|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
561-1060 |
6.14e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.24 E-value: 6.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 561 RLKLELEEKKQAMVLLQRALAQQRdlATRRVKETEKELSRQ----LRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEA 636
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELE--AELAELEAELEELRLeleeLELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 637 VVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLR 716
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 717 GLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLytEVAEEKERLGQQ 796
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE--ALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 797 AARQRVELEELRQQLEE--SSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTREREL 874
Cdd:COG1196 472 AALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 875 KEEIRKGRDQEIE-LVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKER 953
Cdd:COG1196 552 VVEDDEVAAAAIEyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 954 LQSLLRQKEKELDDLRVVNTQMcsERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALARK 1033
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEG--EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500
....*....|....*....|....*..
gi 157819725 1034 EAAVNSLRKQHEAAEKRADHLEELLEQ 1060
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREE 736
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
562-1060 |
2.58e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.31 E-value: 2.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 562 LKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAEL 641
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 642 KQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREkwinEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEA 721
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEEL----EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 722 ELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQR 801
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER-LEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 802 VELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKG 881
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 882 RDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSEL-------EQSERKLQERCTELKGRLGEAEGEKERL 954
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiraRAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 955 QSLLRQKEKELDDLRVVNTQMC-----SERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTA 1029
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510
....*....|....*....|....*....|.
gi 157819725 1030 LARKEAAVNSLRKQHEAAEKRADHLEELLEQ 1060
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEE 723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
709-1061 |
9.21e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 9.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 709 KQEVRRLRglHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYtEVAE 788
Cdd:COG1196 219 KEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-ELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 789 EKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQerrhqmELKALKDQLEAERQAWVASCAKKEEAwLL 868
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE------ELEEELEEAEEELEEAEAELAEAEEA-LL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 869 TRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAE 948
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 949 GEKERLQSLLRQKEKELDDLRVVNTQmcseraslaqvVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKT 1028
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAAL-----------LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
330 340 350
....*....|....*....|....*....|...
gi 157819725 1029 ALARKEAAVNSLRKQHEAAEKRADHLEELLEQH 1061
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
550-1014 |
3.08e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 3.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 550 ELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEK--ELSRQLRQQKEQYEATIQRHLSFIDQLIEDK 627
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 628 KVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEiKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAK 707
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 708 HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQR----------ALEQ 777
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLaglrglagavAVLI 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 778 QRRRLYTEVAEEKE--RLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAW 855
Cdd:COG1196 531 GVEAAYEAALEAALaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 856 VASCAKK----------EEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSE 925
Cdd:COG1196 611 ADARYYVlgdtllgrtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 926 LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVK 1005
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER----EELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
....*....
gi 157819725 1006 AELAELRAR 1014
Cdd:COG1196 767 RELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1061 |
7.73e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 7.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 567 EEKKQAMVLLQRALAQQRDLATRRVKETEK--ELSRQLRQQKEQYEATIQRhlsfidqlIEDKKVLSEKCEAVVAELKQG 644
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKKADAAKKK--------AEEAKKAAEAAKAEAEAAADE 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 645 DQRCRERVAQVQEQHELEIKKLKELMSATEKIRR----EKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRlrglhE 720
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadeaKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK-----A 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 721 AELQQREEQAaqRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRrlyTEVAEEKERLGQQAARQ 800
Cdd:PTZ00121 1434 DEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK---AEEAKKKADEAKKAAEA 1508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 801 RVELEELRQQLEESSA-ALTRALRAEFERSREEQERRHQM-ELKALKDQLEAERQAWVASCAKKEEAWLLTRERelKEEI 878
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKAdELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEA 1586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 879 RKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVR-DKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSL 957
Cdd:PTZ00121 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 958 LRQKEKElddlrvvntQMCSERASLAQVVRQEFAEQLAASQEETQRV----KAELAELRARQQMELDEVHRRVKTALARK 1033
Cdd:PTZ00121 1667 AKKAEED---------KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
490 500
....*....|....*....|....*...
gi 157819725 1034 EAAvnslRKQHEAAEKRADHLEELLEQH 1061
Cdd:PTZ00121 1738 EAE----EDKKKAEEAKKDEEEKKKIAH 1761
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
756-1065 |
8.26e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 8.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 756 ERERAQQRLEQHLEQEQR--ALEQQRRRL--------YTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAE 825
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERykELKAELRELelallvlrLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 826 FERSREEQERRH-QMELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIEL--VIHRLEADMTLAKE 902
Cdd:TIGR02168 277 SELEEEIEELQKeLYALANEISRLEQQKQI-----LRERLANLERQLEELEAQLEELESKLDELaeELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 903 ESErAAENRVKRVRDKYEtelsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcSERASL 982
Cdd:TIGR02168 352 ELE-SLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE-------DRRERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 983 AQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTA---LARKEAAVNSLRKQHEAAEKRADHLEELLE 1059
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELreeLEEAEQALDAAERELAQLQARLDSLERLQE 499
|
....*.
gi 157819725 1060 QHKGPS 1065
Cdd:TIGR02168 500 NLEGFS 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
312-978 |
4.48e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 4.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 312 RQEEAARKKAREEKARQARQAAiqelQQKRAQKAREVEHRPPKERPETRALEQPRPTQEPPSMPSSVTHPKANNAGASLY 391
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE 1275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 392 PTGPADPCPPASEsfperqpslEDKPQDAHSQVEAREdlAALASTRSKTRARATLDDLLDTLKLLEEEPEPLLHPKAYRQ 471
Cdd:PTZ00121 1276 EARKADELKKAEE---------KKKADEAKKAEEKKK--ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 472 DRYAWMDEEEdtnplTADNLEKFGKLSAApgppdDGTLLSEAKLQSimtflDEMEKSGQE-RPAPWRESLVLEAGPRSLE 550
Cdd:PTZ00121 1345 AEAAKAEAEA-----AADEAEAAEEKAEA-----AEKKKEEAKKKA-----DAAKKKAEEkKKADEAKKKAEEDKKKADE 1409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 551 L--GSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATiqrhlsfidqliEDKK 628
Cdd:PTZ00121 1410 LkkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD------------EAKK 1477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 629 VLSEKCEAvvAELKQGDQRCRERVAQVQEQHElEIKKLKELMSATEKIRREKWINEKTKKiKEITVRGLEPEIQKLIAKH 708
Cdd:PTZ00121 1478 KAEEAKKA--DEAKKKAEEAKKKADEAKKAAE-AKKKADEAKKAEEAKKADEAKKAEEAK-KADEAKKAEEKKKADELKK 1553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 709 KQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAE 788
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 789 EKERLGQQAARQRVELEELRQQLEESSAaltralraefersreeqeRRHQMELKALKDQLEAERqawvascAKKEEawll 868
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKI------------------KAAEEAKKAEEDKKKAEE-------AKKAE---- 1684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 869 trerelkEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKgrlgEAE 948
Cdd:PTZ00121 1685 -------EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK----KDE 1753
|
650 660 670
....*....|....*....|....*....|
gi 157819725 949 GEKERLQSLLRQKEKELDDLRVVNTQMCSE 978
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
757-1060 |
8.19e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 8.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 757 RERAQQRLE---QHLEQEQRALEQQRRRLytevaeekERLGQQA--ARQRVELEELRQQLEESSAALTRAlraefersre 831
Cdd:COG1196 174 KEEAERKLEateENLERLEDILGELERQL--------EPLERQAekAERYRELKEELKELEAELLLLKLR---------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 832 eqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIELvihRLEADMTLAKEESERAAENR 911
Cdd:COG1196 236 --------ELEAELEELEAELEE-----LEAELEELEAELAELEAELEELRLELEEL---ELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 912 VKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQvVRQEFA 991
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA-ELAEAE 378
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157819725 992 EQLAASQEETQRVKAELAELRARQQmELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQ 1060
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
563-1062 |
9.68e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 9.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 563 KLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAvvAELK 642
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA--DEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 643 QGDQRCRERVAQVQEQHElEIKKLKELMSATEKIRREKWinEKTKKIKEITVRGLEPEIQKLIAKhKQEVRRLRGLHEAE 722
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAE-EAKKAAEAAKAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKADAA-KKKAEEKKKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 723 LQQREEQAAQRHLRQAEELREHLEREREalgQQERERAQQRLEQHLEQEQRALEQQRRrlyTEVAEEKERLGQQAARQRv 802
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEAKK---KAEEKKKADEAKKKAEEAKKADEAKKK---AEEAKKAEEAKKKAEEAK- 1470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 803 ELEELRQQLEESSAAlTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGR 882
Cdd:PTZ00121 1471 KADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 883 DQEIELVIHRLEAdmtLAKEESERAAENRVKRVRDKYEtelsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKE 962
Cdd:PTZ00121 1550 ELKKAEELKKAEE---KKKAEEAKKAEEDKNMALRKAE----EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 963 KELDDLRVVNTQMCSERASLAQVVRQefAEQLAASQEETQRVKAELA------ELRARQQMELDEVHRRVKTALARKEA- 1035
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAAEEAkkaeedKKKAEEAKKAEEDEKKAAEALKKEAEe 1700
|
490 500
....*....|....*....|....*....
