DNA-binding protein RFX5 [Rattus norvegicus]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
RFX5_DNA_bdg | pfam14621 | RFX5 DNA-binding domain; RFX5 and RFXAP reveals molecular details associated with MHCII gene ... |
466-679 | 1.79e-110 | ||||
RFX5 DNA-binding domain; RFX5 and RFXAP reveals molecular details associated with MHCII gene expression. : Pssm-ID: 464220 Cd Length: 219 Bit Score: 332.64 E-value: 1.79e-110
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RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
94-167 | 1.93e-32 | ||||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). : Pssm-ID: 460512 Cd Length: 79 Bit Score: 119.96 E-value: 1.93e-32
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RFX5_N | pfam18326 | RFX5 N-terminal domain; This is the N-terminal domain of regulatory factor X (RFX)-5 protein ... |
27-85 | 3.17e-30 | ||||
RFX5 N-terminal domain; This is the N-terminal domain of regulatory factor X (RFX)-5 protein of the RFX complex present in Homo sapiens. The RFX complex is made up of RFX5, RFXAP and RFXB. The complex is involved in the regulation of the expression of the major histocompatibility complex class II (MHCII) gene products. These gene products are essential for the initiation and regulation of the mammalian immune response. The N-terminal domain of RFX5 is responsible for homodimerization of RFX5 which promotes folding of the C-terminal domain of RFXAP. The folding of RFXAP results in the formation of a potential binding site for RFXB to bind to the MHCII promoter. : Pssm-ID: 375753 Cd Length: 59 Bit Score: 113.12 E-value: 3.17e-30
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Name | Accession | Description | Interval | E-value | ||||
RFX5_DNA_bdg | pfam14621 | RFX5 DNA-binding domain; RFX5 and RFXAP reveals molecular details associated with MHCII gene ... |
466-679 | 1.79e-110 | ||||
RFX5 DNA-binding domain; RFX5 and RFXAP reveals molecular details associated with MHCII gene expression. Pssm-ID: 464220 Cd Length: 219 Bit Score: 332.64 E-value: 1.79e-110
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RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
94-167 | 1.93e-32 | ||||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). Pssm-ID: 460512 Cd Length: 79 Bit Score: 119.96 E-value: 1.93e-32
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RFX5_N | pfam18326 | RFX5 N-terminal domain; This is the N-terminal domain of regulatory factor X (RFX)-5 protein ... |
27-85 | 3.17e-30 | ||||
RFX5 N-terminal domain; This is the N-terminal domain of regulatory factor X (RFX)-5 protein of the RFX complex present in Homo sapiens. The RFX complex is made up of RFX5, RFXAP and RFXB. The complex is involved in the regulation of the expression of the major histocompatibility complex class II (MHCII) gene products. These gene products are essential for the initiation and regulation of the mammalian immune response. The N-terminal domain of RFX5 is responsible for homodimerization of RFX5 which promotes folding of the C-terminal domain of RFXAP. The folding of RFXAP results in the formation of a potential binding site for RFXB to bind to the MHCII promoter. Pssm-ID: 375753 Cd Length: 59 Bit Score: 113.12 E-value: 3.17e-30
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COG3378 | COG3378 | DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; |
86-167 | 4.79e-07 | ||||
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; Pssm-ID: 442605 [Multi-domain] Cd Length: 403 Bit Score: 52.64 E-value: 4.79e-07
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Name | Accession | Description | Interval | E-value | ||||
RFX5_DNA_bdg | pfam14621 | RFX5 DNA-binding domain; RFX5 and RFXAP reveals molecular details associated with MHCII gene ... |
466-679 | 1.79e-110 | ||||
RFX5 DNA-binding domain; RFX5 and RFXAP reveals molecular details associated with MHCII gene expression. Pssm-ID: 464220 Cd Length: 219 Bit Score: 332.64 E-value: 1.79e-110
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RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
94-167 | 1.93e-32 | ||||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). Pssm-ID: 460512 Cd Length: 79 Bit Score: 119.96 E-value: 1.93e-32
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RFX5_N | pfam18326 | RFX5 N-terminal domain; This is the N-terminal domain of regulatory factor X (RFX)-5 protein ... |
27-85 | 3.17e-30 | ||||
RFX5 N-terminal domain; This is the N-terminal domain of regulatory factor X (RFX)-5 protein of the RFX complex present in Homo sapiens. The RFX complex is made up of RFX5, RFXAP and RFXB. The complex is involved in the regulation of the expression of the major histocompatibility complex class II (MHCII) gene products. These gene products are essential for the initiation and regulation of the mammalian immune response. The N-terminal domain of RFX5 is responsible for homodimerization of RFX5 which promotes folding of the C-terminal domain of RFXAP. The folding of RFXAP results in the formation of a potential binding site for RFXB to bind to the MHCII promoter. Pssm-ID: 375753 Cd Length: 59 Bit Score: 113.12 E-value: 3.17e-30
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COG3378 | COG3378 | DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; |
86-167 | 4.79e-07 | ||||
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; Pssm-ID: 442605 [Multi-domain] Cd Length: 403 Bit Score: 52.64 E-value: 4.79e-07
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Blast search parameters | ||||
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