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Conserved domains on  [gi|157820631|ref|NP_001102859|]
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uncharacterized protein C3orf84 homolog [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HDNR super family cl20984
Domain of unknown function with conserved HDNR motif; This family of proteins is found in ...
 7-115 1.44e-06

Domain of unknown function with conserved HDNR motif; This family of proteins is found in eukaryotes. Proteins in this family are typically between 117 and 219 amino acids in length. There is a conserved HDNR sequence motif. The function is not known.


The actual alignment was detected with superfamily member pfam15115:

Pssm-ID: 464512  Cd Length: 177  Bit Score: 46.72  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820631    7 GSWHNS-GF-YGHYRGQVKSESAGEYRLAAKPPP----PAVFLQRCEEPAKQHY-FSKHDNRTSYDKGPYCLLQGIGRRK 79
Cdd:pfam15115  15 GRWFPHiGFtQRHPESSTGAMLKEPFSPRLSPQVegklPPIYKNREKQAVNNNFpFSVHDNRHSLQNSGEYFDSGLGRKK 94

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 157820631   80 --DLERLWKRHTFLRWApCElELSQQPPLESSYQTDFR 115
Cdd:pfam15115  95 isPEKRQHSSRNFNLWA-CD-YVPSCLDGFSSYQTSYV 130
 
Name Accession Description Interval E-value
HDNR pfam15115
Domain of unknown function with conserved HDNR motif; This family of proteins is found in ...
 7-115 1.44e-06

Domain of unknown function with conserved HDNR motif; This family of proteins is found in eukaryotes. Proteins in this family are typically between 117 and 219 amino acids in length. There is a conserved HDNR sequence motif. The function is not known.


Pssm-ID: 464512  Cd Length: 177  Bit Score: 46.72  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820631    7 GSWHNS-GF-YGHYRGQVKSESAGEYRLAAKPPP----PAVFLQRCEEPAKQHY-FSKHDNRTSYDKGPYCLLQGIGRRK 79
Cdd:pfam15115  15 GRWFPHiGFtQRHPESSTGAMLKEPFSPRLSPQVegklPPIYKNREKQAVNNNFpFSVHDNRHSLQNSGEYFDSGLGRKK 94

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 157820631   80 --DLERLWKRHTFLRWApCElELSQQPPLESSYQTDFR 115
Cdd:pfam15115  95 isPEKRQHSSRNFNLWA-CD-YVPSCLDGFSSYQTSYV 130
 
Name Accession Description Interval E-value
HDNR pfam15115
Domain of unknown function with conserved HDNR motif; This family of proteins is found in ...
 7-115 1.44e-06

Domain of unknown function with conserved HDNR motif; This family of proteins is found in eukaryotes. Proteins in this family are typically between 117 and 219 amino acids in length. There is a conserved HDNR sequence motif. The function is not known.


Pssm-ID: 464512  Cd Length: 177  Bit Score: 46.72  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820631    7 GSWHNS-GF-YGHYRGQVKSESAGEYRLAAKPPP----PAVFLQRCEEPAKQHY-FSKHDNRTSYDKGPYCLLQGIGRRK 79
Cdd:pfam15115  15 GRWFPHiGFtQRHPESSTGAMLKEPFSPRLSPQVegklPPIYKNREKQAVNNNFpFSVHDNRHSLQNSGEYFDSGLGRKK 94

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 157820631   80 --DLERLWKRHTFLRWApCElELSQQPPLESSYQTDFR 115
Cdd:pfam15115  95 isPEKRQHSSRNFNLWA-CD-YVPSCLDGFSSYQTSYV 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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