gi 157819725 1036 --AVNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:PTZ00121 1701 akKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
751-1043 |
1.55e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 751 ALGQQERERAQQRLEQHLEQEQRALEQQRRRLyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSR 830
Cdd:TIGR02168 669 NSSILERRREIEELEEKIEELEEKIAELEKAL-AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 831 EEQERRHQM-----ELKALKDQLEAERQAWVASCAKKE--EAWLLTRERELKEEIRKGRDQEIELVIHRLEA-------- 895
Cdd:TIGR02168 748 RIAQLSKELteleaEIEELEERLEEAEEELAEAEAEIEelEAQIEQLKEELKALREALDELRAELTLLNEEAanlrerle 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 896 DMTLAKEESERAAENRVKRVRDKYEtELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQM 975
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157819725 976 cSERASLAQVVRQEFAEQLAASQEETQRVKAELAE----LRARQQMELDEV---HRRVKTALARKEAAVNSLRKQ 1043
Cdd:TIGR02168 907 -ESKRSELRRELEELREKLAQLELRLEGLEVRIDNlqerLSEEYSLTLEEAealENKIEDDEEEARRRLKRLENK 980
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
658-1062 |
2.45e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 61.32 E-value: 2.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 658 QHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQ 737
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 738 AEELREHLEREREALgqQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAA 817
Cdd:COG4717 144 LPERLEELEERLEEL--RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 818 LTRALRAEFERSREEQERRHQMELKALKDQLEAERQ-----------------------------AWVASCAKKEEAWLL 868
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAAllallglggsllsliltiagvlflvlgllALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 869 TRERELK--EEIRKGRDQEIELVIHRLEADMTLAKEESeRAAENRVKRVRDKyETELSELEQsERKLQERCTELKGRLGE 946
Cdd:COG4717 302 KEAEELQalPALEELEEEELEELLAALGLPPDLSPEEL-LELLDRIEELQEL-LREAEELEE-ELQLEELEQEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 947 AEGEKE----RLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVR-----------QEFAEQLAASQEETQRVKAELAEL 1011
Cdd:COG4717 379 AGVEDEeelrAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeeeleeelEELEEELEELEEELEELREELAEL 458
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 157819725 1012 RAR-QQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:COG4717 459 EAElEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
312-928 |
4.33e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 4.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 312 RQEEAARKKAREEKARQARQAAIQELQQKRAQKAREVEHRPPKERPETRALEQPRPTQE---PPSMPSSVTHPKANNAGA 388
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkADEAKKAEEKKKADEAKK 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 389 SLYPTGPADPCPPASESFPERQPSLEDKPQDAHSQVEAREDLAALASTRSKTRARATLDDLLDTLKLLEEEPEPLLHPKA 468
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 469 YRQDRYAWMDEEEDTNpltadNLEKFGKLSAAPGPPDDGTLLSEAKLQSimtflDEMEKSGQERPAPWRESLVLEAGPRS 548
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKK-----KADELKKAAAAKKKADEAKKKAEEKKKA-----DEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 549 LELG--SEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIED 626
Cdd:PTZ00121 1460 EEAKkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 627 KKVLS-EKCEAV--VAELKQGDQ-RCRERVAQVQEQHELEIKKLKELMSATEK-IRREKWINEKTKKIKEITVRGLEPEI 701
Cdd:PTZ00121 1540 KKAEEkKKADELkkAEELKKAEEkKKAEEAKKAEEDKNMALRKAEEAKKAEEArIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 702 QKLIAKHKQEVRRlRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQrLEQHLEQEQRALEQQRRR 781
Cdd:PTZ00121 1620 IKAEELKKAEEEK-KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE-AKKAEEDEKKAAEALKKE 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 782 lyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSReeqerrhqmelKALKDQLEAERQAWVASCAK 861
Cdd:PTZ00121 1698 --AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK-----------KAEEAKKDEEEKKKIAHLKK 1764
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 862 KEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKR---VRDKYETELSELEQ 928
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvINDSKEMEDSAIKE 1834
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
557-1060 |
8.80e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 8.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 557 TSVMRLKLELEEKKQAMVLLQRAL----AQQRDLaTRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSE 632
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELyalaNEISRL-EQQKQILRERL-ANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 633 KCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELmsatEKIRREkwINEKTKKIKEI--TVRGLEPEIQKLIAKHKQ 710
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSK--VAQLELQIASLnnEIERLEARLERLEDRRER 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 711 EVRRLRGLH-EAELQQREEQAAQ--RHLRQAEELREHLEREREALG--QQERERAQQRL------EQHLEQEQRALEQQR 779
Cdd:TIGR02168 419 LQQEIEELLkKLEEAELKELQAEleELEEELEELQEELERLEEALEelREELEEAEQALdaaereLAQLQARLDSLERLQ 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 780 RRLYT------EVAEEKERLGQQAAR--QRVELEE-----LRQQLEESSAAL-----TRALRAEFERSREEQERRHQMEL 841
Cdd:TIGR02168 499 ENLEGfsegvkALLKNQSGLSGILGVlsELISVDEgyeaaIEAALGGRLQAVvvenlNAAKKAIAFLKQNELGRVTFLPL 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 842 KALKDQL----EAERQAWVASC-------------------------------------AKKEEA--------------- 865
Cdd:TIGR02168 579 DSIKGTEiqgnDREILKNIEGFlgvakdlvkfdpklrkalsyllggvlvvddldnalelAKKLRPgyrivtldgdlvrpg 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 866 WLLTRERELKEEIRKGRDQEIElvihRLEADMTLAkEESERAAENRVKRVRDK---YETELSELEQSERKLQERCTELKG 942
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREIE----ELEEKIEEL-EEKIAELEKALAELRKEleeLEEELEQLRKELEELSRQISALRK 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 943 RLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASlAQVVRQEFAEQLAASQEETQRVKAELAELRARQQmELDEV 1022
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE-AEEELAEAEAEIEELEAQIEQLKEELKALREALD-ELRAE 811
|
570 580 590
....*....|....*....|....*....|....*...
gi 157819725 1023 HRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQ 1060
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
752-1056 |
1.50e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 752 LGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAE-EKERLGQQAARQRVELEELRQQLEESSAALTrALRAEFERSR 830
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALErQKEAIERQLASLEEELEKLTEEISELEKRLE-EIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 831 EEQERRHQMELKALKDQLEaERQAWVASCAKKEEAwlltRERELKEEirKGRDQEIELVIHRLEADMTLAKEESER---- 906
Cdd:TIGR02169 279 KKIKDLGEEEQLRVKEKIG-ELEAEIASLERSIAE----KERELEDA--EERLAKLEAEIDKLLAEIEELEREIEEerkr 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 907 --AAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ 984
Cdd:TIGR02169 352 rdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157819725 985 VVRQ--EFAEQLAASQEETQRVKAELAELRArQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEE 1056
Cdd:TIGR02169 432 IEAKinELEEEKEDKALEIKKQEWKLEQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
620-1059 |
3.14e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 3.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 620 IDQLIEDKkvlsEKCEAVVAELKQGD--QRCRERVAQVQEQHELEIKKLKELMSATEKIRR-----EKWINEKTKKIKEI 692
Cdd:PRK03918 137 IDAILESD----ESREKVVRQILGLDdyENAYKNLGEVIKEIKRRIERLEKFIKRTENIEElikekEKELEEVLREINEI 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 693 tvRGLEPEIQKLIAKHKQEVRRLRGLHE--AELQQREEQAAQR------HLRQAEELREHLEREREALGQQERERAQQRL 764
Cdd:PRK03918 213 --SSELPELREELEKLEKEVKELEELKEeiEELEKELESLEGSkrkleeKIRELEERIEELKKEIEELEEKVKELKELKE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 765 EQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAA---RQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMEL 841
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINgieERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 842 KALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELviHRLEADMTLAKEESERA-----------AEN 910
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKKAkgkcpvcgrelTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 911 RVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKeLDDLRvvntqmcseraSLAQVVRQEF 990
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL-AEQLK-----------ELEEKLKKYN 516
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157819725 991 AEQLAASQEETQRVKAELAELRARQQMELDEVHRrvKTALARKEAAVNslRKQHEAAEKRADHLEELLE 1059
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK--LEELKKKLAELE--KKLDELEEELAELLKELEE 581
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
636-969 |
4.04e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 636 AVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEItvrgLEPEIQKLIAKHKQEVRRL 715
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKE----KREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 716 RGLHEAELQQREEQAAQRhlrqaeelrehlEREREALGQ------QERERAQQRLEQHLEQEQRALEQQRRRLYTEVA-- 787
Cdd:TIGR02169 239 KEAIERQLASLEEELEKL------------TEEISELEKrleeieQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAsl 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 788 ----EEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSRE-----EQERRHQMELKALKDQLEAERQAWVAS 858
Cdd:TIGR02169 307 ersiAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteeyAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 859 CAK-KEEAWLLTRER-ELKEEIRKGRDQEIELVIHRLEADMTLAkeeserAAENRVKRVRDKYETELSELEQSERKLQer 936
Cdd:TIGR02169 387 LKDyREKLEKLKREInELKRELDRLQEELQRLSEELADLNAAIA------GIEAKINELEEEKEDKALEIKKQEWKLE-- 458
|
330 340 350
....*....|....*....|....*....|...
gi 157819725 937 ctELKGRLGEAEGEKERLQSLLRQKEKELDDLR 969
Cdd:TIGR02169 459 --QLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
590-963 |
4.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 590 RVKETEKELSRQLRQQKEQYEATiQRHLSFIDQLIEDKKVLSEKceaVVAELKQGDQRCRERVAQVQEQHELEIKKLKEL 669
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEKA-ERYKELKAELRELELALLVL---RLEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 670 MSATEKIRREkwINEKTKKIKeitvrglepEIQKLIAKHKQEVRRLrglheaELQQREEQAAQRHLRQAeelrehlerer 749
Cdd:TIGR02168 266 EEKLEELRLE--VSELEEEIE---------ELQKELYALANEISRL------EQQKQILRERLANLERQ----------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 750 ealgQQERERAQQRLEQHLEQEQRALEQQRRRLyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERS 829
Cdd:TIGR02168 318 ----LEELEAQLEELESKLDELAEELAELEEKL-EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 830 REEQERRHQME-LKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIrKGRDQEIELVIHRLEADMTLAKEESERAA 908
Cdd:TIGR02168 393 LQIASLNNEIErLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELE 471
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 157819725 909 ENrvkrvrdkyETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEK 963
Cdd:TIGR02168 472 EA---------EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
596-962 |
4.37e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 596 KELSRQLRQQKEQYE------ATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKEL 669
Cdd:TIGR02168 680 EELEEKIEELEEKIAelekalAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 670 MSATEKIRREkwINEKTKKIKEitvrgLEPEIQKLiakhkqevrrlrglhEAELQQREEQAAQrhlrqaeeLREHLERER 749
Cdd:TIGR02168 760 EAEIEELEER--LEEAEEELAE-----AEAEIEEL---------------EAQIEQLKEELKA--------LREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 750 EALGQQERERAQQRLEqhLEQEQRALEQQRRRLyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTralraefers 829
Cdd:TIGR02168 810 AELTLLNEEAANLRER--LESLERRIAATERRL-EDLEEQIEELSEDIESLAAEIEELEELIEELESELE---------- 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 830 reeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAae 909
Cdd:TIGR02168 877 ----------ALLNERASLEEALAL-----LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID-- 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157819725 910 NRVKRVRDKYETELSELEQ-------SERKLQERCTELKG---RLG--------EAEGEKERLQSLLRQKE 962
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEAlenkiedDEEEARRRLKRLENkikELGpvnlaaieEYEELKERYDFLTAQKE 1010
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
709-1013 |
5.54e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 709 KQEVRRLRG-LHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERER--AQQRLEQHLEQEQRALEQQRRRLYTE 785
Cdd:TIGR02168 676 RREIEELEEkIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 786 VAEEKERLGQQAAR------QRVELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDqlEAERQAWVASC 859
Cdd:TIGR02168 756 LTELEAEIEELEERleeaeeELAEAEAEIEELEAQIEQLKEELKALREALDEL-----RAELTLLNE--EAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 860 AKKEEAWLLTRERELKEEIRKGRDQeIELVIHRLEaDMTLAKEESERAAEnRVKRVRDKYETELSELEQSERKLQERCTE 939
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSED-IESLAAEIE-ELEELIEELESELE-ALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157819725 940 LKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRA 1013
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
700-1060 |
5.91e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 5.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 700 EIQKLIAKHKQEVRRLRGLHEAELQQREEqaAQRHLRQAEELREHLererealgQQERERAQQRLEQhLEQEQRALEQQR 779
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSD--ASRKIGEIEKEIEQL--------EQEEEKLKERLEE-LEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 780 rrlyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRalraefersreeqerRHQMELKALKDQLEAERQAWVASC 859
Cdd:TIGR02169 754 ----ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH---------------SRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 860 AKKEEAwllTRERELKEEIRKGRDQEIElvihRLEADMTLAKEESERAAENRVKRVRDKyETELSELEQSERKLQERCTE 939
Cdd:TIGR02169 815 REIEQK---LNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGKKEEL-EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 940 LKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVKAEL------AELRA 1013
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKR----KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELsledvqAELQR 962
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 157819725 1014 RQQ--MELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQ 1060
Cdd:TIGR02169 963 VEEeiRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
754-1062 |
1.07e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 754 QQERERAQQRLEQHLE--QEQRALEQQRRRLYTEVAE---EKERLGQQAARQRVELEELRQQLEESSAaltralRAEFER 828
Cdd:PRK02224 233 RETRDEADEVLEEHEErrEELETLEAEIEDLRETIAEterEREELAEEVRDLRERLEELEEERDDLLA------EAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 829 SREEQERRHQMELKALKDQLEAE-RQAWVASCAKKEEAWLLTRERELKEEirkgRDQEIELVIHRLEADMTLAKEEsera 907
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRlEECRVAAQAHNEEAESLREDADDLEE----RAEELREEAAELESELEEAREA---- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 908 aenrvkrvRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSL---LRQKEKELD-DLRVVNTQMCSERASLA 983
Cdd:PRK02224 379 --------VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREErdeLREREAELEaTLRTARERVEEAEALLE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 984 Q---------VVRQEFAEQLAASQEETQRVKAELAELRARQqmelDEVHRRVKTALARKEAAvnslrKQHEAAEKRADHL 1054
Cdd:PRK02224 451 AgkcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEV----EEVEERLERAEDLVEAE-----DRIERLEERREDL 521
|
....*...
gi 157819725 1055 EELLEQHK 1062
Cdd:PRK02224 522 EELIAERR 529
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
554-852 |
2.34e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 554 EGTTSVMRLKlELEEKKQAMVLLQRALAQQRDLATRRVKETEKELS------RQLRQQKEQYEATIQRHLSFIDQLIEDK 627
Cdd:TIGR02168 226 ELALLVLRLE-ELREELEELQEELKEAEEELEELTAELQELEEKLEelrlevSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 628 KVLSEKCEAVVAELKQgdqrcrervaqVQEQHELEIKKLKELmsATEKIRREKWINEKTKKIKEitvrgLEPEIQKLIAK 707
Cdd:TIGR02168 305 QILRERLANLERQLEE-----------LEAQLEELESKLDEL--AEELAELEEKLEELKEELES-----LEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 708 HKQEVRRLRGLHEAELQQREEQAAqrhLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVA 787
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQ---LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157819725 788 EEKERLGQQAARqrveLEELRQQLEESSAALTRALRAefERSREEQERRHQMELKALKDQLEAER 852
Cdd:TIGR02168 444 ELEEELEELQEE----LERLEEALEELREELEEAEQA--LDAAERELAQLQARLDSLERLQENLE 502
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
561-969 |
2.36e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 561 RLKLELEEKKQAMVLLQRALAQQRDLATRrvKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAE 640
Cdd:COG4717 106 ELEAELEELREELEKLEKLLQLLPLYQEL--EALEAEL-AELPERLEELEERLEELRELEEELEELEAELAELQEELEEL 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 641 LKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREkwINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHE 720
Cdd:COG4717 183 LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE--LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 721 AELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRrrlytEVAEEKERLGQQAARQ 800
Cdd:COG4717 261 LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE-----ELEELLAALGLPPDLS 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 801 RVELEELRQQLEESSAALTRAlraefersreeqerrHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRK 880
Cdd:COG4717 336 PEELLELLDRIEELQELLREA---------------EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 881 grDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEgEKERLQSLLRQ 960
Cdd:COG4717 401 --KEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE-EDGELAELLQE 477
|
....*....
gi 157819725 961 KEKELDDLR 969
Cdd:COG4717 478 LEELKAELR 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
562-1017 |
4.08e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 4.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 562 LKLELEEKKQAmvlLQRALAQQRDLATRRVKETEKELsRQLRQQKEQYEatiqrhlsfidQLIEDKKVLSEKCEAVVAEL 641
Cdd:COG4717 47 LLERLEKEADE---LFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYA-----------ELQEELEELEEELEELEAEL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 642 KQGDQRcRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRglEPEIQKLIAKHKQEVRRLRGLHEA 721
Cdd:COG4717 112 EELREE-LEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEE--LEELEAELAELQEELEELLEQLSL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 722 ELQQREEQAAQRHLRQAEELREHlererealgQQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQR 801
Cdd:COG4717 189 ATEEELQDLAEELEELQQRLAEL---------EEELEEAQEELEE-LEEELEQLENELEAAALEERLKEARLLLLIAAAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 802 VELEELRQQLEESS-----------AALTRALRAEFERSREEQERRHQMELKALKDQLE-AERQAWVASCAKKEEA---- 865
Cdd:COG4717 259 LALLGLGGSLLSLIltiagvlflvlGLLALLFLLLAREKASLGKEAEELQALPALEELEeEELEELLAALGLPPDLspee 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 866 --WLLTRERELKEEIRKGRDQEIELVIHRLE----ADMTLAKEESERAAENRVKRVRdKYETELSELEQSERKLQERCTE 939
Cdd:COG4717 339 llELLDRIEELQELLREAEELEEELQLEELEqeiaALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 940 LKGRLGEAEGE--KERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQM 1017
Cdd:COG4717 418 LEELLEALDEEelEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
589-1062 |
6.65e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 6.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 589 RRVKETEKELsRQLRQQKEQYEATIQRhLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQ-HELE--IKK 665
Cdd:PRK03918 207 REINEISSEL-PELREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEiEELEekVKE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 666 LKELM-SATEKIRREKWINEKTKKIKEI-----TVRGLEPEIQKLIAKHKQEVRRLRGLHE--AELQQREEQAAQRH--L 735
Cdd:PRK03918 285 LKELKeKAEEYIKLSEFYEEYLDELREIekrlsRLEEEINGIEERIKELEEKEERLEELKKklKELEKRLEELEERHelY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 736 RQAEELREHLEREREALGQQERERAQQRLE------QHLEQEQRALEQQRRRLYTEVAEEKERL---------------- 793
Cdd:PRK03918 365 EEAKAKKEELERLKKRLTGLTPEKLEKELEelekakEEIEEEISKITARIGELKKEIKELKKAIeelkkakgkcpvcgre 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 794 ------GQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQL-EAERQAWVASCAKKEEAW 866
Cdd:PRK03918 445 lteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLkELEEKLKKYNLEELEKKA 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 867 -----LLTRERELKEEIR--KGRDQEIELVIHRLEA-DMTLAKEESERAA-ENRVKRVRDKYETELSELEQSERKLQERC 937
Cdd:PRK03918 525 eeyekLKEKLIKLKGEIKslKKELEKLEELKKKLAElEKKLDELEEELAElLKELEELGFESVEELEERLKELEPFYNEY 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 938 TELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQvVRQEFaeqlaaSQEETQRVKAELAELRARqqm 1017
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE-LEKKY------SEEEYEELREEYLELSRE--- 674
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 157819725 1018 eldevhrrvktaLARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:PRK03918 675 ------------LAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
578-1062 |
1.20e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 578 RALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVaelkqgdQRCRERVAQVQE 657
Cdd:pfam15921 202 KKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLL-------QQHQDRIEQLIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 658 QHELEIKKLKELMS-----ATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHEAELQQREEQ--A 730
Cdd:pfam15921 275 EHEVEITGLTEKASsarsqANSIQSQLEIIQEQARNQNSMYMRQLS-DLESTVSQLRSELREAKRMYEDKIEELEKQlvL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 731 AQRHLRQAEELREHLEREREALGQQereraQQRLEQHLEQEQRALEQQRrrlytevaEEKERLGQQAARQRVELEELRQQ 810
Cdd:pfam15921 354 ANSELTEARTERDQFSQESGNLDDQ-----LQKLLADLHKREKELSLEK--------EQNKRLWDRDTGNSITIDHLRRE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 811 LEESSAALTRAlraefersreeqerrhQMELKALKDQLEAERQAWVASCAKKEEAW----LLTRERELKEEIRKGRDQEI 886
Cdd:pfam15921 421 LDDRNMEVQRL----------------EALLKAMKSECQGQMERQMAAIQGKNESLekvsSLTAQLESTKEMLRKVVEEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 887 ELVIHRLE------ADMTLAKEESERAAE---NRVKRVRDKYETELSELEQSE------RKLQERCTELKGRLgeaeGEK 951
Cdd:pfam15921 485 TAKKMTLEssertvSDLTASLQEKERAIEatnAEITKLRSRVDLKLQELQHLKnegdhlRNVQTECEALKLQM----AEK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 952 ERLQSLLRQKEKELddlrvvnTQMCSERASLAQVVRQEFAeQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALA 1031
Cdd:pfam15921 561 DKVIEILRQQIENM-------TQLVGQHGRTAGAMQVEKA-QLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
490 500 510
....*....|....*....|....*....|.
gi 157819725 1032 RKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVK 663
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
763-1069 |
3.66e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.38 E-value: 3.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 763 RLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMElk 842
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ-- 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 843 ALKDQLE---AERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEA---------------DMTLAKEES 904
Cdd:pfam12128 664 SEKDKKNkalAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallKAAIAARRS 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 905 ERAAEnrVKRVRDKYETELSELEQSERKLQERCTELKGRlgeaegeKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ 984
Cdd:pfam12128 744 GAKAE--LKALETWYKRDLASLGVDPDVIAKLKREIRTL-------ERKIERIAVRRQEVLRYFDWYQETWLQRRPRLAT 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 985 VVRQ------EFAEQLAASQEETQRVKAELAELRA---RQQMELDEVHRRVK---TALARKEAAVNSLRKQHEAAEkRAD 1052
Cdd:pfam12128 815 QLSNieraisELQQQLARLIADTKLRRAKLEMERKaseKQQVRLSENLRGLRcemSKLATLKEDANSEQAQGSIGE-RLA 893
|
330
....*....|....*..
gi 157819725 1053 HLEELLEQHKGPSLSSK 1069
Cdd:pfam12128 894 QLEDLKLKRDYLSESVK 910
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
770-1016 |
3.78e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 770 QEQRALEQQRRRLYTEVAEEKERLgQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDQLE 849
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-AALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----EAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 850 AERQAwvascakkeeawLLTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSE 925
Cdd:COG4942 94 ELRAE------------LEAQKEELAELLRAlyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 926 LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLrvvntqmcseraslaQVVRQEFAEQLAASQEETQRVK 1005
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL---------------EKELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 157819725 1006 AELAELRARQQ 1016
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
537-936 |
3.93e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 537 RESLVLEAGPRSLELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRH 616
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREK 709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 617 LSFIDQLIEDKKVLsekceavvaelkqgDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRG 696
Cdd:pfam02463 710 EELKKLKLEAEELL--------------ADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 697 LEPEIQKLIAKHKQEVRRLRglhEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALE 776
Cdd:pfam02463 776 LAEEREKTEKLKVEEEKEEK---LKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 777 QQRRRLYTEVAEEKERLgQQAARQRVELEELRQQLEESSAALTralraefersreEQERRHQMELKALKDQLEAERQAWV 856
Cdd:pfam02463 853 EEELERLEEEITKEELL-QELLLKEEELEEQKLKDELESKEEK------------EKEEKKELEEESQKLNLLEEKENEI 919
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 857 ASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEAD-----MTLAKEESERAAENRVKRVRDKYETELSELEQSER 931
Cdd:pfam02463 920 EERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEernkrLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER 999
|
....*
gi 157819725 932 KLQER 936
Cdd:pfam02463 1000 LEEEK 1004
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
563-1062 |
4.37e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 4.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 563 KLELEEKKQAMVLLQRALAQQRDlatrrvKETEKELSRQLRQQKEQYEATIQRhlsfidQLIEDKKVLSEKCEAVVAELK 642
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQ------KTTLTQKLQSLCKELDILQREQAT------IDTRTSAFRDLQGQLAHAKKQ 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 643 QGDQRCRERVAQVQEQHELEIKKLKELMsATEKIRREKWINEKTKKIKEITVRglEPEIQKLIAKHKQEVRRLRGLHEAE 722
Cdd:TIGR00618 433 QELQQRYAELCAAAITCTAQCEKLEKIH-LQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGS 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 723 LQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQrrrlyTEVAEEKERLGQQAARQRV 802
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM-----QEIQQSFSILTQCDNRSKE 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 803 ELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQawvaSCAKKEEAWLLTRERELkEEIRKGR 882
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQ----QCSQELALKLTALHALQ-LTLTQER 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 883 DQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYET----------ELSELEQSERKLQERCTELKGRLGEAEGEKE 952
Cdd:TIGR00618 660 VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMlaqcqtllreLETHIEEYDREFNEIENASSSLGSDLAARED 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 953 RLQSLLRQ---------KEKELDDLR-----VVNTQMCSERASLAQVV------RQEFAEQLAASQEETQRVKAELAELR 1012
Cdd:TIGR00618 740 ALNQSLKElmhqartvlKARTEAHFNnneevTAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDIL 819
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 157819725 1013 ARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
561-888 |
4.81e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 4.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 561 RLKLELEEKKQAMVLLQRALAQQ---RDLATRRVKETEKELSRQ---LRQQKEQYE---ATIQRHLSFIDQLIEDkkvLS 631
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAeryQALLKEKREYEGYELLKEkeaLERQKEAIErqlASLEEELEKLTEEISE---LE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 632 EKCEAVVAELKQgdqrCRERVAQVQEQHELEIK-KLKELMSATEKIRRekwinekTKKIKEITVRGLEPEIQKLIAkhkq 710
Cdd:TIGR02169 265 KRLEEIEQLLEE----LNKKIKDLGEEEQLRVKeKIGELEAEIASLER-------SIAEKERELEDAEERLAKLEA---- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 711 EVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYtEVAEEK 790
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-ELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 791 ERLGQQAARQRVELEELRQQLEESSAALTrALRAEFERSREEQERRHQmELKALKDQLEAERQAWVA------------S 858
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEW-KLEQLAADLSKYEQELYDlkeeydrvekelS 486
|
330 340 350
....*....|....*....|....*....|
gi 157819725 859 CAKKEEAWLLTRERELKEEIRKGRDQEIEL 888
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGRAVEEVL 516
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
667-854 |
4.88e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 667 KELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQA-AQRHLRQAEELREHL 745
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 746 EREREALGQQERERAQQRLEQhLEQEQRALEQ---QRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRAL 822
Cdd:COG4913 322 REELDELEAQIRGNGGDRLEQ-LEREIERLEReleERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190
....*....|....*....|....*....|..
gi 157819725 823 RAEFERSREEQERRHQmeLKALKDQLEAERQA 854
Cdd:COG4913 401 EALEEALAEAEAALRD--LRRELRELEAEIAS 430
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
549-1063 |
5.05e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 549 LELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRqqkeqyEATIQRHLSFIDQLIEDKK 628
Cdd:TIGR00606 431 IRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAER------ELSKAEKNSLTETLKKEVK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 629 VLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKlKELMSATEKIRREKW--INEKTKKIKEI-TVRGLEPEIQKLI 705
Cdd:TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT-KDKMDKDEQIRKIKSrhSDELTSLLGYFpNKKQLEDWLHSKS 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 706 AKHKQEVRRLRGLHE--AELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQ--EQRALEQQRRR 781
Cdd:TIGR00606 584 KEINQTRDRLAKLNKelASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKssKQRAMLAGATA 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 782 LYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAK 861
Cdd:TIGR00606 664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 862 KEEAWLLTRERELKEEIRKGR------DQEIELVIHRLEA------DMTLAKEESERAAENRVKRVRDKYETELSELEQS 929
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKndieeqETLLGTIMPEEESakvcltDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 930 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVV--RQEFAEQLAASQEETQRVKAE 1007
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELSTEVQSLIRE 903
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 157819725 1008 LAElrARQQMELDEVHRrvKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHKG 1063
Cdd:TIGR00606 904 IKD--AKEQDSPLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
756-1062 |
9.10e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 9.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 756 ERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQER 835
Cdd:pfam02463 191 DLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQV 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 836 RHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKgrDQEIELVIHRLEADMTLAKEESERAaenrvkrv 915
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK--LKESEKEKKKAEKELKKEKEEIEEL-------- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 916 rdkyETELSELEqserklqerctELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLA 995
Cdd:pfam02463 341 ----EKELKELE-----------IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157819725 996 ASQEETQRVKAELAELRARQQMELDEvhrrVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEI----LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
561-922 |
9.88e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 9.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 561 RLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAE 640
Cdd:COG4717 118 LEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL-EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 641 LKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKE-----------ITVRGLEPEI-------- 701
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaalLALLGLGGSLlsliltia 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 702 --------------------QKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQ 761
Cdd:COG4717 277 gvlflvlgllallflllareKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 762 QRLEQHLEQEQraLEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMEL 841
Cdd:COG4717 357 EELEEELQLEE--LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEEL 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 842 KALKDQLEAerqawvascAKKEEAWLLTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEE--SERAAENRVKRV 915
Cdd:COG4717 435 EELEEELEE---------LEEELEELREELAELEAELEQleedGELAELLQELEELKAELRELAEEwaALKLALELLEEA 505
|
....*..
gi 157819725 916 RDKYETE 922
Cdd:COG4717 506 REEYREE 512
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
767-1057 |
1.13e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 767 HLEQEQRALEQQRRRLYTEVAEEkERLGQQAARQRVELEElRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKD 846
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEQ-ERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 847 QLEaERQAWVASCAKKEEAWLLTRERELkEEIRKGRDQEIELVIHRLEADMTLAKEESER---AAENRVKRVRDKYETEL 923
Cdd:pfam17380 354 RQE-ERKRELERIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERqrkIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 924 SELEQSERKLQERCTELKgRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ----VVRQEFAEQLAASQE 999
Cdd:pfam17380 432 ARQREVRRLEEERAREME-RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEqrrkILEKELEERKQAMIE 510
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 157819725 1000 ETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEEL 1057
Cdd:pfam17380 511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
900-1056 |
1.59e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 900 AKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDlRVVNTQMCSER 979
Cdd:COG4942 41 KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE-LLRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 980 ASLAQVV---------------------RQEFAEQLAASQEETQRVKAELAELRARQQ---MELDEVHRRVKTALARKEA 1035
Cdd:COG4942 120 PPLALLLspedfldavrrlqylkylapaRREQAEELRADLAELAALRAELEAERAELEallAELEEERAALEALKAERQK 199
|
170 180
....*....|....*....|.
gi 157819725 1036 AVNSLRKQHEAAEKRADHLEE 1056
Cdd:COG4942 200 LLARLEKELAELAAELAELQQ 220
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
700-895 |
2.10e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 700 EIQKLIAKHKQEVRRL---RGLHEAELQQREEQAAQRHLRQAEELREHLEREreALGQQERERAQQRLEQhLEQEQRALE 776
Cdd:COG4913 239 RAHEALEDAREQIELLepiRELAERYAAARERLAELEYLRAALRLWFAQRRL--ELLEAELEELRAELAR-LEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 777 QQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALR--AEFERSREEQERRHQMELKALKDQLEAERQA 854
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRArlEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 157819725 855 WvascaKKEEAWLLTRERELKEEIRKGRDQ--EIELVIHRLEA 895
Cdd:COG4913 396 L-----EEELEALEEALAEAEAALRDLRRElrELEAEIASLER 433
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
697-1016 |
2.18e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 697 LEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALE 776
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 777 QQRRRLYTEVAEEKERLGQQ----AARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAER 852
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENkeeeKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 853 QAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETE---LSELEQS 929
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEkeaQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 930 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELA 1009
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
....*..
gi 157819725 1010 ELRARQQ 1016
Cdd:pfam02463 495 LEERSQK 501
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
562-1005 |
2.34e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 562 LKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQK---EQYEATIQRHLSFIDQLIEDKKVLSEKC---- 634
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLELQEEPCPLCGSCihpn 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 635 -EAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVR 713
Cdd:TIGR00618 515 pARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 714 RLRGLHEAELQQREEQAAQRHlrqaeelrEHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERL 793
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQH--------ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 794 GQQaarQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEeawLLTRERE 873
Cdd:TIGR00618 667 IRV---LPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD---LAAREDA 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 874 LKEEIRKGRDQEIELVIHRLEADMTlaKEESERAAENRVkrvrDKYETELSELEQSERKLQERCTELKGRLGEAEGE-KE 952
Cdd:TIGR00618 741 LNQSLKELMHQARTVLKARTEAHFN--NNEEVTAALQTG----AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPS 814
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 157819725 953 RLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQ--EFAEQLAASQEETQRVK 1005
Cdd:TIGR00618 815 DEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQA 869
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
561-941 |
2.36e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 561 RLKLELEEKKQAMVLLQRALaqqrDLATRRVKETEKELsrqlrQQKEQYEATIQRHlsfIDQLIEDKKVLSEKCEAVVAE 640
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQEL----SDASRKIGEIEKEI-----EQLEQEEEKLKER---LEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 641 LKqgdqrcreRVAQVQEQHELEIKKLKELMSATE-KIRREKW--INEKTKKIKEITVR--GLEPEIQKLIAKHKQEVRRL 715
Cdd:TIGR02169 760 LK--------ELEARIEELEEDLHKLEEALNDLEaRLSHSRIpeIQAELSKLEEEVSRieARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 716 RGLHEAELQQREEQAAQRHLRQAEELREHLEREREalgQQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLGQ 795
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL---EEELEELEAALRD-LESRLGDLKKERDELEAQLRELERKIEE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 796 QAArqrvELEELRQQLEESSAALTRAlraefersreeqerrhQMELKALKDQLEAErqawvascakKEEAWLLTRERELK 875
Cdd:TIGR02169 908 LEA----QIEKKRKRLSELKAKLEAL----------------EEELSEIEDPKGED----------EEIPEEELSLEDVQ 957
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157819725 876 EEIrkgrdQEIELVIHRLEADMTLAKEESERAAE--NRVKRVRDKYETELSELeqseRKLQERCTELK 941
Cdd:TIGR02169 958 AEL-----QRVEEEIRALEPVNMLAIQEYEEVLKrlDELKEKRAKLEEERKAI----LERIEEYEKKK 1016
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
718-1041 |
2.83e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 718 LHEAELQQREEQAAQRHLRQAEELREHLEREREALGQ--QERERAQQRLEQhLEQEQRALEQQRRRLyTEVAEEKERLGQ 795
Cdd:COG3096 895 LEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSdpEQFEQLQADYLQ-AKEQQRRLKQQIFAL-SEVVQRRPHFSY 972
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 796 QAARQRVE-----LEELRQQLEESSAALTRALRAefersreeqerrhqmeLKALKDQLEAERQAWVAscakkeeawlLTR 870
Cdd:COG3096 973 EDAVGLLGensdlNEKLRARLEQAEEARREAREQ----------------LRQAQAQYSQYNQVLAS----------LKS 1026
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 871 ERELKEEIRKGRDQEIELVIHRLEADMtlakeeSERAAENRvkrvrdkyetelSELEQSERKLQERCTELKGRLGEAEGE 950
Cdd:COG3096 1027 SRDAKQQTLQELEQELEELGVQADAEA------EERARIRR------------DELHEELSQNRSRRSQLEKQLTRCEAE 1088
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 951 KERLQSLLRQKEKELDDLRvvnTQMCSERASLAQVVRqefaeqLAA-SQEETQRVKAELAELRARQQME-LDEVHRRVKT 1028
Cdd:COG3096 1089 MDSLQKRLRKAERDYKQER---EQVVQAKAGWCAVLR------LARdNDVERRLHRRELAYLSADELRSmSDKALGALRL 1159
|
330
....*....|...
gi 157819725 1029 ALARKEAAVNSLR 1041
Cdd:COG3096 1160 AVADNEHLRDALR 1172
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
906-1060 |
3.18e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 906 RAAENRVKRVRDKY-----ETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLrVVNTQMCSERA 980
Cdd:COG3206 192 EEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSPVIQQLRA 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 981 SLAQVVRQ--EFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELL 1058
Cdd:COG3206 271 QLAELEAElaELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
..
gi 157819725 1059 EQ 1060
Cdd:COG3206 351 AE 352
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
872-1055 |
3.83e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 872 RELKEEIRKGRDQeielvIHRLEAdmtlAKEESERAAENRVKRVRDKYETELSELEQSERK---LQERCTELKGRLGEAE 948
Cdd:COG4913 238 ERAHEALEDAREQ-----IELLEP----IRELAERYAAARERLAELEYLRAALRLWFAQRRlelLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 949 GEKERLQSLLRQKEKELDDLRV------------VNTQMCSERASLAQV--VRQEFAEQLAASQEETQRVKAELAELRAR 1014
Cdd:COG4913 309 AELERLEARLDALREELDELEAqirgnggdrleqLEREIERLERELEERerRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 157819725 1015 ---QQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLE 1055
Cdd:COG4913 389 aaaLLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
560-1057 |
3.89e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 560 MRLKLEL-EEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYeATIQRHLSFIDQLIEDKKVLSEKCEAVV 638
Cdd:TIGR00618 245 LTQKREAqEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSR 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 639 AELKQGDQRCRERVAQVQEQHELeikkLKELMSATEKIRREkwiNEKTKKIKEITVRGLEPEiqkliakhkQEVRRLRGL 718
Cdd:TIGR00618 324 AKLLMKRAAHVKQQSSIEEQRRL----LQTLHSQEIHIRDA---HEVATSIREISCQQHTLT---------QHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 719 HEAELQQreEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAA 798
Cdd:TIGR00618 388 KTTLTQK--LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 799 RQRVELEELRQQLEESSAALTRalRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAW-LLTRERELKEE 877
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETR--KKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 878 IRKGRDQEIELVIHRLEADmtlAKEESERAAENRVKRVRDKYETELSELEQSERKLQErctELKGRLGEAEGEKERLQSL 957
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLK---EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD---LTEKLSEAEDMLACEQHAL 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 958 LRQKEKELDDLRVVNT-QMCSERASLAQVVRQEFAEQLAASQEETQ--RVKAELAELRARQQMELDEVHRRVKTALARKE 1034
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHlQQCSQELALKLTALHALQLTLTQERVREHalSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500
....*....|....*....|....*.
gi 157819725 1035 AAVNS---LRKQHEAAEKRADHLEEL 1057
Cdd:TIGR00618 698 MLAQCqtlLRELETHIEEYDREFNEI 723
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
562-1021 |
4.28e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 562 LKLELEEKKQAMVLLQRaLAQQRDLATRrVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLsekcEAVVAEL 641
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFP-LDQYTQLALM-EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVL----EKELKHL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 642 KQGDQRCRERVAQVQEQHEleikklkelmSATEKIRREKWINEKTKKIKEItvRGLEPEIQKLIAKHKQEVRRLR-GLHE 720
Cdd:TIGR00618 232 REALQQTQQSHAYLTQKRE----------AQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPlAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 721 AELQQREEQAAQRHLRqaeelrehlerereaLGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQ 800
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTE---------------LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 801 RVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA-----SCAKKEEAWLLTRERELK 875
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlqgqlAHAKKQQELQQRYAELCA 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 876 EEIRKGRDQEIELVIHRLEADMTL-AKEESERAAEN---RVKRVRDKYETELSELEQSERKLQERCTELKGRL---GEAE 948
Cdd:TIGR00618 445 AAITCTAQCEKLEKIHLQESAQSLkEREQQLQTKEQihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARqdiDNPG 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 949 GEKERLQSLL---RQKEKELDDLRVVNTQMCSERASL---AQVVRQEF---AEQLAASQEETQRVKAELAELRARQQMEL 1019
Cdd:TIGR00618 525 PLTRRMQRGEqtyAQLETSEEDVYHQLTSERKQRASLkeqMQEIQQSFsilTQCDNRSKEDIPNLQNITVRLQDLTEKLS 604
|
..
gi 157819725 1020 DE 1021
Cdd:TIGR00618 605 EA 606
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
561-850 |
4.30e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 561 RLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHL---------SFIDQLIEDKKVLS 631
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALllaglrglaGAVAVLIGVEAAYE 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 632 EKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEI------------------- 692
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGaavdlvasdlreadaryyv 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 693 ---TVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLE 769
Cdd:COG1196 618 lgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 770 QEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLE 849
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
.
gi 157819725 850 A 850
Cdd:COG1196 778 A 778
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
625-955 |
4.97e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 4.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 625 EDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKL 704
Cdd:pfam07888 62 ERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 705 IAK---HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRR 781
Cdd:pfam07888 142 TQRvleRETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 782 LYTevAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKAlkdqLEAERQAWVASCAK 861
Cdd:pfam07888 222 LTT--AHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQA----AQLTLQLADASLAL 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 862 KEEAWLLTRERE-LKEEIRKGRDQEIELVIHRLEADMTLAKEESER-AAENRVKRVRDKYETELSEleqSERKLQerctE 939
Cdd:pfam07888 296 REGRARWAQEREtLQQSAEADKDRIEKLSAELQRLEERLQEERMEReKLEVELGREKDCNRVQLSE---SRRELQ----E 368
|
330
....*....|....*.
gi 157819725 940 LKGRLGEAEGEKERLQ 955
Cdd:pfam07888 369 LKASLRVAQKEKEQLQ 384
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
603-964 |
6.70e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 603 RQQKEQYEATIQRHLSfidQLIEDKKVLSEKcEAVVAELKQGDQRCRERVAQVQEQHE-LEIKKLKELmsatEKIRREkw 681
Cdd:pfam17380 287 RQQQEKFEKMEQERLR---QEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQErMAMEREREL----ERIRQE-- 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 682 inEKTKKIKEITVRGLEPEIQKLiakhkQEVRRLrglhEAELQQREEQAAQRhLRQAEELREHLEREREALGQQERERAQ 761
Cdd:pfam17380 357 --ERKRELERIRQEEIAMEISRM-----RELERL----QMERQQKNERVRQE-LEAARKVKILEEERQRKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 762 QRLEQhleqeQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESsaaltRALRAEFERSREEQERRHQMEL 841
Cdd:pfam17380 425 IRAEQ-----EEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEER-----KRKKLELEKEKRDRKRAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 842 KALKDQLEAERQAWVAscakkeeawlltrerelKEEIRKGRDQEIElvihrlEADMTLAKEESERAAENRVKRvrdkyET 921
Cdd:pfam17380 495 KILEKELEERKQAMIE-----------------EERKRKLLEKEME------ERQKAIYEEERRREAEEERRK-----QQ 546
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 157819725 922 ELSELEQSERKLQeRCTELKGRLGEAEGEKERLQSLLRQKEKE 964
Cdd:pfam17380 547 EMEERRRIQEQMR-KATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1057 |
9.09e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 9.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 581 AQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCeavvAELKQGDQRCRERVAQVQEQHE 660
Cdd:TIGR00618 62 RSLNSLYAAPSEAAFAELEFSLGTKIYRVHRTLRCTRSHRKTEQPEQLYLEQKK----GRGRILAAKKSETEEVIHDLLK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 661 LEIKKLKELMSATEKiRREKWINEKTKKIKEITVRGLEPEIQKLIA-KHKQEVRRLRGlhEAELQQREEQAAQRHLRQAE 739
Cdd:TIGR00618 138 LDYKTFTRVVLLPQG-EFAQFLKAKSKEKKELLMNLFPLDQYTQLAlMEFAKKKSLHG--KAELLTLRSQLLTLCTPCMP 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 740 ELREHLEREREALGQQERErAQQRLEQHLEQEQRALEQQrrrlytevaEEKERLGQQAARQRVELEELRQQLEESSAALT 819
Cdd:TIGR00618 215 DTYHERKQVLEKELKHLRE-ALQQTQQSHAYLTQKREAQ---------EEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 820 RALRAEfersreeqerrhqmelKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRD---QEIELVIHRLEAD 896
Cdd:TIGR00618 285 RINRAR----------------KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAhvkQQSSIEEQRRLLQ 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 897 MTLAKEESERAAENRVKRVRDKYETELsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMC 976
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQH-TLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLA 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 977 seRASLAQVVRQEFAEQL-AASQEETQRVKAELAELRARQQMeldevHRRVKTALARKEAAVNSLRKQHEAAEKRADHLE 1055
Cdd:TIGR00618 428 --HAKKQQELQQRYAELCaAAITCTAQCEKLEKIHLQESAQS-----LKEREQQLQTKEQIHLQETRKKAVVLARLLELQ 500
|
..
gi 157819725 1056 EL 1057
Cdd:TIGR00618 501 EE 502
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
620-1062 |
1.23e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 620 IDQLIEDKKVLSEKCEAVVAELKQgdqrcRERVAQVQEQHElEIKKLKELMSATEKIRR--EKWINEKTKKIKEITVRGL 697
Cdd:COG4913 227 ADALVEHFDDLERAHEALEDAREQ-----IELLEPIRELAE-RYAAARERLAELEYLRAalRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 698 EPEIQKLIAKhKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQ-----QRLEQHLEQEQ 772
Cdd:COG4913 301 RAELARLEAE-LERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleallAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 773 RALEQQRRRLY---TEVAEEKERLGQQAARQRVELEELRQQLEEssaaLTRALRAEFERSREEQERRHQMeLKALKDQL- 848
Cdd:COG4913 380 EEFAALRAEAAallEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPARLLAL-RDALAEALg 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 849 EAERQAWVAsC-----AKKEEAW--------------LLTRERELKEEIRK--GRDQEIELVIHRLEADmtLAKEESERA 907
Cdd:COG4913 455 LDEAELPFV-GelievRPEEERWrgaiervlggfaltLLVPPEHYAAALRWvnRLHLRGRLVYERVRTG--LPDPERPRL 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 908 AENRVKRV--------RDKYETELS------------ELEQSERKL-------------------------------QER 936
Cdd:COG4913 532 DPDSLAGKldfkphpfRAWLEAELGrrfdyvcvdspeELRRHPRAItragqvkgngtrhekddrrrirsryvlgfdnRAK 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 937 CTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcSERASLAQVVRQEFAEQ-LAASQEETQRVKAELAELRARQ 1015
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQ-------ERREALQRLAEYSWDEIdVASAEREIAELEAELERLDASS 684
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 157819725 1016 QmELDEVHRRVKTALARKEAA---VNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:COG4913 685 D-DLAALEEQLEELEAELEELeeeLDELKGEIGRLEKELEQAEEELDELQ 733
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
244-813 |
1.25e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 244 LLRRKEVTEEEAERFIQQVNQAAVTIQRwyrCQVQRRRTGAASLEHLLASKREGQRQRLGSGNLLDLHRQEEAARKKARE 323
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEE---AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 324 EKARQARQAAIQELQQKRAQKAREVEHRPPKERPETRALEQPRPTQEppsmpssvthpkannagaslyptgpadpcppas 403
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL--------------------------------- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 404 ESFPERQPSLEDKPQDAHSQVEAREDLAALASTRSKTRARATLDDLLDTLKLLEEEPEPLLHPKAYRQDRYAWMDEEEDT 483
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 484 NPLTADNLEKFGKLSAApgppDDGTLLSEAKLQSIMTFLDEMEKSGQERPAPWRESLVLEAGPRSLELGSEGTTSVMRLK 563
Cdd:COG1196 462 LELLAELLEEAALLEAA----LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 564 LELEEKKQAmVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEAtiqrhlSFIDQLIEDKKVLSEKCEAVVAELKQ 643
Cdd:COG1196 538 AALEAALAA-ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA------RAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 644 GDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKwinEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAEL 723
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR---EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 724 QQREEQAAQRH-LRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRV 802
Cdd:COG1196 688 LAEEELELEEAlLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
570
....*....|.
gi 157819725 803 ELEELRQQLEE 813
Cdd:COG1196 768 ELERLEREIEA 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
754-964 |
1.47e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 754 QQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLG---QQAARQRVELEELRQQLEESSAALTRALRAEFERSR 830
Cdd:COG4942 33 QQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRaleQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 831 EEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAaen 910
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA--- 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 157819725 911 RVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKE 964
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
579-1014 |
1.53e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 579 ALAQQRDLATRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQ 658
Cdd:PRK02224 311 AVEARREELEDRDEELRDRL-EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 659 HElEIKKLKE-----------LMSATEKIRREKwiNEKTKKIKEI-----TVRGLEPEIQKLIAKHK-----QEVRRlrG 717
Cdd:PRK02224 390 EE-EIEELRErfgdapvdlgnAEDFLEELREER--DELREREAELeatlrTARERVEEAEALLEAGKcpecgQPVEG--S 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 718 LHEAELQQREEQAAQRHLRQAEELREhlererealgQQERERAQQRLEQHLEQEQRA--LEQQRRRLYTEVAEEKERLGQ 795
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEE----------VEEVEERLERAEDLVEAEDRIerLEERREDLEELIAERRETIEE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 796 ---QAARQRVELEELRQQLEESSAALTRA-LRAEFERSREEQERRHQMELKALKDQLE--AERQAWVASCAKKEEawllt 869
Cdd:PRK02224 535 kreRAEELRERAAELEAEAEEKREAAAEAeEEAEEAREEVAELNSKLAELKERIESLEriRTLLAAIADAEDEIE----- 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 870 RERELKEEIRKGRDQEIELVIHRLEADMTLAKE-ESERAAENRVKRVRdkYETELSELEQSERKLQERCTELKGRLGEAE 948
Cdd:PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEfDEARIEEAREDKER--AEEYLEQVEEKLDELREERDDLQAEIGAVE 687
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157819725 949 GEKERLQSlLRQKEKELDDlrvvntqmcseraslaqvvRQEFAEQLAASQEETQRVKAEL-AELRAR 1014
Cdd:PRK02224 688 NELEELEE-LRERREALEN-------------------RVEALEALYDEAEELESMYGDLrAELRQR 734
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
726-1061 |
2.18e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 726 REEQAAQRHLRQAEELREHLEREREAL-GQQERERAQQRLEQHLEQEQRALEQ--QRRRLYTEVAEEKERLGQQAARQRV 802
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLaAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLVQTALRQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 803 ELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA------------SCAKKEEAWL--- 867
Cdd:PRK04863 356 DLEELEERLEEQNEV--VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVqqtraiqyqqavQALERAKQLCglp 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 868 -LTRErELKEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAEnRVKRVRDKYE--------TELSELEQSERKL 933
Cdd:PRK04863 434 dLTAD-NAEDWLEEFQAKEQEATEELLSLEQKLsvaqaAHSQFEQAYQ-LVRKIAGEVSrseawdvaRELLRRLREQRHL 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 934 QERCTELKGRLGEAEGEKERLQSLLRQkekeLDDLRVVNTQMCSERASLaqvvrQEFAEQLAASQEETQRVKAELAELRA 1013
Cdd:PRK04863 512 AEQLQQLRMRLSELEQRLRQQQRAERL----LAEFCKRLGKNLDDEDEL-----EQLQEELEARLESLSESVSEARERRM 582
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 157819725 1014 RQQMELDEVHRRVKTALARK------EAAVNSLRKQHEAAEKRADHLEELLEQH 1061
Cdd:PRK04863 583 ALRQQLEQLQARIQRLAARApawlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
751-1062 |
2.87e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 751 ALGQQERERAQQRLEQ----HL--------EQEQRALEQQRRrlytEVAEEKERLGQQAARQRVELEELRQQLEessaal 818
Cdd:COG3096 805 SFDVQKLQRLHQAFSQfvggHLavafapdpEAELAALRQRRS----ELERELAQHRAQEQQLRQQLDQLKEQLQ------ 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 819 trALRAEFERSREEQERRHQMELKALKDQLEA--ERQAWVASCAKKeeawlLTRERELKEEIRKGRDQEIELVIHRLEAD 896
Cdd:COG3096 875 --LLNKLLPQANLLADETLADRLEELREELDAaqEAQAFIQQHGKA-----LAQLEPLVAVLQSDPEQFEQLQADYLQAK 947
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 897 MTL--AKEESERAAENRVKRVRDKYETELSELEQSeRKLQERcteLKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQ 974
Cdd:COG3096 948 EQQrrLKQQIFALSEVVQRRPHFSYEDAVGLLGEN-SDLNEK---LRARLEQAEEARREAREQLRQAQAQYSQYNQVLAS 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 975 MCSERASLAQVVR---QEFAE---QLAASQEET-----QRVKAELAELRARQqmeldevhRRVKTALARKEAAVNSLRKQ 1043
Cdd:COG3096 1024 LKSSRDAKQQTLQeleQELEElgvQADAEAEERarirrDELHEELSQNRSRR--------SQLEKQLTRCEAEMDSLQKR 1095
|
330
....*....|....*....
gi 157819725 1044 HEAAEKRADHLEELLEQHK 1062
Cdd:COG3096 1096 LRKAERDYKQEREQVVQAK 1114
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
577-936 |
4.96e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 577 QRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQ------RHLSFIDQLIEDKKVLSEKCEA---VVAELKQGDQR 647
Cdd:PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvqtalRQQEKIERYQADLEELEERLEEqneVVEEADEQQEE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 648 CRERVaqvqEQHELEIKKLKELMS------------------ATEKIRREKWINEktkkIKEITVRGLEPEIQKLIAKHK 709
Cdd:PRK04863 381 NEARA----EAAEEEVDELKSQLAdyqqaldvqqtraiqyqqAVQALERAKQLCG----LPDLTADNAEDWLEEFQAKEQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 710 QEVRRLRglhEAELQQREEQAAQRHLRQAEELREHlerereALGQQERERAQQRLEQHLEQ--EQRALEQQRRRLYTEVA 787
Cdd:PRK04863 453 EATEELL---SLEQKLSVAQAAHSQFEQAYQLVRK------IAGEVSRSEAWDVARELLRRlrEQRHLAEQLQQLRMRLS 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 788 EEKERLGQQAARQRV----------------ELEELRQQLEESSAALTRALRaeFERSREEQERRHQMELKALKDQLEAE 851
Cdd:PRK04863 524 ELEQRLRQQQRAERLlaefckrlgknlddedELEQLQEELEARLESLSESVS--EARERRMALRQQLEQLQARIQRLAAR 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 852 RQAWVASCAKkeeawlLTRERELKEEIRKGRDQEIELVIHRLEadmtlakeeSERAAEnrvkRVRDKYETELSELEQSER 931
Cdd:PRK04863 602 APAWLAAQDA------LARLREQSGEEFEDSQDVTEYMQQLLE---------RERELT----VERDELAARKQALDEEIE 662
|
....*
gi 157819725 932 KLQER 936
Cdd:PRK04863 663 RLSQP 667
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
961-1058 |
6.39e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.92 E-value: 6.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 961 KEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVH--RRVKTALARKEAAVN 1038
Cdd:COG0542 409 KPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEeiQELKEELEQRYGKIP 488
|
90 100
....*....|....*....|
gi 157819725 1039 SLRKQHEAAEKRADHLEELL 1058
Cdd:COG0542 489 ELEKELAELEEELAELAPLL 508
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
754-962 |
6.61e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 754 QQERERAQQRLEQHLEQEQRALEQQRRRL--------YTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAE 825
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALeefrqkngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 826 FERSREEQERRHQMELKALKDQLeaerqawvascakkeeawlLTRERELKEEIRKGRDQEIELVihRLEADMtlakEESE 905
Cdd:COG3206 250 GSGPDALPELLQSPVIQQLRAQL-------------------AELEAELAELSARYTPNHPDVI--ALRAQI----AALR 304
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 157819725 906 RAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKE 962
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
883-1060 |
8.42e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 883 DQEIELVIHRLEA-DMTLAKEESERAAEN----RVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKErLQSL 957
Cdd:COG1579 16 DSELDRLEHRLKElPAELAELEDELAALEarleAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE-YEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 958 lrqkEKELDDLRvvntqmcsERASLAQVVRQEFAEQLAASQEETQRVKAELAELRArqqmELDEVHRRVKTALARKEAAV 1037
Cdd:COG1579 95 ----QKEIESLK--------RRISDLEDEILELMERIEELEEELAELEAELAELEA----ELEEKKAELDEELAELEAEL 158
|
170 180
....*....|....*....|...
gi 157819725 1038 NSLRKQHEAAEKRADhlEELLEQ 1060
Cdd:COG1579 159 EELEAEREELAAKIP--PELLAL 179
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
713-1063 |
9.43e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 713 RRLRGLHEAELQQREEQAAQRHlrqaeelrehlerEREALGQQERERAQQRLEQ----HL--------EQEQRALEQQRR 780
Cdd:PRK04863 781 RAAREKRIEQLRAEREELAERY-------------ATLSFDVQKLQRLHQAFSRfigsHLavafeadpEAELRQLNRRRV 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 781 RLYTEVAeekeRLGQQAARQRVELEELRQQLEessaaltrALRAEFERSREEQERRHQMELKALKDQLEAERQAwvASCA 860
Cdd:PRK04863 848 ELERALA----DHESQEQQQRSQLEQAKEGLS--------ALNRLLPRLNLLADETLADRVEEIREQLDEAEEA--KRFV 913
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 861 KKEEAWLltreRELKEEIRKGRDQEIElvIHRLEADMTLAKEESERA-------AENRVKRVRDKYETELSELEQsERKL 933
Cdd:PRK04863 914 QQHGNAL----AQLEPIVSVLQSDPEQ--FEQLKQDYQQAQQTQRDAkqqafalTEVVQRRAHFSYEDAAEMLAK-NSDL 986
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 934 QERcteLKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVrQEFAEQLaasQEETQRVKAElAELRA 1013
Cdd:PRK04863 987 NEK---LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQML-QELKQEL---QDLGVPADSG-AEERA 1058
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 1014 RQQMelDEVHRRVKTALARK---EAAVNSLRKQHEAAEKRADHLE-------ELLEQHKG 1063
Cdd:PRK04863 1059 RARR--DELHARLSANRSRRnqlEKQLTFCEAEMDNLTKKLRKLErdyhemrEQVVNAKA 1116
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
921-1033 |
9.47e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 9.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 921 TELSELEQSERK-LQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFA------EQ 993
Cdd:PRK09039 66 ADLLSLERQGNQdLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAqvellnQQ 145
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 157819725 994 LAASQEETQRVKAELAELRAR---QQMELDEVHRRVKTALARK 1033
Cdd:PRK09039 146 IAALRRQLAALEAALDASEKRdreSQAKIADLGRRLNVALAQR 188
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
887-948 |
1.04e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 43.17 E-value: 1.04e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157819725 887 ELVIHRLEADMTLA-KEESERAAENRVKRVRDKyeTELSELEqseRKLQERCTELKGRLGEAE 948
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG--EELDDLQ---KRLQTECEDLRSRVSEAE 85
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
756-1017 |
1.22e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 756 ERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAefersREEQER 835
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDA-----DIETAA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 836 RHQMELKALKDQLEAErqawvascaKKEEAWLLTRERELKEE---IRKGRDQEIELVIHRLEADMTLAKEESER---AAE 909
Cdd:pfam12128 344 ADQEQLPSWQSELENL---------EERLKALTGKHQDVTAKynrRRSKIKEQNNRDIAGIKDKLAKIREARDRqlaVAE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 910 NRVKRV----RDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSlLRQKEKELDDLRVVNTQMCSERASLAQ- 984
Cdd:pfam12128 415 DDLQALeselREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ-LENFDERIERAREEQEAANAEVERLQSe 493
|
250 260 270
....*....|....*....|....*....|....*
gi 157819725 985 --VVRQEFAEQLAASQEETQRVKAELAELRARQQM 1017
Cdd:pfam12128 494 lrQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
735-1059 |
1.23e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 735 LRQAEELREHLEREREALGQQERERAQQRLEQH----LEQEQRALEQQRRRLYTEV--AEEKERLGQQAARQ-------R 801
Cdd:COG3096 274 MRHANERRELSERALELRRELFGARRQLAEEQYrlveMARELEELSARESDLEQDYqaASDHLNLVQTALRQqekieryQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 802 VELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLE--------------AERQAWVAscakKEEAWL 867
Cdd:COG3096 354 EDLEELTERLEEQEEV--VEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiQYQQAVQA----LEKARA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 868 LTREREL-----KEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAEnRVKRVRDkyETELSELEQSERKLQERC 937
Cdd:COG3096 428 LCGLPDLtpenaEDYLAAFRAKEQQATEEVLELEQKLsvadaARRQFEKAYE-LVCKIAG--EVERSQAWQTARELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 938 TELKGRLGEAEGEKERLQSlLRQKEKELDDLRVVNTQMC----SERASLAQVvrQEFAEQLAASQEETQRVKAELAELRA 1013
Cdd:COG3096 505 RSQQALAQRLQQLRAQLAE-LEQRLRQQQNAERLLEEFCqrigQQLDAAEEL--EELLAELEAQLEELEEQAAEAVEQRS 581
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 157819725 1014 RQQMELDEVHRRVKtALARKEAAvnsLRKQHEAAEKRADHLEELLE 1059
Cdd:COG3096 582 ELRQQLEQLRARIK-ELAARAPA---WLAAQDALERLREQSGEALA 623
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
682-820 |
1.28e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 682 INEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREE--QAAQRHLRQAEELREHLERERealgqQERER 759
Cdd:PRK12704 36 AEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNelQKLEKRLLQKEENLDRKLELL-----EKREE 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157819725 760 AQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQA------ARQRVeLEELRQQLEESSAALTR 820
Cdd:PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISgltaeeAKEIL-LEKVEEEARHEAAVLIK 176
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
586-1057 |
1.35e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 586 LATRRVKETEKELSRQLRQQKEQYE-----ATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHE 660
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKAQIEEKEekdlhERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 661 LE--IKKLKELMSATEKIRREkwINEKTKKIKEiTVRGLEPEIQKLIAkhkqEVRRLRGLHEAELQQREEQAAQR-HLRQ 737
Cdd:PRK02224 256 LEaeIEDLRETIAETEREREE--LAEEVRDLRE-RLEELEEERDDLLA----EAGLDDADAEAVEARREELEDRDeELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 738 AEELREHLEREREALGQQERERAQQrleqhLEQEQRALEQQRRRLYTEVAEEKErlgqQAARQRVELEELRQQLEESSAA 817
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADD-----LEERAEELREEAAELESELEEARE----AVEDRREEIEELEEEIEELRER 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 818 LTRALRAEFersreeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRD-----------QEI 886
Cdd:PRK02224 400 FGDAPVDLG-------------NAEDFLEELREERDE-----LREREAELEATLRTARERVEEAEAlleagkcpecgQPV 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 887 ElvihrleadmtlAKEESERAAENRVKRvrDKYETELSELEQSERKLQERCTELKgRLGEAEGEKERLQSllrqkekeld 966
Cdd:PRK02224 462 E------------GSPHVETIEEDRERV--EELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEE---------- 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 967 dlrvvntqmcseraslaqvvRQEFAEQLAASQEETQRVKAE-LAELRARQQmELDEvhrrvkTALARKEAAvnslRKQHE 1045
Cdd:PRK02224 517 --------------------RREDLEELIAERRETIEEKRErAEELRERAA-ELEA------EAEEKREAA----AEAEE 565
|
490
....*....|..
gi 157819725 1046 AAEKRADHLEEL 1057
Cdd:PRK02224 566 EAEEAREEVAEL 577
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
572-824 |
1.46e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 572 AMVLLQRALAQQRDLatrrvKETEKELSrQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRcrer 651
Cdd:COG4942 8 ALLLALAAAAQADAA-----AEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 652 vaqvQEQHELEIKKLKELMSATEKiRREKWINEKTKKIKEITVRGLEPEIQKLI-AKHKQEVRRLRGLHEAELQQREEQA 730
Cdd:COG4942 78 ----LAALEAELAELEKEIAELRA-ELEAQKEELAELLRALYRLGRQPPLALLLsPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 731 AQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLgQQAARQRVELEELRQQ 810
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL-AELQQEAEELEALIAR 231
|
250
....*....|....
gi 157819725 811 LEESSAALTRALRA 824
Cdd:COG4942 232 LEAEAAAAAERTPA 245
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
709-822 |
1.48e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.63 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 709 KQEVRRLRglHEAELQQREEQAAQRHLRQAEELREHLERErealgQQERERAQQRLEQHLEQEQRALEQQRRrlytEVAE 788
Cdd:PRK11448 148 QQEVLTLK--QQLELQAREKAQSQALAEAQQQELVALEGL-----AAELEEKQQELEAQLEQLQEKAAETSQ----ERKQ 216
|
90 100 110
....*....|....*....|....*....|....
