSKGLVNRDrpqSWI 209
Cdd:pfam12333   1 EDLRPHFRLLLLYIRSAMTHISPDIRNDSLKFLDWLLEVAPDELVScaGWVKTLKNFLSLLGW-SRESSSKGST---SAS 76

                          90       100
                  ....*....|....*....|....*.
gi 157820639  210 LSVNPNRRVtSQQWRLKVLARLSKFL 235
Cdd:pfam12333  77 TSSSSNSKK-SKKWRLKVLQRLAKFL 101
 
Name Accession Description Interval E-value
Ipi1_N pfam12333
Rix1 complex component involved in 60S ribosome maturation; This domain family is found in ...
 132-235 2.84e-25

Rix1 complex component involved in 60S ribosome maturation; This domain family is found in eukaryotes, and is typically between 91 and 105 amino acids in length. This family is the N terminal of Ipi1, a component of the Rix1 complex which works in conjunction with Rea1 to mature the 60S ribosome.


Pssm-ID: 463535  Cd Length: 101  Bit Score: 100.76  E-value: 2.84e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820639  132 EQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDVLLEHYPALITG--RSSILLKNFVELISHqQLSKGLVNRDrpqSWI 209
Cdd:pfam12333   1 EDLRPHFRLLLLYIRSAMTHISPDIRNDSLKFLDWLLEVAPDELVScaGWVKTLKNFLSLLGW-SRESSSKGST---SAS 76

                          90       100
                  ....*....|....*....|....*.
gi 157820639  210 LSVNPNRRVtSQQWRLKVLARLSKFL 235
Cdd:pfam12333  77 TSSSSNSKK-SKKWRLKVLQRLAKFL 101
 
Name Accession Description Interval E-value
Ipi1_N pfam12333
Rix1 complex component involved in 60S ribosome maturation; This domain family is found in ...
 132-235 2.84e-25

Rix1 complex component involved in 60S ribosome maturation; This domain family is found in eukaryotes, and is typically between 91 and 105 amino acids in length. This family is the N terminal of Ipi1, a component of the Rix1 complex which works in conjunction with Rea1 to mature the 60S ribosome.


Pssm-ID: 463535  Cd Length: 101  Bit Score: 100.76  E-value: 2.84e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820639  132 EQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDVLLEHYPALITG--RSSILLKNFVELISHqQLSKGLVNRDrpqSWI 209
Cdd:pfam12333   1 EDLRPHFRLLLLYIRSAMTHISPDIRNDSLKFLDWLLEVAPDELVScaGWVKTLKNFLSLLGW-SRESSSKGST---SAS 76

                          90       100
                  ....*....|....*....|....*.
gi 157820639  210 LSVNPNRRVtSQQWRLKVLARLSKFL 235
Cdd:pfam12333  77 TSSSSNSKK-SKKWRLKVLQRLAKFL 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH