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Conserved domains on  [gi|157819633|ref|NP_001101777|]
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CST complex subunit TEN1 [Rattus norvegicus]

Protein Classification

nuclear telomere cap complex subunit Ten1( domain architecture ID 10634595)

nuclear telomere cap complex subunit Ten1 is required for proper capping of the telomere

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ten1_2 pfam15490
Telomere-capping, CST complex subunit; Ten1_2 is a family of primarily plant and vertebrate ...
 2-118 4.93e-61

Telomere-capping, CST complex subunit; Ten1_2 is a family of primarily plant and vertebrate telomere-capping proteins that is evolutionarily related to the mostly fungal family of Ten1, pfam12658.


:

Pssm-ID: 464745  Cd Length: 117  Bit Score: 185.52  E-value: 4.93e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819633    2 LPKPGTYYFPWEISDGQVPEGSTLRTFGRLYLYDMAHSRVTLTAPQKPDQCQLLVCTKLVEPFKAHVNFLYMVLGELERI 81
Cdd:pfam15490   1 LPKAGVIVFLWELSSGSLPEGSSVRTFGRLQSYDVATSRATLTAQHESKQHQLRVDTDLVEPFEARVGSLYQVIGELEHQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 157819633   82 EGGALVLKARLLTCVEGMDLSLLEKAILEQRLHLQKR 118
Cdd:pfam15490  81 EGGGIVLRARVLRCVDGLDLPLYEQAIEERRKFLQER 117
 
Name Accession Description Interval E-value
Ten1_2 pfam15490
Telomere-capping, CST complex subunit; Ten1_2 is a family of primarily plant and vertebrate ...
 2-118 4.93e-61

Telomere-capping, CST complex subunit; Ten1_2 is a family of primarily plant and vertebrate telomere-capping proteins that is evolutionarily related to the mostly fungal family of Ten1, pfam12658.


Pssm-ID: 464745  Cd Length: 117  Bit Score: 185.52  E-value: 4.93e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819633    2 LPKPGTYYFPWEISDGQVPEGSTLRTFGRLYLYDMAHSRVTLTAPQKPDQCQLLVCTKLVEPFKAHVNFLYMVLGELERI 81
Cdd:pfam15490   1 LPKAGVIVFLWELSSGSLPEGSSVRTFGRLQSYDVATSRATLTAQHESKQHQLRVDTDLVEPFEARVGSLYQVIGELEHQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 157819633   82 EGGALVLKARLLTCVEGMDLSLLEKAILEQRLHLQKR 118
Cdd:pfam15490  81 EGGGIVLRARVLRCVDGLDLPLYEQAIEERRKFLQER 117
 
Name Accession Description Interval E-value
Ten1_2 pfam15490
Telomere-capping, CST complex subunit; Ten1_2 is a family of primarily plant and vertebrate ...
 2-118 4.93e-61

Telomere-capping, CST complex subunit; Ten1_2 is a family of primarily plant and vertebrate telomere-capping proteins that is evolutionarily related to the mostly fungal family of Ten1, pfam12658.


Pssm-ID: 464745  Cd Length: 117  Bit Score: 185.52  E-value: 4.93e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819633    2 LPKPGTYYFPWEISDGQVPEGSTLRTFGRLYLYDMAHSRVTLTAPQKPDQCQLLVCTKLVEPFKAHVNFLYMVLGELERI 81
Cdd:pfam15490   1 LPKAGVIVFLWELSSGSLPEGSSVRTFGRLQSYDVATSRATLTAQHESKQHQLRVDTDLVEPFEARVGSLYQVIGELEHQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 157819633   82 EGGALVLKARLLTCVEGMDLSLLEKAILEQRLHLQKR 118
Cdd:pfam15490  81 EGGGIVLRARVLRCVDGLDLPLYEQAIEERRKFLQER 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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