gi 157819725 789 EKERLGQQAArQRVELEElrqqleessaALTRAL 822
Cdd:PRK11448 217 KRKEITDQAA-KRLELSE----------EETRIL 239
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
602-817 |
1.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 602 LRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQgdqrcRERVAQVQEQHELEIKKLKELMSATEKIRREkw 681
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKLLLQQLSELESQLAEARAE-- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 682 INEKTKKIKEI------------------TVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRE 743
Cdd:COG3206 235 LAEAEARLAALraqlgsgpdalpellqspVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157819725 744 HLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLytevaeekERLGQQAARQRVELEELRQQLEESSAA 817
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL--------RRLEREVEVARELYESLLQRLEEARLA 380
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
870-1064 |
2.07e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 870 RERE-LKEEIRKGRDQEIELvihRLEADMTLAKEESERAAENRVkrvrdkyETELSELEQSERKLQERCTELKGRLGEAE 948
Cdd:PRK02224 272 REREeLAEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEELRDRLEECRVAAQAHN 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 949 GEKERLQSLLRQKEKELDDLRvvntqmcsERASLAQVVRQEFAEQLAASQEETQRVKAELAELRAR---QQMELDEVHRR 1025
Cdd:PRK02224 342 EEAESLREDADDLEERAEELR--------EEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdAPVDLGNAEDF 413
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 157819725 1026 VKTALARKEAA---VNSLRKQHEAAEKRADHLEELLEQHKGP 1064
Cdd:PRK02224 414 LEELREERDELrerEAELEATLRTARERVEEAEALLEAGKCP 455
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
565-969 |
2.12e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 565 ELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEaTIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQG 644
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE-EIEEEISKITARIGELKKEIKELKKAIEELKKA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 645 DQRCRERVAQVQEQHELEIkkLKELMSATEKIRRE-KWINEKTKKIKEITVrglepEIQKLIAKHKqEVRRLRGLHEaEL 723
Cdd:PRK03918 435 KGKCPVCGRELTEEHRKEL--LEEYTAELKRIEKElKEIEEKERKLRKELR-----ELEKVLKKES-ELIKLKELAE-QL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 724 QQREEQAAQRHLRQAEELREHLEREREAL----GQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAAR 799
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLiklkGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 800 QRVELEELRQQLEEssaaltralraefersreeqERRHQMELKALKDQLEAErqawvascakKEEAWLLTRERELKEEIR 879
Cdd:PRK03918 586 SVEELEERLKELEP--------------------FYNEYLELKDAEKELERE----------EKELKKLEEELDKAFEEL 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 880 KGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQE---RCTELKGRLGEAEGEKERLQS 956
Cdd:PRK03918 636 AETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEikkTLEKLKEELEEREKAKKELEK 715
|
410
....*....|...
gi 157819725 957 LLRQKEKeLDDLR 969
Cdd:PRK03918 716 LEKALER-VEELR 727
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
909-1046 |
2.61e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 909 ENRVKRVRDKYETELSE-------LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcsERAs 981
Cdd:PRK00409 501 ENIIEEAKKLIGEDKEKlneliasLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL--------EEA- 571
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 982 laqvvRQEFAEQLAASQEETQRVKAELAELRARQQM-----ELDEVHRRVKTALARKEAAVNSLRKQHEA 1046
Cdd:PRK00409 572 -----EKEAQQAIKEAKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
576-973 |
3.07e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 576 LQRALaQQRDLATRRVKETEKELSRQLRQQKEQYEATIQ-------RHLSFIDQLIEDKKVLSEKCEAVVAE---LKQGD 645
Cdd:pfam15921 417 LRREL-DDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgknesleKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 646 QRCRERVAQVQEQH-----------------ELEIKKLKELMSATEKIRREKWINEKTK-------KIKEITVRGLEPEI 701
Cdd:pfam15921 496 RTVSDLTASLQEKEraieatnaeitklrsrvDLKLQELQHLKNEGDHLRNVQTECEALKlqmaekdKVIEILRQQIENMT 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 702 QkLIAKHKqevrRLRGLHEAELQQREEQAAQRHLRQAEELREHLErerealgQQERERAQQRLEQHLEQEQRAL---EQQ 778
Cdd:pfam15921 576 Q-LVGQHG----RTAGAMQVEKAQLEKEINDRRLELQEFKILKDK-------KDAKIRELEARVSDLELEKVKLvnaGSE 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 779 RRRLYTEVAEEKERLGQQAARQRVELEELRQQLEessaALTRALRAEFERSREEQERRhQMELKALKDQLEAERQAWVAS 858
Cdd:pfam15921 644 RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE----VLKRNFRNKSEEMETTTNKL-KMQLKSAQSELEQTRNTLKSM 718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 859 CAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENR---------VKRVRDKYETELSELEQS 929
Cdd:pfam15921 719 EGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKnklsqelstVATEKNKMAGELEVLRSQ 798
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 157819725 930 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNT 973
Cdd:pfam15921 799 ERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHT 842
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
652-908 |
3.09e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 652 VAQVQEQHELEikklKELMSATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGlHEAELQQREEQAA 731
Cdd:COG4942 16 AAQADAAAEAE----AELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQ-ELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 732 QRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQL 811
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 812 EESSAALTRALRaefersreeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIEL--V 889
Cdd:COG4942 170 EAERAELEALLA----------------ELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQEAEELeaL 228
|
250
....*....|....*....
gi 157819725 890 IHRLEADMTLAKEESERAA 908
Cdd:COG4942 229 IARLEAEAAAAAERTPAAG 247
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
568-782 |
3.61e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 568 EKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEAtiqrhlsFIDQLIEDKKVLSEKCEAVVAELKQGDQR 647
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEE-------QKEQKREARTEKQAYWQVVEGALDAQLAL 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 648 CRERVAQVQEQHELEIKKLKELMSAtekirrekwiNEKTKKIKEITVRGLEPEIQKL------IAKHKQEVRRLRGLhea 721
Cdd:pfam12128 734 LKAAIAARRSGAKAELKALETWYKR----------DLASLGVDPDVIAKLKREIRTLerkierIAVRRQEVLRYFDW--- 800
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157819725 722 eLQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRleQHLEQEQRALEQQRRRL 782
Cdd:pfam12128 801 -YQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRR--AKLEMERKASEKQQVRL 858
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
562-824 |
5.39e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 562 LKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSR------QLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCE 635
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLlneeaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 636 AVVAELKQGDQRCRErvaqvqeqHELEIKKLKELMSATEKIRREKwinEKTKKIKEITVRGLEPEIQKLiakhKQEVRRL 715
Cdd:TIGR02168 856 SLAAEIEELEELIEE--------LESELEALLNERASLEEALALL---RSELEELSEELRELESKRSEL----RRELEEL 920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 716 RGlHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQrlEQHLEQEQRALEQQRRRL-------YTEVAE 788
Cdd:TIGR02168 921 RE-KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD--EEEARRRLKRLENKIKELgpvnlaaIEEYEE 997
|
250 260 270
....*....|....*....|....*....|....*.
gi 157819725 789 EKERLgQQAARQRVELEELRQQLEESSAALTRALRA 824
Cdd:TIGR02168 998 LKERY-DFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
867-1062 |
6.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 867 LLTRERELKEEIRKGRDQEIELVIHRL-EADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKG--R 943
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELkELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKllQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 944 LGEAEGEKERLQSLLRQKEKELDDLRvvntqmcserasLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQM------ 1017
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELE------------ERLEELRELEEELEELEAELAELQEELEELLEQLSLateeel 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 157819725 1018 -ELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1062
Cdd:COG4717 195 qDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
876-1027 |
6.77e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 876 EEIRKG--RDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKER 953
Cdd:COG2433 366 DEVKARviRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIER 445
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157819725 954 LQ---SLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEfaeqlaasQEETQRVKAELAELRARQQMELDEVHRRVK 1027
Cdd:COG2433 446 LErelSEARSEERREIRKDREISRLDREIERLERELEEE--------RERIEELKRKLERLKELWKLEHSGELVPVK 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
565-1061 |
8.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 565 ELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAV------- 637
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALglplpas 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 638 VAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKwiNEKTKKIKEITVRglepeiQKLIAKHKQEVR-RLR 716
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL--RELEAEIASLERR------KSNIPARLLALRdALA 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 717 ---GLHEAEL-------QQREEQAA-------------------QRHLRQAEE----------------LREHLEREREA 751
Cdd:COG4913 451 ealGLDEAELpfvgeliEVRPEEERwrgaiervlggfaltllvpPEHYAAALRwvnrlhlrgrlvyervRTGLPDPERPR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 752 LGQQE------------RERAQQRL-----------EQHLEQEQRAL--EQQRRRLYTevAEEKER---------LGQQA 797
Cdd:COG4913 531 LDPDSlagkldfkphpfRAWLEAELgrrfdyvcvdsPEELRRHPRAItrAGQVKGNGT--RHEKDDrrrirsryvLGFDN 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 798 ARQRVELEELRQQLEESSAALTRALRaefersreeqerrhqmELKALKDQLEAERQAWVAScakKEEAWLLTRERELKEE 877
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLE----------------ALEAELDALQERREALQRL---AEYSWDEIDVASAERE 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 878 IRKGRDQeielvIHRLEADMtlakeeseraaeNRVKRVRDkyetELSELEQSERKLQERCTELKGRLGEAEGEKERLQSL 957
Cdd:COG4913 670 IAELEAE-----LERLDASS------------DDLAALEE----QLEELEAELEELEEELDELKGEIGRLEKELEQAEEE 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 958 LRQKEKELDDLrvVNTQMCSERASLAQVVRQEFAEQLAasQEETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAV 1037
Cdd:COG4913 729 LDELQDRLEAA--EDLARLELRALLEERFAAALGDAVE--RELRENLEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
570 580
....*....|....*....|....
gi 157819725 1038 NSLRKQHEAAEKRADHLEELLEQH 1061
Cdd:COG4913 805 ADLDADLESLPEYLALLDRLEEDG 828
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
849-1014 |
8.94e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 849 EAERQAWvascAKKEEAwlltrERELKEEIRKGRDQeielvihrLEADMTLAKEESERAaENRVKRVRDKYETELSELEQ 928
Cdd:PRK12704 46 EAKKEAE----AIKKEA-----LLEAKEEIHKLRNE--------FEKELRERRNELQKL-EKRLLQKEENLDRKLELLEK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819725 929 SERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLrvvnTQMCSE--RASLAQVVRQEFAEQLAAS-QEETQRVK 1005
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI----SGLTAEeaKEILLEKVEEEARHEAAVLiKEIEEEAK 183
|
....*....
gi 157819725 1006 AElAELRAR 1014
Cdd:PRK12704 184 EE-ADKKAK 191
|
|
| |
